ncbi_organism_name: Niabella sp.

ncbi_submitter: Joint Microbiome Facility


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces sp. NPDC058619

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Ectopseudomonas chengduensis


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: YDDB

ncbi_submitter: Sir Run Run Shaw Hospital, Collage of Medicine, Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_isolate: metabat2_coassembly_bwa.880 MAG

ncbi_organism_name: Coriobacteriia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.880 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 321

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 5594

ncbi_submitter: University of Calgary


ncbi_isolation_source: metagenome

ncbi_organism_name: Nostoc sp. UBA8866

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinoplanes sp. NPDC051346

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Guelph

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Russia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_organism_name: Shewanella algae

ncbi_submitter: University of Cadiz


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Oxford


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-4201

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Sake

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Department of Food and Life Sciences, Toyo University


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Reunion

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Nocardioides sp. URHA0020

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_44_12b


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Deep Bay

ncbi_isolation_source: surface sediment

ncbi_organism_name: Ruegeria pomeroyi

ncbi_submitter: Microbial Evolution and Ecology Laboratory,Shenzhen Research Institute


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: King City; ON

ncbi_isolation_source: soil at Joker s Hill

ncbi_submitter: Bard College


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Kenya: Kisii

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: USAMRD-A


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_strain_identifiers: NRRL WC-3542

ncbi_submitter: University of Illinois


ncbi_organism_name: Proteus sp. G2609

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2609


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Chongqing

ncbi_isolation_source: joint fluid

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Third Military Medical University


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y247

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany: Cologne

ncbi_organism_name: Nocardioides sp. Soil797

ncbi_submitter: ETH Zurich


ncbi_country: Germany: Titisee (Black Forest)

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. AP-Titi-500A-B4

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetales bacterium ZRK34

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Penglai

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas agarivorans

ncbi_submitter: Qilu University of Technology, Shandong Academy of Sciences


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_assembly_name: Rumen uncultured genome RUG14706

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: CA

ncbi_organism_name: Escherichia coli O157:H7 str. EC4205

ncbi_submitter: National Bioforensic Analysis Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EC4205


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Glaciecola sp.

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: urethral secretions

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE86

ncbi_submitter: Broad Institute


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Japan

ncbi_organism_name: Psychromonas ossibalaenae ATCC BAA-1528

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: JAMM 0738

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Tift Co. GA

ncbi_isolation_source: peanut blossom

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptomyces sp. NPDC005389

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Marseille

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: IHU Mediteranee Infection


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Povalibacter sp.

ncbi_submitter: University of California Berkeley


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China

ncbi_organism_name: Cellulosimicrobium sp. SH8

ncbi_submitter: Lanzhou University


ncbi_organism_name: Miltoncostaeaceae bacterium


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: marine

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: Tsinghua University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Pseudoduganella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Salmonella sp. SAL04213

ncbi_submitter: Zhejiang university


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Peru:Ascope; Chicama; La Libertad; AA.HH.

ncbi_organism_name: Yersinia pestis PY-48

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Queensland


ncbi_organism_name: Holophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Estonia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Cyanobacteria bacterium P01_G01_bin.38

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_G01_bin.38


ncbi_country: Nigeria

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Cepheid


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_assembly_name: Rumen uncultured genome RUG11720

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_assembly_name: freshwater MAG --- E-2_bin-196

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: Japan

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_assembly_name: IMG-taxon 2623620474 annotated assembly

ncbi_organism_name: Prevotellaceae bacterium MN60

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: drainage

ncbi_organism_name: Staphylococcus aureus M1201

ncbi_submitter: Broad Institute


ncbi_country: USA: GA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: rectal swab

ncbi_submitter: UMCG


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_country: Serbia: Arandelovac

ncbi_isolation_source: white clover rhizosphere

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_organism_name: Holophaga sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: uncultured Propionibacterium sp.


ncbi_country: India

ncbi_isolation_source: Nosocomial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Deefgea sp.


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Peptostreptococcus porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


gtdb_type_species_of_genus: t

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pluralibacter;s__Pluralibacter gergoviae;x__Pluralibacter gergoviae ATCC 33028 = NBRC 105706


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Joint

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Georgia

ncbi_isolation_source: Xylem

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolate: host faecal sample

ncbi_strain_identifiers: 02;host faecal sample;YE149

ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;x__Yersinia enterocolitica (type O:5,27);x__Yersinia enterocolitica (type O:5,27) str. YE149/02


ncbi_organism_name: Moritella viscosa

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_organism_name: Photorhabdus luminescens

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG10119

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Austria: Vienna

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KpPB

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: EMG


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC059242

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Micromonospora chersina


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Pseudomonas sp. NPDC098747


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Tannerella forsythia

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CENTRO DE INVESTIGACIONES EN BIOQUIMICA CLINICA E INMUNOLOGIA (CIBICI), CONICET, CORDOBA, ARGENTINA


ncbi_organism_name: uncultured Alteromonas sp.


ncbi_organism_name: Pirellulaceae bacterium


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_isolation_source: Rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Thauera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: SCPM-O-B-15018 (k9 Chol)

ncbi_submitter: SRCAMB


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: Oregon State University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_organism_name: Cyanobacteria bacterium J06607_10

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06607_10


ncbi_organism_name: Actinomyces oris K20

ncbi_submitter: Osaka Dental University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hotspring water

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Delhi


ncbi_isolation_source: sluge

ncbi_organism_name: Shinella zoogloeoides

ncbi_submitter: Anhui Academy of Agricultural Sciences


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vagococcus carniphilus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- VK4_bin-0923

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Fredinandcohnia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: termite gut

ncbi_organism_name: Ruminococcus sp. UBA946

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: Escherichia coli

ncbi_submitter: university of tokyo


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: China: Sichuan

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_submitter: Washington University in St. Louis


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_country: Thailand: Yasothon

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Weltevreden

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Liandao; Jiangsu

ncbi_isolation_source: marine sediment

ncbi_organism_name: Erythrobacter aureus

ncbi_submitter: Institude of Soil Science, Chinese of Academy of Sciences


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab female ferret; 4 months old

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Colorado State University


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 202

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudescherichia vulneris

ncbi_submitter: Henan Provincial People's Hospital


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Variovorax sp. Root411

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: WTSI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: EMG


ncbi_country: South Africa:Durban

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Algeria

ncbi_isolation_source: ready-to-eat foods

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universidade Federal do Parana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_submitter: JCVI


ncbi_isolation_source: Georgia; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Mexico: Reynosa

ncbi_isolation_source: soil

ncbi_organism_name: Bdellovibrio sp. 22V

ncbi_submitter: CBG Instituto Politecnico Nacional


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Faecalimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Gansu

ncbi_isolation_source: Rice flour product

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: USA: MD

ncbi_isolation_source: Brain tissue

ncbi_organism_name: Psychrobacter sp. FDAARGOS_221

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Clostridium sp.


ncbi_country: Russia: Severnaya Zemlya; Krasnoyarsk region

ncbi_isolation_source: bottom sediments

ncbi_organism_name: Rhodococcus sp. IEGM 1409

ncbi_strain_identifiers: IEGM 1409

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1409


ncbi_organism_name: Azorhizobium caulinodans

ncbi_submitter: Instituto de Salud Carlos III


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdimorpha stercoravium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Merdimorpha;s__Candidatus Merdimorpha stercoravium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: DSMZ

ncbi_organism_name: Streptomyces calvus

ncbi_submitter: Freiburg University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Ectothiorhodospira shaposhnikovii

ncbi_strain_identifiers: DSM 243

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Allomuricauda sp. MMSF_3332

ncbi_submitter: The University of Melbourne


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Acrocarpospora sp. B8E8

ncbi_submitter: Ondokuz Mayis university


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Rhodanobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Bielefeld University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Christensenellales bacterium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Hangzhou Wahaha Group Co., LTD.


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CAU


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1288

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__environmental samples;s__uncultured Candidatus Neoarthromitus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Goat raw milk Rocamadour

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Brigham Young University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus swab

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: freshwater MAG --- Umea_bin-08481

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Germany: Heidelberg

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_country: USA: Hawaii

ncbi_isolation_source: rumen

ncbi_organism_name: Synergistes jonesii

ncbi_submitter: CSIRO


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Shigella flexneri

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Neisseriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: New Hampshire

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Christensenella sp. UBA1385

ncbi_submitter: University of Queensland


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: China

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Tsinghua Shenzhen International Graduate School


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Germany

ncbi_isolation_source: Oropharynges of laboratory-kept Mongolian jirds

ncbi_organism_name: Streptococcus merionis DSM 19192

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_country: China: Lanzhou

ncbi_isolation_source: refinery wastewater

ncbi_organism_name: Delftia lacustris

ncbi_strain_identifiers: LZ-C

ncbi_submitter: Lanzhou University


ncbi_country: USA: Florida

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA4144

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA4144


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Baildon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Butyricimonas faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__unclassified Zetaproteobacteria;s__Zetaproteobacteria bacterium CG1_02_53_45


ncbi_organism_name: uncultured Parvibaculum sp.

ncbi_submitter: EMG


ncbi_isolation_source: nodule

ncbi_organism_name: Neorhizobium huautlense

ncbi_submitter: Centre for Plant Biotechnology and Genomics UPM-INIA


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Nanjing University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Aeromonas media

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_submitter: University of Alberta


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Department of Microbiology, Juntendo University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_country: Iran: East Azerbaijan Province; Maragheh-Hashtrood road

ncbi_isolation_source: wheat rhizosphere

ncbi_organism_name: Pseudomonas orientalis

ncbi_submitter: Universite de Moncton


ncbi_organism_name: Yersinia pestis

ncbi_submitter: RARI


ncbi_country: Germany: Freising

ncbi_isolation_source: water kefir

ncbi_organism_name: Gluconobacter albidus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: clinical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_isolation_source: Tracheal aspiration

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Peking University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rhodanobacter sp. Root179

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland

ncbi_isolation_source: Ear Swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Enterobacter sp. BNK-22

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Noosa River

ncbi_organism_name: Acidobacteria bacterium UBA6911

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA6911


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut tissue

ncbi_organism_name: Gilliamella sp. ESL0250

ncbi_submitter: University of Lausanne


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_country: Denmark

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Colombia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jiangxi Province Center for Disease Control and Prevention


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Singapore

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Nanyang Technological University


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_genome_representation: partial

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: NIH


ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Microcoleus sp. S36b_A2

ncbi_submitter: Palacky University Olomouc


ncbi_country: Brazil: Minas Gerais state

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: USA: IA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- A14_bin-1274

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Planococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 182

ncbi_submitter: Ghent University


ncbi_country: Thailand: Chaiyaphum Province

ncbi_isolation_source: Tree bark

ncbi_organism_name: Paractinoplanes pyxinae

ncbi_submitter: Chulalongkorn university


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_country: France: Normandy

ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Jiangsu; Wuxi

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Jiangnan University


ncbi_country: China

ncbi_isolation_source: surface seawater

ncbi_organism_name: Oleiagrimonas sp. MCCC 1A03011

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinisphaerales bacterium

ncbi_submitter: EMG


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Wolbachia endosymbiont of Rhagoletis indifferens

ncbi_submitter: University of Notre Dame


ncbi_organism_name: Mesoflavibacter profundi

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Allobaculum sp.


ncbi_country: Indian Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Thalassospira profundimaris WP0211


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: Veterinary Research Institute


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3021

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Portugal: Porto

ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Houston; Texas

ncbi_isolation_source: blood

ncbi_submitter: UTHealth Center for Antimicrobial Resistance and Microbial Genomics


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Dactylosporangium sp. NPDC006015

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_country: Brazil: Southeast

ncbi_isolation_source: bovine mastitis

ncbi_submitter: University of Campinas


ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Marinifilum fragile

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leptospiraceae bacterium UBA1091

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: trachel

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: Michigan State University


ncbi_organism_name: Anaeroglobus geminatus

ncbi_submitter: EMG


ncbi_isolate: CBJPGBEN

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: CBJPGBEN

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: USA: Oregon; Newport

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Halieaceae bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Unknown

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Longimicrobiales bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Salmonella sp. NW508

ncbi_submitter: Sichuan University


ncbi_organism_name: Arthrobacter sp. 1P04AC-2

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Candidatus Alistipes pullistercoris

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Nocardia sp. NPDC049220

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Dorea sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_submitter: RCPCM


ncbi_isolation_source: Drainage from GT site

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mycoplasmopsis glycophila ATCC 35277

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: blueberry

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: USDA


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolate: metabat2_coassembly_bwa.753 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.753 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Streptococcus agalactiae GB00535

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC047974

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum induced

ncbi_organism_name: Neisseria sp. HMSC075C10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Netherlands

ncbi_organism_name: Haemophilus influenzae


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: not provided

ncbi_organism_name: Schaalia turicensis

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides marinus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: urine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: decomposition metagenome

ncbi_organism_name: Candidatus Ochrobactrum gambitense

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Nocardioidaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: SPSIL

ncbi_isolation_source: forest soil

ncbi_organism_name: Sporomusa silvacetica DSM 10669

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangzhou

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: stool


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: coastal mangrove wetland rhizosphere sample

ncbi_organism_name: Rhodobacterales bacterium HKCCE4037

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Hunan

ncbi_isolation_source: telephone of Nurse station

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Pelobacter sp. UBA5610

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0568

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA

ncbi_organism_name: Moraxella nonliquefaciens

ncbi_strain_identifiers: ACRPA

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_strain_identifiers: APCR 84

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter sp. GD03645

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Maribacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Freising

ncbi_isolation_source: MAP pork

ncbi_organism_name: Pseudolactococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: France

ncbi_isolation_source: Tracheal aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean

ncbi_isolation_source: 300 m depth seawater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli BIDMC 20B

ncbi_strain_identifiers: BIDMC 20B

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Armenia: Lariyskaya region

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Texas

ncbi_organism_name: Garciella nitratireducens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Portugal: Serra da Estrela; Barragem do Covao do Curral

ncbi_isolation_source: non-axenic culture deposited to culture collection

ncbi_organism_name: Chlorogloea purpurea SAG 13.99

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: mucus

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_isolate: COMNV

ncbi_organism_name: Commensalibacter sp. Nvir

ncbi_strain_identifiers: COMNV

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Leicester


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 50:g,z51:-


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Zhejiang university


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Micromonospora sp. CA-248260

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Zymo Research Corporation


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Muribaculaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Tardiphaga sp. 172_B4_N1_3

ncbi_submitter: VIB


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-94

ncbi_isolation_source: activated sludge

ncbi_strain_identifiers: SZAS LIN-94

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 2 days after second rain event (91mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8419

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Oerskovia jenensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Pus; osteomyelitis

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: KCOM 1315

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: Australia: Adelaide

ncbi_isolation_source: blood

ncbi_submitter: SAHMRI


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: United Kingdom:Wales

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Mesorhizobium sp. M0809

ncbi_submitter: Washington State University


ncbi_assembly_name: Myxococcus xanthus DZF1

ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus xanthus DZF1

ncbi_submitter: University of Iowa


ncbi_organism_name: Persephonella marina EX-H1

ncbi_submitter: TIGR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: ML

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Spain

ncbi_isolation_source: Trachea of apparently healthy wild nestling black storks (Ciconia nigra)

ncbi_organism_name: Corynebacterium ciconiae DSM 44920

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: BLOOD


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: India

ncbi_organism_name: Pseudomonas parafulva

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0123

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium