ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Carnobacteriaceae bacterium 52-44

ncbi_submitter: Nanjing University


gtdb_representative: f

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: 4i spring

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_level: Contig

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Arkansas

ncbi_isolation_source: shrimp

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Keri Norman's shared submissions


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_submitter: Texas Tech University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-110-08_S3_C3

ncbi_submitter: IGS


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: Stockholm University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonella atypica

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFOXYA2_FULL_46_9


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptomyces sp. NPDC004959

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Micromonospora sp. WMMD736

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces sp. NPDC058463


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NBC_00057

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Moraxellaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Paenibacillus larvae subsp. larvae

ncbi_submitter: University of Idaho


ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Genopole Institut Pasteur


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus sp. DIV2391

ncbi_submitter: Broad Institute


ncbi_organism_name: Iodobacter arcticus

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Chlamydiae bacterium Ga0074140

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Chlamydiae bacterium Ga0074140

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium Ga0074140


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: burned soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: CA

ncbi_organism_name: Enterobacter kobei


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Biogas reactor

ncbi_organism_name: Mesotoga infera

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.


ncbi_country: American Samoa

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Leptolyngbya sp. SIO1E4

ncbi_submitter: UCSD


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Planctomycetaceae bacterium SH248

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Biology


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China

ncbi_isolation_source: brewing environment of Maotai-flavor liquor

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Kweichow Moutai Distillery


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Human

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Sierra Leone

ncbi_isolation_source: blood samples from outpatients

ncbi_organism_name: Salmonella sp. WGH-01

ncbi_submitter: beijing


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Wenyingzhuangia heitensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- F4_bin-050

ncbi_isolation_source: pond

ncbi_submitter: BILS


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolate: metabat2_6755_HET_CTRL_metaflye.524 MAG

ncbi_organism_name: Lactobacillus crispatus

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_metaflye.524 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: screen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Factory - Opening

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: United Kingdom

ncbi_organism_name: Mycoplasmoides fastidiosum

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium


ncbi_isolation_source: unknown


ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_country: China: Shandong

ncbi_isolation_source: joint fluid from a patient with rheumotoid arthritis

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_country: Australia

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_country: Australia: Victoria

ncbi_organism_name: Glaesserella sp. 15-184

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2633

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Madagascar

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 795

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P3B

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P3B


ncbi_organism_name: Segatella copri

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Fusobacterium nucleatum

ncbi_strain_identifiers: FNP

ncbi_submitter: Shandong University


ncbi_assembly_level: Chromosome

ncbi_organism_name: uncultured Hormoscilla sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_country: USA

ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Suzhou

ncbi_organism_name: Virgibacillus proomii

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Adlercreutzia caecimuris


ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Ormstown; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas alvandae

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Antibiotics


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: CRN 21

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: India: Mahatma Gandhi Hospital

ncbi_isolation_source: CSF

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0158

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Norway

ncbi_isolation_source: gutting machine in salmon factory

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: NTNU


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Manitoba


ncbi_organism_name: Quisquiliibacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alaska Anchorage


ncbi_country: USA: Bend; Oregon

ncbi_isolation_source: arid; high desert soil

ncbi_organism_name: Streptomyces sp. CL12-4

ncbi_submitter: University of Florida


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of California at Davis


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0034


ncbi_organism_name: Xanthomonas campestris pv. trichodesmae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 39

ncbi_submitter: Lebanese American University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Kiritimatiellia bacterium


ncbi_organism_name: Lawsonibacter sp.


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of California Berkeley


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Instituto de Quimica


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Acinetobacter baumannii WM99c

ncbi_submitter: Macquarie University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0921

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacillus spizizenii str. W23

ncbi_submitter: Bacillus Genetic Stock Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus spizizenii;x__Bacillus spizizenii str. W23


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Luteimonas lutimaris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Treponema sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bradyrhizobium vignae

ncbi_submitter: IRD


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Ennomos erosarius


ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_name: Rumen uncultured genome RUG577

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_assembly_name: IMG-taxon 2651870114 annotated assembly

ncbi_organism_name: Cyclobacterium xiamenense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: France

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas Health Science Center at Houston


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Pseudomonadales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Escherichia whittamii

ncbi_submitter: AgResearch Limited


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: Tokyo Dental Collage


ncbi_organism_name: Streptomyces yangpuensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MAMI


ncbi_organism_name: Actinotignum sp. GS-2025e

ncbi_submitter: University Hospital Basel


ncbi_country: Russia: Sverdlovsk Region

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Bahamas

ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: India: Chikkanayakanahalli village and taluk; Tumkur district; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Florida


ncbi_organism_name: Variovorax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_submitter: Government of Canada


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanyang Technological University


ncbi_country: Arctic Ocean

ncbi_isolation_source: brown alga

ncbi_organism_name: Shewanella polaris

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Campylobacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;x__environmental samples;s__uncultured Campylobacterota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14760

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0071

ncbi_submitter: Broad Institute


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Legionella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Bengbu

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Japan

ncbi_isolation_source: open abscess

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: Wild bird feces

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Egypt

ncbi_isolation_source: Desert soil

ncbi_organism_name: Streptomyces sp. DH12

ncbi_submitter: Ain Shams University


ncbi_country: USA: MI

ncbi_organism_name: Rhodococcus sp. 06-470-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 06-470-2


ncbi_isolation_source: environmental waters


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: IGA Technology Services Srl


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: EPFL


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Ahniellaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Padova


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Gordonibacter pamelaeae


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_isolation_source: food production metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Clostridioides difficile CD68

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-3609

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Victoria

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Federation University Australia


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Ireland: Dublin

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Academia Sinica


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Alaska Anchorage


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Serinicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Hong Kong: Kam Shan

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of California, Davis


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPBD4-3

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: lake in Milstatter See

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chamaesiphon polymorphus CCALA 037

ncbi_strain_identifiers: CCALA 037


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Helicobacter pylori SS1

ncbi_submitter: Monash Institute of Medical Research


ncbi_country: Italy: Cesano Maderno; Monza e Brianza

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Gracilimonas sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Beijing

ncbi_organism_name: Flintibacter hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: USA: Provincetown; MA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas moorei

ncbi_submitter: Midwestern University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecium 1,231,408

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: University Hospital of Abidjan-Cocody

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_country: China: Dingxi of Gansu province

ncbi_isolation_source: cabbage leaves

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptomyces caelestis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas hyacinthi

ncbi_submitter: INRA


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: EMG


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 5

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universiteit Antwerpen


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Colombia: Bolivar

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: Japan: Aichi; Inuyama

ncbi_isolation_source: chimpanzee

ncbi_organism_name: Streptococcus troglodytae

ncbi_strain_identifiers: TKU 31

ncbi_submitter: Tsurumi University, School of Dental Medicine


ncbi_organism_name: Paenibacillus sp. 3LSP

ncbi_submitter: Anand Agricultural University


ncbi_country: China

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Antarctica: King George Island; Uruguayan Lake

ncbi_isolation_source: Water sample; lake

ncbi_organism_name: Hymenobacter sp. UV11

ncbi_submitter: Facultad de Ciencias


ncbi_country: France: Paris

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bradyrhizobium sp. AZCC 2289

ncbi_strain_identifiers: AZCC 2289

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan: Chia-Yi

ncbi_isolation_source: urine

ncbi_submitter: Chung Shan Medical University


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: France: Bordeaux

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptomyces coelicolor A3(2)

ncbi_strain_identifiers: ICSSB 1010


ncbi_organism_name: bacterium


ncbi_organism_name: Mitsuokella multacida


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Rhodospirillaceae bacterium Z3-40

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Pseudomonas sp. LLb12B

ncbi_submitter: LMU Munich


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_isolation_source: Strawberry

ncbi_organism_name: Gluconobacter frateurii

ncbi_strain_identifiers: NBRC 3264

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR22b

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Zhangjiakou

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. TH59

ncbi_submitter: University of Alaska Fairbanks

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TH59


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA: Trunk River; Woods Hole; Massachusetts

ncbi_isolation_source: microbial mat material from brackish estuary

ncbi_organism_name: Marichromatium sp. AB31

ncbi_submitter: Department of Biology, Washington University in St. Louis


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Komagataeibacter sucrofermentans DSM 15973

ncbi_submitter: ETH Zurich


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xylanibacter caecicola


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Fen

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Micromonospora purpureochromogenes

ncbi_strain_identifiers: NRRL B-2672

ncbi_submitter: University of Illinois


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: USFDA


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Cyanobacteria bacterium J06628_6

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06628_6


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 106

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 105

ncbi_submitter: University of Calgary


ncbi_country: Ukraine: Mariupol

ncbi_isolation_source: sewage

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolate: Acidobacteria sp. RBC020

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_strain_identifiers: Acidobacteria sp. RBC020

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-290

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-290


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Qilu University of Technology, Shandong Academy of Sciences


ncbi_country: Colombia

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_isolation_source: Sheep

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Salmonella sp. NW3

ncbi_submitter: Sichuan University


ncbi_country: USA: MidWest; turkey breeder farm 20

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Italy: Verona

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium platyrrhinorum

ncbi_submitter: University of Bologna


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Regensburg

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F29447

ncbi_submitter: Broad Institute


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia mollaretii


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Lacinutrix sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Dolosicoccus paucivorans

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_organism_name: Staphylococcus sp. 50Mo3-1

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Streptomyces sp. NPDC127108


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: university of alicante


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Delftia deserti

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_organism_name: Thioalkalivibrio sp. AKL19

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden

ncbi_isolation_source: drain

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Fermenting string beans

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_submitter: Northeast Agricultural University


ncbi_country: Spain: Asturias

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7154

ncbi_submitter: University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_assembly_name: Rumen uncultured genome hRUG907

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Yantai

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Yuhuangding hospital


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Hydrogenophilales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital Affiliated to Shandong University


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: California; Modesto

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_submitter: Karolinska Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: bacterium


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Agriculture in Krakow


ncbi_organism_name: Vreelandella maris

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_country: Norway

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: blood

ncbi_organism_name: Pseudocitrobacter sp. 73

ncbi_submitter: University of Sao Paulo


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: infant feces

ncbi_organism_name: Lacticaseibacillus rhamnosus L35

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolate: Cupriavidus taiwanensis STM 8564

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis STM 8564

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Queensland


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Lithuania

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Alberta


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Japan:Ibaraki; Lake Kasumigaura

ncbi_isolation_source: water

ncbi_organism_name: Microcystis aeruginosa NIES-3804

ncbi_submitter: National Institute for Environmental Studies


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Lernaella stagnicola

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Lernaellota;c__Candidatus Lernaellaia;o__Candidatus Lernaellales;f__Candidatus Lernaellaceae;g__Candidatus Lernaella;s__Candidatus Lernaella stagnicola


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gansu; Baiyin

ncbi_isolation_source: Copper Mine

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: Central South University


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: India: Mizoram

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Spain

ncbi_isolation_source: nodules

ncbi_organism_name: Micromonospora alfalfae

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: cheese Grana Padano

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2113


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Geobacillus kaustophilus NBRC 102445

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus;x__Geobacillus thermoleovorans group;s__Geobacillus kaustophilus;x__Geobacillus kaustophilus NBRC 102445


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: USA: Texas

ncbi_organism_name: Pantoea anthophila


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Reunion

ncbi_organism_name: Streptobacillus moniliformis

ncbi_strain_identifiers: Marseille

ncbi_submitter: Robert Koch Institute


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces koyangensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphingomonas agri

ncbi_submitter: SECOND INSTITUTE OF OCEANOGRAPHY, MNR


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: India

ncbi_isolation_source: Nasal discharge

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: ICAR National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kaistiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Psychrobacter immobilis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Paraperibacillus esterisolvens

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: OSS 476

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Dehalococcoidia bacterium UBA6227

ncbi_submitter: University of Queensland


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Methylobacterium sp. ME121

ncbi_submitter: Toyo University


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: Malaysia: Johor

ncbi_isolation_source: river in Endau-Rompin National Park

ncbi_organism_name: Aquitalea magnusonii

ncbi_submitter: University of Malaya


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: University of Exeter


ncbi_country: Australia: Brisbane

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus agalactiae GD201008-001

ncbi_submitter: College of Veterinary Medicine, Nanjing Agricultural  University


ncbi_submitter: UNIVERSITY OF SEVILLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhoushan

ncbi_isolation_source: coastal sea water [ENVO:00002150]

ncbi_organism_name: Croceibacterium aestuarii

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_01_FULL_39_63


ncbi_country: Romania: Bucarest

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Italy: L Aquila

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSAM


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: USA: Carlsbad Caverns National Park

ncbi_organism_name: Streptomyces buecherae

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: China: Qingdao

ncbi_isolation_source: food animal chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural University


ncbi_submitter: University of Georgia


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Rhodanobacter sp. MP1X3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2622736627 annotated assembly

ncbi_organism_name: Carnobacterium iners

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12388

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


gtdb_type_species_of_genus: t

ncbi_organism_name: Benzoatithermus flavus

ncbi_strain_identifiers: SYSU G07066

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_isolate: AOP35_05H_surf _bin _13

ncbi_organism_name: Leucobacter sp.

ncbi_strain_identifiers: AOP35_05H_surf _bin _13

ncbi_submitter: Genoscope


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_country: USA: California ex Mexico

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Aromatoleum aromaticum EbN1

ncbi_submitter: Max Planck Institute


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3049

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Dermacoccus nishinomiyaensis


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: France

ncbi_isolation_source: vagina

ncbi_organism_name: Brucella anthropi

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Science, Chulalongkorn University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom: Tyne estuary

ncbi_isolate: bin 27

ncbi_isolation_source: estuary sediment; 279h at 80; CS

ncbi_organism_name: Thermosediminibacteraceae bacterium

ncbi_strain_identifiers: bin 27

ncbi_submitter: Newcastle University


ncbi_country: Saudi Arabia: Makkah

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_country: USA: MD

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Indian Institute of Technology


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Owenweeksia sp.


ncbi_organism_name: Salmonella sp. 741265097_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces cinereospinus

ncbi_strain_identifiers: CGMCC 4.163

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: BGI Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Streptomyces sp. NBC_00045

ncbi_submitter: Technical University of Denmark


ncbi_isolate: AOP26_G1_coeur _bin _3

ncbi_organism_name: Pseudolactococcus laudensis

ncbi_strain_identifiers: AOP26_G1_coeur _bin _3

ncbi_submitter: Genoscope


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Galway


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: LNCC


ncbi_country: China: Gansu; Aksay

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Halanaerobacter sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Proteus sp. HMSC14B05

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. HMSC14B05


ncbi_assembly_name: JGI assembly

ncbi_country: India: Jharkhand; Surajkund

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Tepidiphilus thermophilus

ncbi_submitter: DOE - Joint Genome Institute


ncbi_country: China

ncbi_organism_name: Trichormus variabilis FACHB-171

ncbi_submitter: South China Normal University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Yonsei University


ncbi_assembly_name: freshwater MAG --- MJ110516B_bin-0342

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guangdong

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- KT_bin-0655

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_isolation_source: tundra soil

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Rikenellaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: feces from female

ncbi_organism_name: Escherichia coli TOP2522-1

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9055

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: New York

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila limnetica

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila limnetica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila limnetica


ncbi_country: China: Beijing

ncbi_isolation_source: bronchoscopy secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonas paracarnis

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Slovenia

ncbi_isolation_source: Broiler

ncbi_submitter: Veterinary Faculty

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Sichuang

ncbi_isolation_source: ground pork

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_country: USA

ncbi_isolation_source: Mus musculus

ncbi_submitter: Georgia State University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Spain: Carmona; Sevilla

ncbi_isolation_source: Lab maintained population of field collected O. laevigatus

ncbi_organism_name: Serratia sp. OLHL2

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. OLHL2


ncbi_isolation_source: Interal medicine

ncbi_submitter: Guangzhou Medical University


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: China Medical University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE