ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Niallia circulans

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The Second Affiliated Hospital of Guangzhou Medical University


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_level: Scaffold

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3781

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: uncultured Blautia sp.


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Nostoc parmelioides FACHB-3921

ncbi_refseq_category: reference genome

ncbi_submitter: South China Normal University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: India

ncbi_isolation_source: Insect gut

ncbi_organism_name: Aeromonas veronii

ncbi_strain_identifiers: CMF

ncbi_submitter: Visva-Bharati University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin012

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin012


ncbi_organism_name: Escherichia coli

ncbi_submitter: Soochow University


ncbi_country: China: Huzhou

ncbi_isolation_source: stool sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou cdc


ncbi_organism_name: Peptoniphilus harei


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ausgem


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: Trichoptera larvae from lake water

ncbi_organism_name: Streptomyces sp. IB2014 011-1

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Poland

ncbi_isolation_source: Processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium falsenii

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: human nasal swab

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sp. F0441

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: National Research Council


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Rikenella sp.


ncbi_country: United Kingdom

ncbi_submitter: Weill Cornell Medical College


ncbi_country: Russia: Yekaterinburg

ncbi_isolation_source: patient s blood plasma

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_organism_name: Bacteroides ovatus CL02T12C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Heilongjiang province

ncbi_organism_name: Sphingobacterium sp. BN32

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Bangladesh

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Cardiff University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P198P

ncbi_submitter: South China Agricultural University


ncbi_country: Morocco

ncbi_isolation_source: blood

ncbi_submitter: Hopital Bicetre, APHP Paris-Saclay


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Citrobacter portucalensis


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Madison; WI

ncbi_isolation_source: sludge collected from the acid-phase digester of a two-phase anaerobic digestion process at the Madison Metropolitan Sewerage Disctrict Nine Springs Facility

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Haifa


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Henan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: stool


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Oahu; Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio natriegens

ncbi_submitter: Synthetic Genomics, Inc.


ncbi_organism_name: Bacillus cereus SJ1

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus SJ1


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea university


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Salmonella sp. NW14

ncbi_submitter: Sichuan University


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Public Health England


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_isolation_source: coastal seawater of Jeju Island

ncbi_organism_name: Gayadomonas joobiniege G7

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: caecum

ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: Kefir grains

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_country: China: Jiangsu

ncbi_submitter: Yangzhou University


ncbi_organism_name: Hoylesella enoeca JCM 12259

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Hoylesella;s__Hoylesella enoeca;x__Hoylesella enoeca JCM 12259


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Microbispora bryophytorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Pseudoxanthomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: LM05-00172 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Enterorhabdus sp.


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Ohio

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ohio State University


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Jilin

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_submitter: University of Alberta


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: mBioClim


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_isolation_source: pus

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Chlorobium phaeobacteroides

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Rhizobium etli

ncbi_strain_identifiers: SEMIA 471

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Christensenella sp. UBA7102


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B11(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Runella sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea: Boseong

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: EMG


ncbi_country: China: Changhsha

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: College of Plant Protection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: respiratory

ncbi_strain_identifiers: MGH 44

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Japan:Hiroshima; higashihiroshima; Budou-ike in Hiroshima university

ncbi_organism_name: Metapseudomonas resinovorans

ncbi_submitter: Department of Civil and Environmental Engineering, Graduate School of Engineering, Hiroshima University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: Thailand

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Clostridium felsineum

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Bangladesh: Kishoreganj

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Central Disease Investigation Laboratory (CDIL)


ncbi_assembly_name: Rumen uncultured genome RUG12123

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Hyphomonadaceae bacterium UBA2389

ncbi_submitter: University of Queensland


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: Ngtc NS 21

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Princeton University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Yushu City;Qinghai Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Nocardioides sp. cx-173

ncbi_submitter: China CDC


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Shandong Province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: lake water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_isolation_source: Dental biofilm

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Ireland

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University College Cork


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_T_2

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces tritrimontium

ncbi_submitter: University of Gdansk


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_isolate: SPRUCE 530

ncbi_organism_name: Minisyncoccia bacterium

ncbi_strain_identifiers: SPRUCE 530

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0105

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- KR_bin-1609

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Cronobacter muytjensii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: Greece: Piraeus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florence


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Lebanon

ncbi_isolation_source: Ambriss

ncbi_organism_name: Lactobacillus kefiranofaciens

ncbi_submitter: DTU


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Emek


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: China: HeBei

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: Thioalkalivibrio sp. ALJ10

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Poland: Pruszkow

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_submitter: National University of Singapore


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0633

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Changwon

ncbi_isolation_source: human skin swab

ncbi_organism_name: Methylorubrum sp. B1-46

ncbi_submitter: Changwon National University


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bartonella apihabitans

ncbi_submitter: Instituto Gulbenkian de Ciencia


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of Southern California


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: North Carolina

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: Russia: Moscow

ncbi_isolation_source: digestive system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SRCAMB


ncbi_country: Colombia

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Staphylococcus aureus DAR5794


ncbi_country: South Korea

ncbi_isolation_source: brakish lake Shihwa

ncbi_organism_name: Lacinutrix neustonica

ncbi_submitter: Seoul National University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: Norway

ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: NTNU


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Anaerococcus tetradius


ncbi_country: Colombia: Guasca

ncbi_organism_name: Streptomyces sp. JH34

ncbi_submitter: Universidad de los Andes


ncbi_country: New Zealand

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella aerogenes


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Staphylococcus aureus M1001

ncbi_submitter: Broad Institute


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Xiamen University


ncbi_country: China

ncbi_isolation_source: spice

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Nan Jing

ncbi_isolation_source: Blood culture medium

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: Philippines

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Philippine Genome Center


ncbi_organism_name: Mycoplasmoides fastidiosum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Thalassobellus suaedae

ncbi_submitter: Seoul National University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0148

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Parafilimonas sp.

ncbi_submitter: BILS


ncbi_organism_name: Dyella sp. SG562


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mobiluncus sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Heiligendamm

ncbi_isolation_source: polystyrene

ncbi_organism_name: Polystyrenella longa

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: SRCAMB


ncbi_country: Hungary: Zempln Mountain

ncbi_isolation_source: ileum

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Hungarian University of Agriculture and Life Sciences


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Intrauterine purulent content

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2622736510 annotated assembly

ncbi_organism_name: Psychroflexus sediminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: guangxi

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: IMG-taxon 2582580749 annotated assembly

ncbi_organism_name: Desulfofundulus australicus DSM 11792


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__environmental samples;s__uncultured Candidatus Accumulibacter sp.


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: uncultured Acutalibacteraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Nonlabens sp. Asnod2-A12

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Sulfurihydrogenibium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: uncultured Spirochaetia bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Iceland

ncbi_organism_name: Thermus igniterrae ATCC 700962

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Thermales;f__Thermaceae;g__Thermus;s__Thermus igniterrae;x__Thermus igniterrae ATCC 700962


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: NY; Buffalo

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae 2019

ncbi_submitter: University of Iowa


ncbi_organism_name: Escherichia coli O157

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Candidatus Megamonas gallistercoris

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Chicken Meat

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Antarcticibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Cambridge; MA

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster;s__Enterocloster hominis (ex Liu et al. 2021)


ncbi_organism_name: Bradyrhizobium sp. TM239

ncbi_submitter: Tohoku univ.


ncbi_country: Australia: WA; Brokton

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. BR1-1-12

ncbi_submitter: Curtin University


ncbi_country: France

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paraburkholderia terrae NBRC 100964

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_assembly_level: Chromosome

ncbi_submitter: Mount Sinai School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: anaerobic sludge [ENVO:00002129]

ncbi_organism_name: Tepidanaerobacter syntrophicus

ncbi_strain_identifiers: OL

ncbi_submitter: AIST


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: femorotibial joint

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1390

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Sweden

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Agency of Sweden


ncbi_country: China: Hong Kong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA1_Parcubacteria_45_10


ncbi_organism_name: Klebsiella sp. CB_Kp203

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus CHOC6056


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Wallbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Walliibacteriota;x__unclassified Candidatus Wallbacteria;s__Candidatus Wallbacteria bacterium


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Shewanella insulae

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: USA: Illinois

ncbi_isolation_source: Pea nodule

ncbi_strain_identifiers: USDA 2370

ncbi_submitter: UPM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. viciae;x__Rhizobium leguminosarum bv. viciae USDA 2370


ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: South Korea

ncbi_isolation_source: sludge

ncbi_organism_name: Nocardioides daejeonensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Falsiroseomonas selenitidurans

ncbi_submitter: Shandong University of Technology


ncbi_assembly_name: Rumen uncultured genome RUG11687

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Selenomonas bovis

ncbi_submitter: University of Manitoba


ncbi_country: China: Beijing

ncbi_isolation_source: Abscess

ncbi_submitter: China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bordetella pertussis I036

ncbi_submitter: JCVI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mycobacterium tuberculosis KT-0096

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Streptomyces sp. NPDC015237


ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Pseudomonas sp. CBSPCAW29

ncbi_submitter: Umea university


ncbi_assembly_name: Xanthomonas sp. CPBF 766 hybrid assembly 2

ncbi_isolate: Xanthomonas euroxanthea CPBF 766 isolated from C. illinoinensis

ncbi_organism_name: Xanthomonas euroxanthea

ncbi_submitter: CIBIO-Inbio


ncbi_assembly_name: Rumen uncultured genome RUG13162

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces misionensis


ncbi_organism_name: Halieaceae bacterium WMMBA7

ncbi_submitter: Quanzhou Normal University


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: University of Toronto


ncbi_assembly_name: Rumen uncultured genome RUG12888

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_submitter: Bacteriology1, National Institute of Infectious Diseases - Japan


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Victivallaceae bacterium


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Excrementavichristensenella;s__Candidatus Excrementavichristensenella intestinipullorum


ncbi_organism_name: uncultured bacterium


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Neisseria sp.


ncbi_country: Spain

ncbi_organism_name: Methylorubrum extorquens

ncbi_submitter: Technical University of Denmark


ncbi_country: Italy: Foggia

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: University of Foggia


ncbi_country: China: Hunan province

ncbi_isolation_source: Surface soil of a Manganese mine

ncbi_organism_name: Sphingopyxis sp. QXT-31

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: isolated from Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: Germany

ncbi_submitter: Muenster university hospital, University of Muenster,


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Turicibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom:Midlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 339

ncbi_submitter: SC


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: forest district Lendershagen

ncbi_isolation_source: compound leaves

ncbi_organism_name: Luteimonas fraxinea

ncbi_submitter: Leibniz Centre for Agricultural Landscape Research (ZALF)


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Harvard University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Hong Kong: Clear Water Bay

ncbi_isolation_source: sewage

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: China: Jiangsu

ncbi_isolation_source: nasal cavity

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Heyndrickxia acidicola

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Morganella morganii

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Japan

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: New Zealand: Auckland

ncbi_isolation_source: Specimen

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Trinity College Dublin


ncbi_isolation_source: Pistachio

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Pseudonocardia sp. T1-2H

ncbi_submitter: Chungnam National University


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 107

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 67

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_country: USA: Washington DC

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Italy: Emilia Romagna; Casola Valsenio

ncbi_isolation_source: seeds

ncbi_organism_name: Bacillus sp. OR9

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OR9


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Prochlorococcus sp. MIT 0701

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Stecheria intestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: South Korea: Miyang-myeon; Anseong-si; Gyeonggi-do

ncbi_isolation_source: orchard

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter sp. zg-Y1110

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: Ohio

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ohio State University


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Blautia sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Arthromitus sp. SFB-mouse-SU

ncbi_strain_identifiers: SFB-mouse-SU

ncbi_submitter: Stanford University, Relman Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-mouse-SU


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Sphingobacterium siyangense


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Ruminococcaceae bacterium UBA3451

ncbi_submitter: University of Queensland


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Medical Research Center of Phthisiopulmonology and Infectious Diseases


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_assembly_name: IMG-taxon 2671180035 annotated assembly

ncbi_organism_name: Pseudomonas graminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_isolation_source: throat swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_country: South Africa

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 890

ncbi_submitter: The Xanthomonas Threats project


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli O157:H7 str. EDL933

ncbi_submitter: University of California San Diego

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EDL933


ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micromonospora sp. NPDC050695

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium


ncbi_isolate: metabat2_pooled_hicanu.219 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_pooled_hicanu.219 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: uncultured Paludibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Streptomyces sp. NPDC015684


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: National Jewish Health


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Bern


ncbi_organism_name: Cellulosimicrobium cellulans


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Luteolibacter sp.


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Sheffield


ncbi_organism_name: Paraconexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: deep sea sediment sample 4871-20 in thermophilic enrichment culture

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Sink swab

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human duodenal aspirate

ncbi_organism_name: uncultured Aggregatibacter sp.

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0844

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: Tap water

ncbi_organism_name: Mycobacterium ostraviense

ncbi_submitter: University of Lodz


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Vibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Brucella intermedia

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA/CDC


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Oenococcus oeni AWRIB418

ncbi_submitter: The Australian Wine Research Institute


ncbi_country: Malaysia: Tioman Island; Pahang

ncbi_isolation_source: marine sediment

ncbi_organism_name: Nonomuraea sp. MG754425

ncbi_submitter: University of Malaya


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: Oral

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: King's College London


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: LM-UGent


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4567_28 depth 0-3 cm

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Kitasatospora sp. NPDC059673

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Daqing

ncbi_isolation_source: Oil-contaminated soil

ncbi_organism_name: Salipaludibacillus daqingensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Shigella boydii

ncbi_submitter: Institut Pasteur


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Rhodobacterales bacterium HTCC2255

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Czech Republic: pond Jiricka

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. JS-JIR-5-A7

ncbi_submitter: University of Innsbruck


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France: Les Dombes

ncbi_isolation_source: Water from lake

ncbi_organism_name: Dickeya lacustris

ncbi_submitter: University of Hawaii


ncbi_country: China: Zhejiang

ncbi_isolation_source: laboratory

ncbi_submitter: zhejiang University


ncbi_assembly_name: freshwater MAG --- T7_bin-604

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: Greenland: Northern Greenland; Sirius Passet

ncbi_isolation_source: Oxyria rhizosphere soil

ncbi_organism_name: Pseudomonas sp. G2-4

ncbi_submitter: Korea Polar Research Institute


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Deferribacteraceae bacterium UBA6793


ncbi_country: Spain: Leon

ncbi_isolation_source: food-contact surface

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbiome Applications for Sustainable food systems through Technologies and EnteRprise


ncbi_organism_name: Streptomyces minutiscleroticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: IMG-taxon 2684623006 annotated assembly

ncbi_organism_name: Mucilaginibacter sp. OK283

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: Uzon Caldera; Kamchatka; Arkashin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Mesoaciditoga lauensis

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Wenzhou-Kean University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Psychrobacter cryohalolentis

ncbi_submitter: Erzurum Tech Uni


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Tabrizicola soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lacrimispora sp.


ncbi_organism_name: Streptomyces sp. NPDC014872

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Bacillus tropicus


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Russia: Nefteyugansk

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. 7-41

ncbi_submitter: IBPM RAS


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0867

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Food and Drug Administration


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Norway: Trondheim

ncbi_isolation_source: Rectal screening

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_organism_name: Bacteroides uniformis


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: South Korea

ncbi_isolation_source: Doenjang

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institue for Fermentation Industry


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Actinosynnema mirum DSM 43827

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Tang lab


ncbi_country: China: Sichuan

ncbi_isolation_source: Ear canal secretions

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Tidjanibacter massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: Forest soil

ncbi_organism_name: Paraburkholderia solisilvae

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Pakistan: Isb

ncbi_isolation_source: probiotic supplement

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: NIBGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Variovorax sp. AB1(2024)

ncbi_submitter: University of Exeter


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Mycolicibacter sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Vulcanococcus sp. CPBay_Sum20G08_28

ncbi_submitter: Clemson University


ncbi_country: Turkey: Black sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Micromonospora yasonensis

ncbi_submitter: Chulalonkorn University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_organism_name: Thermus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA

ncbi_isolation_source: Turkey cecum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_country: Netherlands

ncbi_isolation_source: potato rhizosphere

ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Lactobacillus iners


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Butyricimonas faecihominis


ncbi_country: Mexico: Baja California Sur; Pacific Ocean

ncbi_isolation_source: digestive gland

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Universidad Autonoma de Baja California Sur


ncbi_country: India

ncbi_isolation_source: endotracheal aspirate

ncbi_submitter: Christian Medical College


ncbi_country: France: Pontoise

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: USA: Oklahoma

ncbi_organism_name: Bartonella henselae

ncbi_strain_identifiers: 88-64 Oklahoma

ncbi_submitter: University Hospital, Goethe University Frankfurt am Main, Germany


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Brazil: Tocantins

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Sichuang

ncbi_isolation_source: fish viscera

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 121 (4-6877826)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 121 (4-6877826)


ncbi_country: India: Hessaraghatta suburban village; Bengaluru North taluk; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA: New Pass Inlet; Sarasota; Florida

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Halomonas sp. 707D7

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_organism_name: Pseudescherichia vulneris


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: shandong university


ncbi_country: China: Yujia Mountain;Wuhan

ncbi_isolation_source: Antibiotic contaminated soil

ncbi_organism_name: Pseudomonas sp. CIP-10

ncbi_submitter: Huazhong University of Science and Technology


ncbi_country: Hungary: Szeged

ncbi_isolation_source: engineered variant of Escherichia coli BL21(DE3)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seqomics Ltd.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Walailak University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Schaedlerella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: Centre of Biosciences of the Slovak Academy of Sciences


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB NOVA


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella sp. SKLX119033

ncbi_submitter: Zhejiang university


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Niveibacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacillus mycoides

ncbi_strain_identifiers: TIAC 4375

ncbi_submitter: Ghent University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolate: SPRUCE 365

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 365

ncbi_submitter: Georgia Institute of Technology