ncbi_isolation_source: sea-water

ncbi_organism_name: Salinibacterium amurskyense

ncbi_submitter: Chinese center for disease control and prevention


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_genome_representation: full

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Poland: Plonsk

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: Chinese PLA General Hospital


gtdb_representative: t

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paenarthrobacter sp. NPDC090520

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Hyalomma asiaticum


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Klebsiella sp. 2-N_Kleb.

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Salmonella sp. NW94

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Liaoning Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin057

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin057


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, IPN


ncbi_organism_name: Tardiphaga sp. 862_B3_N4_1

ncbi_submitter: VIB


ncbi_organism_name: Mycoplasma todarodis

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_level: Complete Genome

ncbi_country: China: Henan

ncbi_isolation_source: pig

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Duganella sp. S19_KUP01_CR8

ncbi_submitter: United States Naval Academy


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_country: China: Zhuhai

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 16E257

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: New Zealand

ncbi_isolation_source: Environment - Horticulture

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_country: Spain: Bilbao

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_submitter: NISC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH17


ncbi_submitter: University of Florida


ncbi_country: Italy: Nulvi

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_assembly_name: Actinomyces ihumii

ncbi_organism_name: Actinomyces ihuae

ncbi_refseq_category: reference genome

ncbi_submitter: URMITE


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Thailand: Chatuchak

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Washington University School of Medicine


gtdb_type_species_of_genus: t

ncbi_country: USA: Long Island Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Oceanospirillum linum

ncbi_submitter: University of New Hampshire - Manchester


ncbi_country: Israel

ncbi_isolation_source: environment

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Thailand: Chiang Mai province

ncbi_isolation_source: Human feces

ncbi_submitter: Faculty of Veterinary science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces camponoticapitis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1300

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Thailand

ncbi_isolation_source: Fermented shrimp

ncbi_organism_name: Staphylococcus piscifermentans


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp A-14

ncbi_strain_identifiers: Hp A-14

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: Honolulu; HI

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Ruegeria sp. ANG-R

ncbi_strain_identifiers: ANG-R

ncbi_submitter: University of Connecticut


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Vaginal fluid

ncbi_organism_name: Fenollaria massiliensis

ncbi_submitter: University of Maryland Baltimore


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Candidatus Malacoplasma girerdii


ncbi_organism_name: uncultured Intestinibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Chromosome

ncbi_country: Malaysia: Selangor

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii PR07

ncbi_submitter: Universiti Teknologi MARA


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: Screening

ncbi_organism_name: Escherichia coli

ncbi_submitter: Charles University


ncbi_assembly_name: IMG-taxon 2593339158 annotated assembly

ncbi_organism_name: Lachnobacterium bovis DSM 14045

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: St. Francis University College of Health and Allied Sciences


ncbi_isolation_source: host stool sample

ncbi_organism_name: Brevibacterium senegalense

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 3

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Denmark: Lyngby; Small hill with plants just outside CFB (DTU campus). Plants were all very dark green. Soil clearly had lots of nutrients

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00103

ncbi_submitter: Technical University of Denmark


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Hellea sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-3

ncbi_isolation_source: activated sludge

ncbi_organism_name: Cyanobacteria bacterium SZAS LIN-3

ncbi_strain_identifiers: SZAS LIN-3

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SZAS LIN-3


ncbi_organism_name: Microbacterium hatanonis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Enterococcus sp. AZ163

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio genomosp. F10 str. 9ZD137

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio genomosp. F10;x__Vibrio genomosp. F10 str. 9ZD137


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Spirosoma soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Utah


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Salmonella sp. SKLX115133

ncbi_submitter: Zhejiang university


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Almyronema sp.

ncbi_submitter: Jadavpur University


ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Alkalidesulfovibrio alkalitolerans

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: USDA ARS


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Nocardioides kribbensis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Korea

ncbi_organism_name: Streptomyces seoulensis

ncbi_submitter: University of Illinois


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Bosnia and Herzegovina: Hercegovacko-neretvanski Canton

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Korea: Daejeon

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chonnam National University


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stanford University


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: AAFC


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Flagellimonas crocea

ncbi_submitter: zhejiang university


ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_assembly_name: Rumen uncultured genome RUG12748

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 22

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Norway

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Bacillus mojavensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_isolation_source: pure culture

ncbi_organism_name: Salirhabdus euzebyi

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Pelosinus sp.

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: mBioClim


ncbi_country: Thailand: Chachoengsao

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile P64

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: isolated from larva of Dermacentor taiwanensis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Uganda: Ponds

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Aurantimicrobium sp. MWH-Uga1

ncbi_submitter: University of Delaware


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Escherichia coli

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Russia: Moscow

ncbi_isolation_source: digestive system

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SRCAMB


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: University of Michigan Medical School


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_01_FULL_40_39


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: United Arab Emirates

ncbi_organism_name: Fluoribacter gormanii

ncbi_submitter: Danish Technical University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: Endotracheal aspirates

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_country: France: Hopital Saint-Louis

ncbi_organism_name: Enterococcus faecium EnGen0167

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 302

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 4938

ncbi_submitter: University of Calgary


ncbi_assembly_name: Mesorhizobium sp. Strain LMG17149_Assembly

ncbi_country: Russia

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. LMG17149

ncbi_submitter: University of Pretoria


ncbi_country: China: Sichuan

ncbi_isolation_source: soil

ncbi_organism_name: Catellatospora sichuanensis

ncbi_submitter: Sichuan Industrial Institute of Anotibioctics


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: India: Pirana landfill site; Ahmedabad; Gujarat

ncbi_isolation_source: Dumpsite

ncbi_submitter: GBRC


ncbi_country: Portugal

ncbi_isolation_source: vaginal swab

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Balneatrix alpica

ncbi_submitter: Haikou People's Hospital


ncbi_organism_name: Cyanothece sp. BG0011

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S10

ncbi_organism_name: Prevotellaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Melissococcus sp. OM08-11BH

ncbi_submitter: BGI


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: Chinese sauerkraut

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Dalian University of Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0126

ncbi_submitter: Broad Institute


ncbi_organism_name: bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NBC_00727

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Candidatus Binatus sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Phacoides pectinatus


ncbi_isolation_source: human gut

ncbi_organism_name: Colibacter massiliensis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Cryomorphaceae bacterium


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-517

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R38(2017)


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-778

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W73649

ncbi_submitter: Broad Institute


ncbi_isolation_source: water

ncbi_organism_name: Rhodobiaceae bacterium UBA5952

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Eikenella halliae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: cecum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing agricultural university


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: soil: meadow; grazing permitted

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Prolixibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Kenya: Kisumu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: USAMRD-A


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Micromonospora sp. NPDC049497

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: South Korea: Gyongnam

ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter achroorhodeus

ncbi_submitter: dongguk university


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Ezakiella sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;x__environmental samples;s__uncultured Ezakiella sp.


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: China: Chongqing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Absicoccus sp.


ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: Shantou University


ncbi_organism_name: Bullifex sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paenibacillus sp. FSL H8-0168

ncbi_submitter: Penn State


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_submitter: Zhejiang university


ncbi_organism_name: Sphingomonas phyllosphaerae

ncbi_submitter: UNESP-FCAV


ncbi_country: Germany: Cologne

ncbi_organism_name: Nocardioides sp. Soil796

ncbi_submitter: ETH Zurich


ncbi_country: USA: New Hampshire; Goffstown

ncbi_isolation_source: canine ocular discharge

ncbi_organism_name: Micrococcus luteus


ncbi_organism_name: Acinetobacter sp.


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: Chulabhorn Graduate Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Alicyclobacillus tengchongensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: TX

ncbi_isolation_source: cavitary lung lesion

ncbi_organism_name: Rhodococcus sp. R1101

ncbi_submitter: Walter Reed Army Institute of Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. R1101


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Port of Yangkou; Rudong County; Nantong City; Jiangsu Province

ncbi_isolation_source: surface water

ncbi_organism_name: Albidovulum marisflavi

ncbi_submitter: Hohai University


ncbi_organism_name: Helicobacter apodemus


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium EnGen0001

ncbi_submitter: Broad Institute


ncbi_country: USA: Toombs County; GA

ncbi_isolation_source: Toombs County

ncbi_organism_name: Pantoea ananatis

ncbi_strain_identifiers: PNA 97-1R

ncbi_submitter: University of Georgia


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Chlamydia abortus

ncbi_submitter: WTSI


ncbi_organism_name: Oceanobacillus neutriphilus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_02_FULL_40_67


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_country: Netherlands

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM-BIA 861

ncbi_submitter: Brigham Young University


ncbi_organism_name: Saccharopolyspora indica

ncbi_submitter: Acharya Nagarjuna University


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Cronobacter sakazakii SP291

ncbi_submitter: University College Dublin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Hydrogenophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA6999

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 100 (4-2850729)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 100 (4-2850729)


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Utah


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Winkia neuii

ncbi_submitter: Loyola University Chicago


ncbi_strain_identifiers: GBK 121 RV

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Laredo


ncbi_country: USA: Maine

ncbi_isolation_source: foregut

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Elanco Animal Health


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC059096

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: McGill University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: cold seep

ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Mediterraneibacter massiliensis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_organism_name: Bradyrhizobium sp. LB5.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;s__Candidatus Aquabacterium excrementipullorum


ncbi_assembly_name: Rumen uncultured genome RUG11052

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Kosakonia sacchari


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Texas

ncbi_organism_name: Pseudoxanthomonas winnipegensis


ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces thermocarboxydus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: South Korea: Buyeo

ncbi_isolation_source: Root endosphere

ncbi_organism_name: Chryseobacterium sp. T16E-39

ncbi_submitter: Rural development administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC051214

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Nanjing

ncbi_isolation_source: Infected pancreatic necrosis

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Jinling Hospital, Medical School of Nanjing University


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Allosphingosinicella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Holospora elegans E1

ncbi_submitter: Yamaguchi University


ncbi_assembly_name: freshwater MAG --- Ki3-D1_bin-1320

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Yersinia alsatica

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: freshwater MAG --- D-3_bin-66

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_isolate: WNYEL

ncbi_isolation_source: nasopharynx


ncbi_country: China: Jiangxi

ncbi_isolation_source: animal gut

ncbi_organism_name: Raoultella sp. 10-1

ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Austria: small pond on the way to Gosau; Alps

ncbi_isolation_source: shallow pond

ncbi_organism_name: Limnohabitans sp. G3-2

ncbi_submitter: Biology Centre CAS


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1391 from squamous cell carcinomas patient MST003

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella sp. JB_Kp008

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Beijing

ncbi_isolate: Jia bo, Ding

ncbi_isolation_source: serum

ncbi_organism_name: Brucella canis

ncbi_strain_identifiers: Ding;Brucella.canis;Jia bo

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_submitter: Toho University


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: Taiwan

ncbi_isolation_source: bile

ncbi_organism_name: Shewanella algae

ncbi_strain_identifiers: CHL

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sedimenticola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain: Alicante

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_strain_identifiers: CITA 99

ncbi_submitter: Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA)


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Heliobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Pseudoduganella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: VA

ncbi_isolation_source: sedimentation pond in a zinc factory

ncbi_organism_name: Cupriavidus metallidurans

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stanford University


ncbi_country: France

ncbi_isolation_source: food: ham

ncbi_organism_name: Yersinia aleksiciae

ncbi_submitter: SC


ncbi_country: China: Ningxia

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Princeton University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_country: China: Zhejiang

ncbi_isolation_source: clinical

ncbi_organism_name: Providencia hangzhouensis


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: University of Antwerp


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Hungatella sp. UBA3048

ncbi_submitter: University of Queensland


ncbi_country: France: Strasbourg

ncbi_isolation_source: Rectal swab

ncbi_submitter: CHRU Besancon


ncbi_country: USA

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-786

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: James Cook University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-368


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Clostridiales bacterium UBA1381


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Germany: somewhere in SN

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: WYMQI

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG13977

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: gut (Ileum)

ncbi_organism_name: Butyricicoccus sp. Marseille-Q5471

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Huainan

ncbi_isolation_source: coal samples cultured in anaerobic conditions in minimal salts plus yeast media

ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Anhui University of Science & Technology


ncbi_isolate: STB-G

ncbi_organism_name: Mycobacterium canettii CIPT 140070005

ncbi_submitter: Genopole Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070005


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France

ncbi_isolation_source: rat (gut)

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 444

ncbi_submitter: Brigham Young University


ncbi_country: China: Wuxi

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest medical university


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Bulk milk


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_strain_identifiers: DSM 1

ncbi_submitter: Shanghai Jiao Tong Univeristy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Heyndrickxia;s__Heyndrickxia coagulans;x__Heyndrickxia coagulans DSM 1 = ATCC 7050


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentes bacterium CG1_02_42_14


ncbi_country: Australia: Tasmania

ncbi_isolation_source: hind gut digesta

ncbi_organism_name: Aliivibrio finisterrensis

ncbi_submitter: University of Tasmania


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_isolation_source: sewage


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea piersonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Acetivibrionales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA

ncbi_organism_name: Escherichia coli EC1862

ncbi_submitter: Institute for Genome Sciences


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas sp. PA-5-4H

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Segatella copri

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Chile: Lomas Bayas

ncbi_isolation_source: Atacama Desert soil

ncbi_organism_name: Micromonospora inaquosa

ncbi_submitter: Newcastle University


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Germany: Munich

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Xenorhabdus griffiniae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: USDA APHIS VS NVSL


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_isolation_source: meat

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Thermoclostridium caenicola

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Salt base soil

ncbi_organism_name: Stutzerimonas chloritidismutans

ncbi_submitter: Shandong Agricultural University


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P14RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P14RS


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Sphingobacterium multivorum


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Isoptericola variabilis


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: San Francisco; California

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of California San Francisco


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Patescibacteria group bacterium UBA6816

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6816


ncbi_organism_name: Brucella melitensis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_assembly_name: freshwater MAG --- Day2-2_bin-609

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC002466


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Methylocystis sp.


ncbi_isolate: AOP30_C2_surf _bin _9

ncbi_organism_name: Hafnia alvei

ncbi_strain_identifiers: AOP30_C2_surf _bin _9

ncbi_submitter: Genoscope


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Australia

ncbi_isolation_source: Tissue

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Melbourne


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Sphaerotilus sp.

ncbi_submitter: University of Delaware


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1205

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1205


ncbi_organism_name: Amycolatopsis mediterranei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;s__Candidatus Jorgensenbacteria bacterium CG03_land_8_20_14_0_80_38_39


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Laedolimicola sp.

ncbi_submitter: UIUC


ncbi_country: USA: New York

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: China: Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Roseomonas sp. AR75

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Pygmaiobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolate: metabat2_coassembly_bwa.273 MAG

ncbi_organism_name: Bacillota bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.273 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mozambique

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CDC


ncbi_country: Mexico: Sinaloa; El Dorado

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halothiobacillus neapolitanus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: sewage


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Alistipes sp. AF14-19

ncbi_submitter: BGI


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Aphodoplasma;s__Candidatus Aphodoplasma excrementigallinarum


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_isolate: MAG 426

ncbi_isolation_source: decomposition metagenome

ncbi_organism_name: Pseudomonas protegens

ncbi_strain_identifiers: MAG 426

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Joint Institute for Nuclear Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Indiana

ncbi_submitter: Purdue University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Jiangsu

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA4639

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4639


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Peribacter sp. UBA1555

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;x__unclassified Candidatus Peribacter;s__Candidatus Peribacter sp. UBA1555


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microbacterium sp. LB16

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: AAFC


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_isolate: SPRUCE 11

ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_strain_identifiers: SPRUCE 11

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0475

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 213

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1336

ncbi_submitter: University of Calgary


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kansas State University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Actinoplanes sp. NPDC026619

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Lysinibacillus xylanilyticus


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: wenzhou medical university


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: Rectal swab

ncbi_submitter: Geogentics


ncbi_organism_name: Rhodocyclus tenuis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland

ncbi_isolation_source: wild boar feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Melbourne

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Port Phillip Bay; Heron Island and Pacific Ocean; Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: China: Qinghai province

ncbi_isolation_source: feces

ncbi_organism_name: Actinomyces sp. 2119

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Bacillus pseudomycoides


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_organism_name: Megamonas funiformis


ncbi_country: Thailand: Nakorn Prathom

ncbi_isolation_source: Giant freshwater prawn farm

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Oral

ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: King's College London


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK192

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03689

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 136 (4-5970458)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 136 (4-5970458)


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology