ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA5160

ncbi_submitter: University of Queensland


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: Great Salt Lake

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


gtdb_representative: f

ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_submitter: Mahatma Gandhi Medical College & Research Institute,


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Chromosome

ncbi_organism_name: Atrimonadaceae bacterium G-SL-SR-0-11

ncbi_submitter: East China University of Science and Technology


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14353

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Luteococcus japonicus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Thammasat University


ncbi_organism_name: Salmonella sp. NW341

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Parafilimonas sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_country: Germany

ncbi_isolation_source: Raw sausage

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolate: chicken fecal

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Kenya

ncbi_submitter: Masinde Muliro University of Science and Technology


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Streptomyces narbonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Processed minced meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Johannesburg


ncbi_country: United Kingdom

ncbi_isolation_source: Subacute bacterial endocarditis

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: University of Malaya


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Lebanon

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LAU


ncbi_organism_name: Sphingobacterium faecium

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Complete Genome

ncbi_country: Pacific Ocean: Monterey Canyon

ncbi_isolation_source: gills from mollusc collected from dive Ventana 2338

ncbi_organism_name: Candidatus Ruthia sp. Crec_9_S17

ncbi_submitter: Universite de Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthia sp. Crec_9_S17


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Anaerobutyricum sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus OCMM6015

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus VET0126R


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Xenorhabdus koppenhoeferi

ncbi_strain_identifiers: Vera

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_organism_name: Ligilactobacillus ruminis ATCC 27782

ncbi_submitter: Microbiology Dept, University College Cork


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: India: Uttar Pradesh; Deoria; Savreji

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides marinus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Monash University


ncbi_isolation_source: Seawater from a depth of 6000 m

ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Nova Scotia

ncbi_isolation_source: endocervix

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Mesorhizobium sp. M0011

ncbi_submitter: Washington State University


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Xenophilus sp. L33

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 209

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 3912

ncbi_submitter: University of Calgary


ncbi_organism_name: Brevundimonas bullata

ncbi_submitter: University of Turku


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Ulcer

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_organism_name: Roseomonas sp. BN140053

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2518645622 annotated assembly

ncbi_organism_name: Streptomyces sp. LaPpAH-199

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;x__unclassified Streptomyces griseus subgroup;s__Streptomyces sp. LaPpAH-199


ncbi_organism_name: Ramlibacter sp. 2FC

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptomyces sp. NPDC007063

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium CSU_1_3

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Ontario; Field site

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Aromatoleum sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Sporosarcina newyorkensis


ncbi_isolation_source: duck cloacal

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_country: Brazil

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio maritimus

ncbi_strain_identifiers: CAIM 1455

ncbi_submitter: CIAD, A.C. Mazatlan Unit for Aquaculture


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: cecum

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Prochlorothrix sp. CTOTU29313


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: France

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_isolate: faeces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Guangxi Veterinary Research Institute


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Thermodesulfatator atlanticus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridium culturomicium

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Institute of animal husbandry and veterinary medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Norway: Sogn og Fjordane

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter gerneri;x__Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: Hong Kong

ncbi_isolation_source: bioreactor treating fresh wastewater containing high content of P but low salinity

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Lacinutrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: uncultured Candidatus Pelethenecus sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__Mollicutes incertae sedis;g__Candidatus Pelethenecus;x__environmental samples;s__uncultured Candidatus Pelethenecus sp.


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Conexibacter sp.


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Affiliated Hospital of Southwest Medical University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_assembly_name: Bacillus JRS10

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Liverpool


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces coeruleorubidus

ncbi_submitter: KAIST


ncbi_organism_name: Nocardia beijingensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Vagococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Pantoea sp. AS142

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Ignavibacteriaceae bacterium


ncbi_country: Malaysia

ncbi_isolate: soil

ncbi_organism_name: Pandoraea pnomenusa 3kgm

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: INRAE


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Snodgrassella sp. B3882

ncbi_submitter: China Agricultural University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Bio-LAb Co.,Ltd.


ncbi_country: China: Beijing

ncbi_isolate: china

ncbi_organism_name: Candidatus Portiera aleyrodidarum

ncbi_strain_identifiers: china

ncbi_submitter: Chinese Academy of Agricultural Science Institute of Vegetables and Flowers

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC050743

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand

ncbi_isolation_source: soil from paddy field

ncbi_organism_name: Nocardia aurantiaca

ncbi_submitter: Chulalongkorn University


ncbi_isolate: swine fecal

ncbi_strain_identifiers: swine fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 217

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 3102

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Yunnan agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Loc090402-4m_bin-0578

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Austria

ncbi_organism_name: Anoxybacteroides tepidamans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Albany

ncbi_isolation_source: indoor dust from athletic faciility office

ncbi_organism_name: Pseudomonas luteola

ncbi_submitter: Northwestern University


ncbi_organism_name: Roseibium aquae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: WV; Huntington

ncbi_isolation_source: derived from laboratory strain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Hong Kong

ncbi_organism_name: Escherichia sp. E4385

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: Canada

ncbi_organism_name: Solitalea canadensis DSM 3403

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Solitalea;s__Solitalea canadensis;x__Solitalea canadensis DSM 3403


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_submitter: University of Technology Sydney

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 848;x__Actinomyces sp. oral taxon 848 str. F0332


ncbi_country: Australia

ncbi_isolation_source: sewage from residential aged care facility

ncbi_organism_name: Stenotrophomonas sp. Sm3119

ncbi_submitter: Medical Research Future Fund


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Enorma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Sulfuritortus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus sp. UMB1061

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: sludge from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Rhodocyclaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Belgium

ncbi_isolation_source: field experiment

ncbi_organism_name: Curtobacterium flaccumfaciens pv. betae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. UBA6860

ncbi_submitter: University of Queensland


ncbi_country: USA: TX

ncbi_isolation_source: environmental non-food-contact surface


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Salinibacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Sil RS 18

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Acholeplasmatales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Hungary: Debrecen

ncbi_isolation_source: Bird

ncbi_organism_name: Escherichia coli

ncbi_submitter: Debreceni Egyetem


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Inselspital


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Saudi Arabia

ncbi_isolation_source: Plant roots

ncbi_organism_name: Pseudomonas shirazica

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sphaerochaeta associata

ncbi_submitter: University of Iowa


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Salinimicrobium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Desulfobacterales bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Vienna


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Japan: Sendai

ncbi_isolation_source: Healthy adult feces

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: CERELA-CONICET


ncbi_country: China: Xinjiang

ncbi_isolation_source: oil pollution water

ncbi_organism_name: Frigidibacter oleivorans

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Russia: Tomsk region

ncbi_isolation_source: hot water

ncbi_organism_name: Zoogloeaceae bacteirum Par-f-2

ncbi_submitter: Immanuel Kant Baltic Federal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnoclostridium sp. UBA7215

ncbi_submitter: University of Queensland


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Xinjiang Uygur Autonomous Region

ncbi_organism_name: Bartonella sp. ML70XJBT

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus schleiferi


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora vitiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tetragenococcus halophilus subsp. halophilus

ncbi_strain_identifiers: NISL 7125

ncbi_submitter: Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture


ncbi_organism_name: Thiopseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: Freshwater

ncbi_organism_name: Nocardiopsis dassonvillei subsp. crassaminis

ncbi_submitter: Centre for Industrial Biotechnology Studies


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Netherlands

ncbi_isolation_source: Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: Texas Panhandle

ncbi_submitter: Texas Tech University


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Zhangzhou

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Lederbergia citrea

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Pacific Ocean: the Okinawa trough

ncbi_isolation_source: Abyssal sediment

ncbi_organism_name: Puniceibacterium sp. HSS470

ncbi_submitter: Ocean University of China


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: environment


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: Salmonella enterica CVM N51254 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Lincoln; Arkansas

ncbi_isolation_source: proximal right tibia

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: Streptomyces sp. NPDC051771

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Serratia plymuthica

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: wastewater from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA4176

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4176


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: SPRUCE 319

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 319

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: BGI-Shenzhen


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Israel: Ramat HaNadiv

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Weizmann Institute


ncbi_country: USA

ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- G1coas_bin-1586

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella bongori

ncbi_submitter: CDC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Fujian province

ncbi_isolation_source: tomato vessel

ncbi_organism_name: Ralstonia solanacearum FJAT-1458

ncbi_submitter: Fujian Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum FJAT-1458


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Marche;Macerata; Castefidardo

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M085S1

ncbi_submitter: Universite de Montreal


ncbi_country: Malaysia

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Monash University Malaysia


ncbi_assembly_name: Escherichia coli CVM N34562PS v. 1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N34562PS

ncbi_submitter: FDA


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Wisconsin, Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Potlatch State Park

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Desmospora profundinema

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2622736537 annotated assembly

ncbi_organism_name: Micromonospora saelicesensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodopseudomonas sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Kibdelosporangium aridum subsp. largum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Cocleimonas sp.


ncbi_organism_name: Cobetia marina


ncbi_organism_name: Candidatus Saccharimonas sp.

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__unclassified Candidatus Saccharimonas;s__Candidatus Saccharimonas sp.


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: uncultured Thiotrichaceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oceanobacillus longus


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Actinobacteria bacterium 21-73-9

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium 21-73-9


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_strain_identifiers: UCICRE 14

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA: AZ

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Eliava IBMV


ncbi_assembly_name: freshwater MAG --- Ja_bin-4299

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_organism_name: Vulcanimicrobiaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Estonia

ncbi_isolation_source: surfacewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Candidatus Microgenomatus auricola

ncbi_submitter: University of Trento

ncbi_taxonomy: d__Bacteria;p__Candidatus Microgenomatota;c__;o__;f__;g__Candidatus Microgenomatus;s__Candidatus Microgenomatus auricola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;g__Candidatus Microgenomatus;s__Candidatus Microgenomatus auricola


ncbi_isolation_source: sediment

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Queensland


ncbi_submitter: Danisco USA Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis DSM 10140


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Termitinemataceae bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides caecigallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Novosphingobium sp. Chol11

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0807

ncbi_submitter: Broad Institute


ncbi_country: USA: Washington

ncbi_isolation_source: Enviornmental

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID8360

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Nanning City; Guangxi Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_strain_identifiers: IPCE

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CRC RESIST


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter salomonis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Psychrobacillus sp. FSL K6-4615

ncbi_submitter: Penn State


ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonas sp. LG1D9

ncbi_submitter: Bowling Green State University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: fetus

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_country: Ireland: Wexford

ncbi_isolation_source: soil samples from lysimeters set up in Teagasc; ENVO:00002141

ncbi_submitter: National University or Ireland, Galway


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: Chryseobacterium arthrosphaerae


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Shanxi Province

ncbi_organism_name: Wenzhouxiangella sp. XN24

ncbi_submitter: shandong university


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Slurry

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: China: Yangjiang

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Vienna

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Chloroflexus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Michigan

ncbi_isolation_source: School hot water tap

ncbi_organism_name: Legionella taurinensis

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: Factory - Bale store

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_isolation_source: Sea sediments

ncbi_organism_name: Streptomyces tendae

ncbi_strain_identifiers: VITAKN

ncbi_submitter: Centre ALGATECH


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6573


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Treponema sp. UBA4313


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: Loyola University Chicago


ncbi_country: Brazil

ncbi_isolation_source: soil sample

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Embrapa


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 176

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella sp. 741265094_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: Rothia sp. P7181

ncbi_submitter: Masaryk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. P7181


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. NW1246

ncbi_submitter: Sichuan University


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Quadram Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_organism_name: Streptococcus australis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Enterobacter sp. E12

ncbi_submitter: Max Rubner-Institut


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodothermota bacterium

ncbi_submitter: University of Ottawa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;x__unclassified Rhodothermota;s__Rhodothermota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Archangium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Fusobacterium watanabei

ncbi_strain_identifiers: PAGU 1799

ncbi_submitter: MD Anderson Cancer Center


ncbi_assembly_name: Phosphate degrading bacteria

ncbi_organism_name: Olivibacter sp. EAT-5

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001671


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_country: United Kingdom: Lincoln

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 33591_Arg5

ncbi_submitter: University of Lincoln


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_country: Austria

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: AGES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Alphaproteobacteria bacterium UBA685

ncbi_submitter: University of Queensland


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-0282

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium UBA5518


ncbi_strain_identifiers: NCPPB 1326

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas vasicola;x__Xanthomonas vasicola pv. vasculorum;x__Xanthomonas vasicola pv. vasculorum NCPPB 1326


ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Lund University


ncbi_organism_name: Ornithinicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: University of New Brunswick


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of California, Berkeley


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_organism_name: Hyphomicrobium sp.


ncbi_isolation_source: anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV266

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: wound

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_country: Uganda

ncbi_isolation_source: soil

ncbi_organism_name: Subtercola sp. PAMC28395

ncbi_submitter: Korea University


ncbi_assembly_name: SOAPdenovo for version 1.05 of Pseudomonas monteilii genome

ncbi_country: Indian Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Pseudomonas monteilii


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K4-74

ncbi_submitter: Institute of Marine research


gtdb_type_species_of_genus: t

ncbi_organism_name: Chitinivorax tropicus


ncbi_isolation_source: nasopharynx


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Medical University


ncbi_country: South Korea: Daemo Mountain

ncbi_organism_name: Flavobacterium daemonense


ncbi_organism_name: Shimia sp.

ncbi_submitter: University of Southern California


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Sao Paulo State

ncbi_isolation_source: Feces samples from horses admitted in a veterinary hospital

ncbi_submitter: UNESP - School of Veterinary Medicine and Animal Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loc090116-9m_bin-0090

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Birmingham City University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: IL; Urbana

ncbi_organism_name: Streptomyces sp. AS58

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: France: Brittany

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Anses


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: ME

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Cepheid


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-659

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_organism_name: Ravibacter arvi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mali

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 97020

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Microbacterium sp. 1P06AB

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-1383

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. zbq_3

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Siksha 'O' Anusandhan (Deemed to be University), Bhubaneswar, Odisha


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0518

ncbi_submitter: Broad Institute


ncbi_organism_name: Shouchella miscanthi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Netherlands: Wageningen

ncbi_isolation_source: sludge

ncbi_organism_name: Pelotomaculum schinkii

ncbi_strain_identifiers: HH

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Myxococcales bacterium LLY-WYZ-16_1

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA1956

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Hawaii

ncbi_organism_name: Streptomyces sp. SID11726

ncbi_submitter: University of Wisconsin Madiso


ncbi_country: Ireland: Kinsale

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter seifertii

ncbi_strain_identifiers: FDAARGOS 1400

ncbi_submitter: US Food and Drug Administration


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Demequinaceae bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Mitsuokella jalaludinii


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_assembly_name: freshwater MAG --- A14_bin-1242

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Kineosporia mesophila

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Falkowbacteria bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: human gut

ncbi_organism_name: Helicobacter canadensis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Nose throat swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Colwellia sp.


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli O111:H11 str. CVM9534

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H11;x__Escherichia coli O111:H11 str. CVM9534


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: Bc Uniclon 02

ncbi_submitter: UFMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Colwellia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_country: Austria: Creek Felberbach near City of Salzburg

ncbi_isolation_source: creek; freshwater

ncbi_organism_name: Polynucleobacter sp. 31A-FELB

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Limnobacter sp. UBA1615

ncbi_submitter: University of Queensland


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Monschaui


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Spain: Madrid

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario La Paz


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K4-180

ncbi_submitter: Institute of Marine research


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_submitter: EBI


ncbi_organism_name: Allofournierella massiliensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Sporosarcina luteola

ncbi_strain_identifiers: MER 9

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFOXYB2_FULL_32_7


ncbi_country: Lebanon

ncbi_isolation_source: irrigation water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Dialister sp. UBA7295

ncbi_submitter: University of Queensland


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Baylor College of Medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Panjin

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobium sp. D-2

ncbi_submitter: dalian university of technology


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Succinatimonas sp.


ncbi_country: Australia: Northern Territory


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: New South Wales

ncbi_isolation_source: placenta

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_isolation_source: Hospital Arquitecto Marcide (Ferrol)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces microflavus


ncbi_country: Russia: Siberia; Altai

ncbi_isolation_source: Surface sediments

ncbi_organism_name: Thiohalorhabdus denitrificans

ncbi_strain_identifiers: HL 19

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Trueperella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Belgium

ncbi_isolation_source: Hybrid assembly G100 COL20160015

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sciensano


ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC101490

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Iamiaceae bacterium


ncbi_organism_name: uncultured Gallionella sp.


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. N21

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Eikenella halliae

ncbi_submitter: EMG


ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin8

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: LAG bin8

ncbi_submitter: Monash University


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_organism_name: Ignavibacteria bacterium GWB2_36_8

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium GWB2_36_8


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: marine

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_strain_identifiers: SOPE

ncbi_submitter: University of Utah, Department of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;s__Candidatus Sodalis pierantonii;x__Candidatus Sodalis pierantonii str. SOPE


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 36

ncbi_submitter: Chung-Ang University


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Streptococcus ferus


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: China: Zhanjiang

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Isoptericola sp. b408

ncbi_strain_identifiers: SYSU T00b408

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Institute of Plant Protection and Microbiology


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of Vienna


ncbi_country: China: Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Roseomonas sp. HF4

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Aequorivita sp.

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_organism_name: Vibrio anguillarum M3

ncbi_submitter: YSFRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio anguillarum;x__Vibrio anguillarum serovar O1;x__Vibrio anguillarum M3


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: paddy soil

ncbi_organism_name: Anaeromyxobacter sp. SG64

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_assembly_name: Rumen uncultured genome RUG11929

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Microbacterium arabinogalactanolyticum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinovum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Texas

ncbi_isolation_source: plerual fluid

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Enhydrobacter aerosaccus

ncbi_submitter: Tianjin University


ncbi_country: France: Marseille

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseillee


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AM37-9

ncbi_submitter: BGI


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium