ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_genome_representation: full

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Najit Technologies, Inc.


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: EMG


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


gtdb_representative: t

ncbi_organism_name: Nonomuraea sp. NPDC050643

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli PA35

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157;x__Escherichia coli PA35


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_assembly_level: Chromosome

ncbi_country: Brazil: Mari-Mari Island; Solimoes River; Amazon

ncbi_isolation_source: Wet sediments

ncbi_organism_name: Nostoc piscinale CENA21

ncbi_refseq_category: reference genome

ncbi_submitter: UCSD


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium skierniewicense

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Pseudomonas cerasi

ncbi_submitter: JLU


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 0-3 cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Beijing

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia

ncbi_isolation_source: egg farm cage shed

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Liverpool


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Hong Kong

ncbi_isolation_source: environmental swab (scale for baby)

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Micromonospora sp. NPDC047812


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Alabama

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: USDA, ARS, AAHRU


ncbi_country: Sweden

ncbi_isolation_source: Guttural pouch lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Tuebingen University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterobacter sp. BNK-16

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_submitter: University of California Berkeley


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. NPDC021212

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Limnobaculum xujianqingii

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-0249

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guangdong

ncbi_isolation_source: farm worker

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG14642

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: Arm

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Naval Medical Research Center


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain

ncbi_isolation_source: pork industry

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ISCIII


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mycobacterium persicum

ncbi_submitter: CHUV-UNIL


ncbi_country: Kenya: Kilifi

ncbi_isolation_source: urinary tract

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolate: metabat2_coassembly_bwa.860 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.860 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: King's College London


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Galway


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Changsha

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: endosphere environment

ncbi_organism_name: Flavobacterium anhuiense

ncbi_submitter: NIOO KNAW


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: infant feces

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Centre de Biotechnologie de Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halomonas socia

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil

ncbi_isolation_source: chicken

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kunzendorf


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca 5

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC057115

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_assembly_name: IMG-taxon 2596583557 annotated assembly

ncbi_organism_name: Pseudomonas flexibilis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- VK_bin-2388

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1355

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG12691

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Sichuan

ncbi_isolation_source: disinfected tableware

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Actinoplanes sp. NPDC023936


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Palmer LTER


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae STIR-CD-29

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Wendeng

ncbi_isolation_source: marine saltern sediment

ncbi_organism_name: Lentibacillus sediminis

ncbi_submitter: Shandong University at Weihai

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Pigmentiphaga sp. YJ18

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Region Zealand


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Busan

ncbi_isolation_source: seawater of recirculating aquaculture system biofilter

ncbi_organism_name: Rasiella rasia

ncbi_submitter: Pukyong National University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Italy

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_organism_name: Pediococcus parvulus

ncbi_submitter: Universite de Caen Normandie


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: USA: MS

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR3609

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWB1_39_10


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: seedlings

ncbi_organism_name: Pseudomonas extremaustralis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Nocardia callitridis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: India: Kolkata

ncbi_strain_identifiers: MDCL 3

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolate: Vpy1 symbiont

ncbi_isolation_source: Vangueria pygmaea leaf

ncbi_organism_name: uncultured Paraburkholderia sp.

ncbi_strain_identifiers: Vpy1 symbiont

ncbi_submitter: inrae toulouse


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_strain_identifiers: Wailmer

ncbi_submitter: National Chung Cheng University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Gluconobacter frateurii M-2

ncbi_submitter: Kinki University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Hospital Affiliated to Jiamusi University


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Orebro University


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Caedimonas varicaedens

ncbi_submitter: Indiana University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nodosilinea sp.


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: Wolbachia sp.

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Methylotenera sp.


ncbi_organism_name: uncultured Paludibacteraceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D8_bin-597

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: IMG-taxon 2675903018 annotated assembly

ncbi_organism_name: Salipaludibacillus aurantiacus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacillus cereus VD014

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD014


ncbi_organism_name: Kiritimatiellia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Mycetocola sp. 2940

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Melbourne

ncbi_organism_name: Serratia nevei


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Soil

ncbi_organism_name: Massilia sp. Bi118

ncbi_submitter: University of Dundee


ncbi_organism_name: Segetibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Yale University


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Planctomycetes bacterium GWF2_41_51

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium GWF2_41_51


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Australia

ncbi_submitter: University of New South Wales


ncbi_country: Pacific Ocean: North Fiji Basin

ncbi_organism_name: Guyparkeria hydrothermalis

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Stenotrophomonas sp. TWI1151

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Arthrobacter ginkgonis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Lebanon

ncbi_isolation_source: deep tracheal aspirates

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Delftia sp. UGAL515B_04

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptococcus salivarius


ncbi_country: USA: Maryland ex Africa

ncbi_isolation_source: clinical

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Listeria monocytogenes SLCC2540

ncbi_submitter: ERA-NET / Spatelis


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Jiaxing

ncbi_isolation_source: urine

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_assembly_name: Rumen uncultured genome RUG12448

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland: St. Gallen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Laboratory Medicine


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: hydrothermal vent fluid

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: Uruguay

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: USA

ncbi_submitter: JCVI


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Mozambique

ncbi_isolation_source: feces


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Bim;x__Leptospira kirschneri serovar Bim str. PUO 1247


ncbi_country: China: Neijiang; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: burned soil

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1545

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium


ncbi_country: China: Gansu

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Blautia obeum A2-162

ncbi_submitter: MetaHIT


ncbi_country: Switzerland

ncbi_organism_name: Treponema phagedenis

ncbi_submitter: University of Bern


ncbi_country: Pacific Ocean

ncbi_isolation_source: Seawater from the North Pacific Ocean incubated within a mesocosm experiment with diatom exudates at 6 C for 6 days.

ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Bacillus sp.


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus sp. DIV0436a


ncbi_organism_name: Salmonella sp. SAL04291

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Raoultella sp. FYR_9

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Bacillus cereus group sp. BceL110

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL110


ncbi_organism_name: Streptomyces sp. NPDC057780

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIFESP


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Firmicutes bacterium CAG:65_45_313

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:65_45_313


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Staphylococcus aureus VET0286R

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Chonburi; Phanat Nikhom

ncbi_isolation_source: diseased buffalo with haemorrhagic septicaemia

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_strain_identifiers: THD

ncbi_submitter: Murdoch University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhengzhou

ncbi_isolation_source: urine

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Anhui

ncbi_isolation_source: Drainage fluid

ncbi_submitter: Anhui Medical University


ncbi_country: USA: Detroit

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_assembly_name: Rumen uncultured genome RUG14346

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Michigan


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Turkey: Mugla

ncbi_organism_name: Chryseobacterium muglaense

ncbi_submitter: Bursa Uludag University


ncbi_organism_name: Nocardia sp. NPDC050378

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Algeria: Ain Baida-Ouargla

ncbi_isolation_source: salt lake

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Alberta


ncbi_isolation_source: barn-yard manure

ncbi_organism_name: Streptomyces xylophagus

ncbi_submitter: University of Illinois


ncbi_country: Norway

ncbi_isolation_source: water

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: IMR


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_assembly_name: Acetobacter ghanensis

ncbi_organism_name: Acetobacter ghanensis

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae BSU248

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Mycolicibacterium nivoides

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: International Space Station

ncbi_isolation_source: Mineral Grit embedded in adhesive paper 3

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Korea Polar Research Institute


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Iceland: Laugarvik

ncbi_isolation_source: intertidal hot spring

ncbi_organism_name: Rhodocaloribacter litoris

ncbi_submitter: Matis ltd.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: AAFC


ncbi_organism_name: Saccharopolyspora taberi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterococcus avium

ncbi_submitter: the seqafrica consortium


ncbi_country: France: Besancon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_country: Australia: Lilydale Sewage Treatment Plant; Victoria

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: CSIRO


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacterium enshiense

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: Wound Discharge

ncbi_organism_name: Escherichia coli

ncbi_submitter: marathon study consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Changsha

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya hospital, Central South University


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Aridibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Caloramator sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Afghanistan

ncbi_isolation_source: respiratory

ncbi_submitter: The University of Sydney


ncbi_organism_name: Candidatus Midichloria mitochondrii

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_submitter: SC


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Nares

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Ulcer

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_assembly_name: Salmonella enterica CVM N46813 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: soil from chicken farm

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: India: Leh

ncbi_isolation_source: Indus River

ncbi_organism_name: Streptomyces sp. MNU77

ncbi_submitter: CSIR-IGIB, New Delhi


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Holdemania filiformis DSM 12042

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_submitter: University of Lethbridge


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Leicester


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa45

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB5_2B_268

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Streptomyces sp. NBC_00322


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Algoriphagus aquaeductus

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Paraperlucidibaca sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Microbacterium sp. NPDC087592

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Alistipes avistercoris


ncbi_organism_name: Shouchella rhizosphaerae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Rhodococcus erythropolis


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Bryobacterales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Devosia sp. XGJD_8

ncbi_submitter: Hannam University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: Canada

ncbi_isolation_source: horse feces

ncbi_organism_name: Aliarcobacter butzleri L353

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Roseitalea porphyridii

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_country: USA: Idaho

ncbi_isolation_source: Rainbow trout

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Delware Bay;Delaware

ncbi_isolation_source: estuary bay water

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Denmark: Slagelse

ncbi_submitter: Region Zealand


ncbi_submitter: Auburn University


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0412

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Roseburia inulinivorans DSM 16841

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2622736587 annotated assembly

ncbi_organism_name: Algoriphagus faecimaris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: abdomen of patient with peritoneal carcinomatosis

ncbi_organism_name: Lentzea albidocapillata

ncbi_submitter: University of Illinois


ncbi_organism_name: Sphaerobacter thermophilus

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: California

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae UCI 59

ncbi_strain_identifiers: UCI 59

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 59


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_country: Malaysia: Johor

ncbi_isolation_source: oxidation pond

ncbi_organism_name: Citrobacter sp. L17

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Psychrobacillus sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoferax sp. OV413

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Alberta

ncbi_isolation_source: Beef carcass post-hide removal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina sp. UBA1482

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Left guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Pooled cattle faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_strain_identifiers: EntfacYE

ncbi_submitter: Pathobiology, Tehran University of Medical Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Russia: Moscow

ncbi_isolation_source: bone

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal State Center N.F. Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: infant with diarrhea

ncbi_organism_name: Escherichia coli O55:H7 str. CB9615

ncbi_submitter: Nankai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O55:H7;x__Escherichia coli O55:H7 str. CB9615


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Madagascar

ncbi_isolate: Mycobacterium tuberculosis

ncbi_strain_identifiers: Lineage 4.1;Mycobacterium tuberculosis

ncbi_submitter: EMBL-EBI


ncbi_country: Reunion

ncbi_isolation_source: Phaseolus vulgaris cv Marla

ncbi_organism_name: Xanthomonas citri pv. fuscans CFBP 6988

ncbi_strain_identifiers: CFBP 6988

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans;x__Xanthomonas citri pv. fuscans CFBP 6988


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_submitter: University of Toronto


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopostipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Baildon


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: cholera patient stool sample

ncbi_organism_name: Vibrio cholerae O1 str. Inaba G4222

ncbi_strain_identifiers: Inaba G4222

ncbi_submitter: CSIR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. Inaba G4222


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Lake Taihu

ncbi_isolation_source: cyanobacterial aggregates

ncbi_organism_name: Rhodoferax sp. TH121

ncbi_submitter: Nanjing Institute of Geography and Limnology


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Brevundimonas sp. 2P05AB

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Paenibacillus sp. FA6

ncbi_submitter: US Army Corps of Engineeers


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Hydrogenedens sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__unclassified Candidatus Hydrogenedens;s__Candidatus Hydrogenedens sp.


ncbi_organism_name: Salmonella sp. SAL04190

ncbi_submitter: Zhejiang university


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Aeromonas veronii bv. sobria

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_country: China: Dabaoshan; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodothermaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Shewanella baltica

ncbi_strain_identifiers: CA

ncbi_submitter: MacLea Laboratory


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_submitter: Massachusetts Eye and Ear


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Portugal: North and Centre

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_country: Japan

ncbi_organism_name: Helicobacter heilmannii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: human skin

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: NIH/NHGRI


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Paenibacillus sp. FSL R7-0198

ncbi_submitter: Penn State


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-7

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Opitutaceae bacterium

ncbi_strain_identifiers: new MAG-7

ncbi_submitter: Micoorganism


ncbi_country: Pakistan: Faisalabad; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. F_16

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R2A5

ncbi_submitter: Arkin Lab


ncbi_submitter: Chinese Academey of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella glacialipiscicola

ncbi_submitter: AgResearch


ncbi_country: Canada: Alberta

ncbi_isolation_source: coal bed cutting

ncbi_organism_name: Bacteriovoracaceae bacterium UBA4097

ncbi_submitter: University of Queensland


ncbi_organism_name: Anaerotruncus sp. MC2020


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tsinghua University


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: SAHMRI


ncbi_organism_name: Klebsiella sp. 142732

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Hanover NH Dartmouth

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Huizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Cysteiniphilum marinum

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Candidatus Odyssella sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Holosporales;f__Candidatus Paracaedibacteraceae;g__Candidatus Odyssella;x__environmental samples;s__uncultured Candidatus Odyssella sp.


ncbi_isolation_source: blood culture of a hospitalized patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


ncbi_country: Estonia: Tartu

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Candidatus Udaeobacter sp.

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__environmental samples;s__uncultured Candidatus Udaeobacter sp.


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Fervidibacter sacchari

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Fervidibacterota;c__;o__;f__;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter sacchari

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter sacchari


ncbi_country: Italy: Modena

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: pig gut metagenome


ncbi_country: China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Russia: Amur Region

ncbi_isolation_source: Ready-to-cook chicken cutlets

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Comamonas sp. A7-5

ncbi_submitter: Faculty of Science, Chulalongkorn University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Houston

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: ANIWHA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12456

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Shimazuella soli

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_country: Nigeria

ncbi_isolation_source: wound

ncbi_submitter: Cepheid


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA7367

ncbi_submitter: University of Queensland


ncbi_organism_name: Syntrophothermaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Peribacter sp. UBA2144

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;x__unclassified Candidatus Peribacter;s__Candidatus Peribacter sp. UBA2144


ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7749


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: Thailand: Rayong

ncbi_isolation_source: Peat swamp forest

ncbi_organism_name: Streptomyces actinomycinicus

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Boot swab

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pediococcus acidilactici D3

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus;x__Pediococcus acidilactici group;s__Pediococcus acidilactici;x__Pediococcus acidilactici D3


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Laboratoire de Microbiologie. University hospital Sahloul


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Xinjiang Province

ncbi_isolation_source: lake water

ncbi_organism_name: Frigidibacter albus

ncbi_submitter: Guangdong Academy of Sciences


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bosea sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis TRS4

ncbi_submitter: Vanderbilt University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea: Sangju Province

ncbi_organism_name: Chitinimonas koreensis

ncbi_submitter: Shandong University


ncbi_organism_name: Desulfatiglandales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus salivarius


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Bacillus mobilis

ncbi_strain_identifiers: TIAC 2088

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Porticoccaceae bacterium


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Brucella anthropi

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterococcus sp. DIV1314a

ncbi_submitter: Broad Institute


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Gammaproteobacteria bacterium UBA3017


ncbi_organism_name: Roseovarius aquimarinus

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-244

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bryobacterales bacterium

ncbi_strain_identifiers: new MAG-244

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090721-4m_bin-1009

ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: University of Sheffield


ncbi_assembly_name: IMG-taxon 2667527407 annotated assembly

ncbi_organism_name: Cryobacterium luteum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli


ncbi_submitter: Sichuan University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Fish spleen

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Leptospira venezuelensis

ncbi_strain_identifiers: IVIC.BOV 4

ncbi_submitter: Venezuelan Scientific Research Institute


ncbi_organism_name: Pseudoalteromonas sp. BSi20311

ncbi_submitter: Shandong University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_country: Germany: Espelkam

ncbi_isolation_source: mineral oil-contaminated soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus cereus group sp. MG11

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MG11


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium Greene0416_19


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Salinibacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: excrement

ncbi_organism_name: Nocardioides marmotae

ncbi_submitter: China CDC


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: University of East Anglia


ncbi_country: Australia: QLD

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Hydrogenophilales bacterium 17-64-11


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium montefiorense

ncbi_submitter: Laboratory of Aquatic Medicine School of Veterinary Medicine, Nippon Veterinary and Life Science University


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: South Africa

ncbi_isolation_source: Root nodule

ncbi_organism_name: Paraburkholderia sprentiae WSM5005

ncbi_submitter: Murdoch University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_country: France: Institut Pasteur

ncbi_isolation_source: proximal colonic tissues

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Institut Pasteur de Paris


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_assembly_name: freshwater MAG --- Loclat_bin-10216

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 24

ncbi_submitter: USDA-ARS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_country: USA: PA

ncbi_isolation_source: intestine (Canis lupus familiaris)

ncbi_submitter: FDA/CFSAN


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus pasteurianus


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)


ncbi_assembly_name: Rumen uncultured genome RUG13518

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mycetocola saprophilus

ncbi_submitter: University of Illinois


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia sp. MOD1-EC6098


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Lithuania

ncbi_isolation_source: Fermented Cherry Tomato

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Vilnius University


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Antarctica: Western Antarctic Peninsula; King George Island.

ncbi_isolation_source: marine sponge

ncbi_organism_name: Sporosarcina sp. E16_3

ncbi_submitter: Universidad Mayor


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aneurinibacillus migulanus

ncbi_strain_identifiers: NCTC 7096

ncbi_submitter: University of Neuchatel


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Shandong University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1294

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: blood

ncbi_organism_name: Bordetella holmesii 44057

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: Finland

ncbi_isolation_source: saliva

ncbi_organism_name: Capnocytophaga genosp. AHN8471

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL060PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_assembly_name: freshwater MAG --- LJ-13-9m_bin-027

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium sp. CAG:568

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Sphingomonas sp. LHG3443-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_isolation_source: wound vulva

ncbi_organism_name: Staphylococcus sp. HMSC066G04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Hanover; NH

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Dartmouth College


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_isolation_source: mouse gut metagenome