ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides uniformis ATCC 8492

ncbi_strain_identifiers: ATCC 8492

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis;x__Bacteroides uniformis ATCC 8492


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_genome_representation: full

ncbi_isolation_source: Gut of Korean rockfish

ncbi_organism_name: Flavobacterium sp. N2469

ncbi_submitter: Jeju National University


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_level: Scaffold

ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Turkey: Persembe

ncbi_isolation_source: spleen

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


gtdb_representative: t

ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Cacconaster equi

ncbi_submitter: Quadram Institute

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__;g__Candidatus Cacconaster;s__Candidatus Cacconaster equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cacconaster;s__Candidatus Cacconaster equi

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: cloacal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Huanglongcave; Zhangjiajie

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CB09001

ncbi_submitter: Central South University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA

ncbi_isolation_source: Subject with localized aggressive periodontitis

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype f str. D18P1


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_isolation_source: gut

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_strain_identifiers: WHRI 6378

ncbi_submitter: University of Exeter


ncbi_assembly_name: Rumen uncultured genome RUG12566

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India

ncbi_isolation_source: Wastewater treatment plant Effluent

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: Cucumber fermentation tank

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Dialister sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: China: Wanglang

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B2772

ncbi_submitter: China Agricultural University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridium cochlearium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter ursingii


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: nasopharyngeal sample

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Mannheimia;s__Mannheimia haemolytica;x__Mannheimia haemolytica serotype 6;x__Mannheimia haemolytica serotype 6 str. H23


ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Stomatobaculum longum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Haiti

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Glaciihabitans sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Tissierella praeacuta

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Bacillus albus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Comenius University Science Park


ncbi_country: Brazil: Minas Gerais; Ouro Branco

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: China: Tangshan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_assembly_name: Brucella abortus 420

ncbi_country: Armenia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG14564

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Demequina sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ligilactobacillus animalis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Actinopolyspora saharensis

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolate: AOP18_B2_surf _bin _4

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: AOP18_B2_surf _bin _4

ncbi_submitter: Genoscope


ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: glasses

ncbi_organism_name: Pseudomonas cedrina subsp. fulgida

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas cedrina;sb__Pseudomonas cedrina subsp. fulgida


ncbi_isolation_source: Sediment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: University of Victoria


ncbi_isolation_source: ruminant gastrointestinal tract


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9042

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: France: Brittany

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Anses


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA6983

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6983


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China: Wenzhou

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Chryseotalea sp.

ncbi_submitter: University of Michigan


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Groin swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Gemella haemolysans

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Beijing

ncbi_isolation_source: activated sludge

ncbi_organism_name: Mesorhizobium sp. GR13

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MT

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli


ncbi_assembly_name: freshwater MAG --- Ja1_bin-0143

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_country: Canada: Alberta

ncbi_isolation_source: Oil sands tailings pond

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Chromosome

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of manitoba


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-0560

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Columbia River plume; salinty 25

ncbi_organism_name: Porticoccaceae bacterium UBA3433

ncbi_submitter: University of Queensland


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Demequina phytophila

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 41563


ncbi_country: Germany: Berlin

ncbi_organism_name: Bartonella henselae

ncbi_strain_identifiers: Berlin-I

ncbi_submitter: University Hospital, Goethe University Frankfurt am Main, Germany


ncbi_country: Antarctica

ncbi_isolation_source: Microbial mat

ncbi_organism_name: Clostridium frigoris

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: Serbia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


gtdb_type_species_of_genus: t

ncbi_country: Hungary: Budapest

ncbi_isolation_source: laboratory-scale wastewater purification system

ncbi_organism_name: Eoetvoesiella caeni

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_country: India

ncbi_isolation_source: hospital sewage

ncbi_submitter: Christian Medical College


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: IMG-taxon 2681813518 annotated assembly

ncbi_organism_name: Tropicimonas sediminicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Lacombe

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1413735

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Peptostreptococcus sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: India: Chandigarh

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Washington; Prosser; Irrigated Agricultural Research and Extension Center (IAREC)

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Pacific Northwest National Laboratory


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National University of Singapore (NUS)


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: South Africa

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: SAHMRI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Texas

ncbi_isolation_source: bovine feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: University of Turku


ncbi_country: Thailand

ncbi_isolation_source: microbial mat from rice patty soil

ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: Institute of Hydrobiology, Biology Centre CAS


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Aeromicrobium sp.


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: University of Oxford


ncbi_organism_name: Sinomonas sp. P47F7

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-1942

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Okibacterium sp. HSC-33S16

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Mahidol University


ncbi_country: China

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudoalteromonas sp. A601

ncbi_submitter: Shandong University


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CDC


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii 732

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Rhodococcoides fascians

ncbi_submitter: National Institute of Agronomy, Tunis, Carthage University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0300

ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: municipal sewage

ncbi_organism_name: Ligilactobacillus agilis DSM 20509

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_assembly_name: Rumen uncultured genome RUG10506

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA4181

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4181


ncbi_country: Argentina: Bienos Aires

ncbi_isolation_source: urine

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: EMG


ncbi_organism_name: Leuconostoc gelidum

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Xiaohegou

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B2865

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Australia: Five Islands Nature Reserve; NSW

ncbi_isolation_source: cloacal sample

ncbi_submitter: OUTBREAK


ncbi_country: India: Karnataka

ncbi_isolation_source: Cow Milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Gemella sanguinis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_2 WWTPs effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Germany

ncbi_isolation_source: Anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium rhinophilum

ncbi_submitter: Duke University


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: intestinal content

ncbi_organism_name: Treponema sp.

ncbi_submitter: ChinaCDC


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Alcanivorax sp. HI0033

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: plant

ncbi_organism_name: Paenibacillus sp. JZ16

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Cryptobacteroides faecavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides faecavium


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus mycoides;x__Bacillus mycoides NBRC 101238 = DSM 11821

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: compost

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_submitter: University of British Columbia


ncbi_organism_name: Corynebacterium sp. Marseille-P4611

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: USA

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 442

ncbi_submitter: Brigham Young University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: France

ncbi_isolation_source: fecal sample

ncbi_submitter: Anses


ncbi_organism_name: Carnobacterium sp. FSL E2-0243

ncbi_submitter: Penn State


ncbi_assembly_name: De Novo assembly

ncbi_isolation_source: oil-contaminated beach sediments

ncbi_organism_name: Alcanivorax sp. PN-3

ncbi_submitter: University of Illinois at Chicago


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: yogurt (Tarag)

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: USA: Astoria; Oregon

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. or43

ncbi_submitter: Cornell University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptomyces iakyrus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_submitter: University of Balamand


ncbi_country: Denmark

ncbi_isolation_source: blood culture

ncbi_organism_name: Sanguibacteroides justesenii

ncbi_submitter: Odense University Hospital


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium GW2011_GWB1_40_28


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Taiwan

ncbi_isolation_source: pork

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Kitasatospora sp. HPMI-4

ncbi_submitter: Gadjah Mada University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: South Korea: Taean

ncbi_isolation_source: estuarine water

ncbi_organism_name: Nitratireductor rhodophyticola

ncbi_submitter: Chung-Ang university


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_assembly_name: Rumen uncultured genome RUG13560

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Izimoplasma sp. HR1

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izimoplasma sp. HR1


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: abdominal abscess

ncbi_organism_name: Aggregatibacter kilianii

ncbi_submitter: Aarhus University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Limimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Ukraine: trench T22; Chernobyl exclusion zone

ncbi_isolation_source: radionuclide-contaminated soil

ncbi_organism_name: Microbacterium oleivorans

ncbi_submitter: CEA


ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: liver

ncbi_organism_name: Corynebacterium xerosis

ncbi_strain_identifiers: GS 1

ncbi_submitter: Gansu Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: USA: St. Paul; MN

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Treponema porcinum

ncbi_submitter: University of Minnesota


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: CCCM 152

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 152

ncbi_submitter: The University of Queensland


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Marivirga sericea

ncbi_submitter: Biology Centre CAS


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Tunturiibacter empetritectus

ncbi_submitter: Rutgers University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Salmonella sp. SC30

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- Loc081215-6m_bin-1037

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 16 (4-7649002)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 16 (4-7649002)


ncbi_assembly_name: freshwater MAG --- MJ-2014-D7_bin-393

ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: feces from a female

ncbi_organism_name: Escherichia coli TOP382-1

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_assembly_name: Rumen uncultured genome RUG716

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Komagataeibacter europaeus

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: South Korea

ncbi_organism_name: Collinsella acetigenes

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_isolation_source: human stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: Canada: Toronto

ncbi_isolation_source: Mennonite Sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: chicken feed developer pullet

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 640631


ncbi_country: South Korea: Wonju

ncbi_isolation_source: soil

ncbi_organism_name: Caenimonas soli

ncbi_submitter: Kyonggi University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Brittany

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Anses


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_assembly_name: Mycobacterium massilipolynesiensis

ncbi_organism_name: Mycobacterium sp. M26

ncbi_submitter: URMITE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8307

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Phormidesmidales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFOXYC2_FULL_39_8


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Solibacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__unclassified Candidatus Solibacter;s__Candidatus Solibacter sp.


ncbi_organism_name: Odoribacter laneus


ncbi_country: China: Chengdu

ncbi_organism_name: Anaerolineaceae bacterium UBA5358

ncbi_submitter: University of Queensland


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: laboratory

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Science College, Shantou University


ncbi_isolation_source: PES/PVP hollowfiber membrane used for tap-water filtration

ncbi_organism_name: Sphingomonas sp. S2M10

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: Brazil

ncbi_isolation_source: Coastal Water

ncbi_organism_name: Enterobacter sp. BT1131

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_isolation_source: pickle

ncbi_organism_name: Companilactobacillus baiquanensis

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2101

ncbi_submitter: Broad Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA7114


ncbi_country: Germany

ncbi_isolation_source: rhizosphere of Hypericum perforatum

ncbi_organism_name: Hypericibacter adhaerens

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: EMG


ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_country: Argentina

ncbi_isolation_source: root nodules

ncbi_organism_name: Mesorhizobium intechi

ncbi_submitter: Instituto de Biotecnologia y Biologia Molecular


ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium sp. GB-1

ncbi_submitter: FDA/CFSAN


ncbi_country: Ecuador

ncbi_isolation_source: imported seafood from Ecuador

ncbi_submitter: Health Canada


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC075F12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: catheter tip

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Hungatella sp.


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus sp. HMSC065C01


ncbi_country: USA: AL

ncbi_isolation_source: feces duck

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Oligella sp.


ncbi_organism_name: Candidatus Meridianibacter frigidus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flammeovirgaceae bacterium UBA976

ncbi_submitter: University of Queensland


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Portugal: Porto

ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium marquesiae

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan:Hokkaido; Memuro-cho; Kamibisei

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas sp. StFLB209

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: cdqaf

ncbi_country: Canada: Ontario; London

ncbi_isolation_source: 67 year old patient with severe CDAD in 2005

ncbi_organism_name: Clostridioides difficile QCD-37x79

ncbi_submitter: McGill University


ncbi_country: China: wuhan

ncbi_isolation_source: soil

ncbi_organism_name: Chroococcidiopsis sp. CCNUC1

ncbi_submitter: Central China Normal University


ncbi_organism_name: Streptomyces mexicanus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: SINTEF Industry


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: Jutongia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Georgia

ncbi_organism_name: Rouxiella badensis

ncbi_submitter: University of Georgia


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Czech Republic

ncbi_organism_name: Granulicella sp. S190

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_country: China: South China Sea

ncbi_isolation_source: surface sediments in deep sea

ncbi_organism_name: Billgrantia desiderata

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Spain: Asturias

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Denmark

ncbi_isolation_source: skin

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-227

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidetes bacterium UBA1947

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA1947


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ilumatobacter fluminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Zurich


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-125

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella parvirubra

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_organism_name: Phreatobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hubei

ncbi_isolation_source: brain and liver

ncbi_organism_name: Escherichia coli


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Cancer Institute - NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Shigella sp. FJ201103

ncbi_submitter: Fujian Medical University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Moritella viscosa

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Spain: Santander

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Aalborg University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H88185

ncbi_submitter: Broad Institute


ncbi_country: USA: NE/KS

ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli N36254PS

ncbi_submitter: FDA


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: Germany

ncbi_isolation_source: Food (aniseed)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 37.F.02


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lymph node

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: University Hospital of Besancon


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella africana

ncbi_submitter: Institut Pasteur


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Boiler

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Mobilicoccus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: South sea

ncbi_organism_name: Parasedimentitalea psychrophila

ncbi_submitter: Institute of Deep-sea Science and Engine


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Ecuador

ncbi_isolation_source: pulmonary

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: Egypt

ncbi_isolation_source: Chest tube

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JCVI


ncbi_country: Syria

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_24


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Institute of Zoology, CAS


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_51_15


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Helicobacter winghamensis

ncbi_strain_identifiers: ATCC BAA-435

ncbi_submitter: Public Health Agency of Canada


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2693429886 annotated assembly

ncbi_organism_name: Myxococcus fulvus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Beijing Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Pseudomonas aeruginosa BWH060

ncbi_submitter: Broad Institute


ncbi_country: Australia: Adelaide

ncbi_isolation_source: liver

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M169S2

ncbi_submitter: Universite de Montreal


ncbi_country: Netherlands

ncbi_isolation_source: water

ncbi_strain_identifiers: Waz Holland

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira vanthielii;x__Leptospira vanthielii serovar Holland;x__Leptospira vanthielii serovar Holland str. Waz Holland = ATCC 700522


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_submitter: University of Wyoming


ncbi_submitter: national health research institutes


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_isolate: SPRUCE 186

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_strain_identifiers: SPRUCE 186

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella sp. SAL03688

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Caecum


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: Gar RS 13

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium ERV161

ncbi_submitter: Washington University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Dankook University


ncbi_country: Turkey

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus group sp. N28

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N28


ncbi_country: Canada: Montreal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: B ZZa0

ncbi_submitter: McGill University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_genome_category: derived from single cell

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Research Institute for Systems Biology and Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Ames

ncbi_isolation_source: Eggshell

ncbi_organism_name: Turicibacter bilis

ncbi_submitter: USDA ARS


ncbi_country: Malaysia

ncbi_isolation_source: dental plaque

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Malaya


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: Switzerland

ncbi_isolation_source: fruit powder

ncbi_organism_name: Franconibacter pulveris 1160

ncbi_submitter: OARSA, CFSAN


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Megaera polyxenophila

ncbi_strain_identifiers: PCS

ncbi_submitter: Shizuoka University


ncbi_organism_name: Afifellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: horse trough water

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA

ncbi_isolation_source: Vaginal fluid

ncbi_organism_name: Ezakiella coagulans

ncbi_submitter: University of Maryland Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;s__Ezakiella coagulans


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Nepal: Ralpa-Ramdi

ncbi_isolation_source: Wild animal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacterales bacterium


ncbi_country: China: Shaoguan

ncbi_isolation_source: unified soil; enrichment culture of cellulolytic microbial consortium named F1RT

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Guilin Medical University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium poinsettiae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Polynucleobacter sp. UBA2650

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Michigan

ncbi_organism_name: Enterococcus faecalis EnGen0304

ncbi_submitter: Broad Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA012


ncbi_organism_name: Kingella kingae Vir5453

ncbi_submitter: ebi


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitratireductor sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Institute for Basic Science


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: JCVI


ncbi_country: China: Guangxi

ncbi_organism_name: Nocardia abscessus

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1273


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA4463


ncbi_country: Algeria

ncbi_isolation_source: milk

ncbi_organism_name: Lactococcus lactis subsp. lactis


ncbi_country: India: northern Himalayas

ncbi_isolation_source: soil from geothermal area

ncbi_organism_name: Thermus sp. NEB1569

ncbi_submitter: New England Biolabs


ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: natural water sources by community and farm

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces sp. S-9

ncbi_submitter: THE MAHARAJA SAYAJIRAO UNIVERSITY OF BARODA


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_country: USA: Illinois

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Enterococcus sp. 6D12_DIV0197


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Serratia marcescens MC620

ncbi_submitter: The Genome Institute


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0305260.15

ncbi_submitter: IGS


ncbi_assembly_name: Rumen uncultured genome RUG10234

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Buchananella felis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: Canada: Lacombe

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: environment

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: IMGAG (Universitaetsklinikum Tuebingen)


ncbi_organism_name: Fusobacterium nucleatum


ncbi_country: Lebanon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Micrococcus terreus

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Bolivia: South America; Santa Cruz

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: µFORGE


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0936

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: clinical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Italy

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: BZR 187

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad Cientifica del Sur


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP7_C1_surf _bin _2

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_strain_identifiers: AOP7_C1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bartonella apis

ncbi_submitter: Ghent University


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG520

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Czech Republic: University Hospital Brno

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: USA: Massachusetts

ncbi_organism_name: Psychromonas sp. 14N.309.X.WAT.B.A12

ncbi_submitter: MIT


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Jonquetella anthropi

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: Benin

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_submitter: University of British Columbia


ncbi_country: Canada

ncbi_isolation_source: dairy starter culture

ncbi_organism_name: Lacticaseibacillus rhamnosus R0011

ncbi_submitter: Institut Rosell Lallemand Inc.


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: Drainage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: India: Tamil Nadu; Chennai; Ashok Nagar

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_country: China: Tianjin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Guanba

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3022

ncbi_submitter: China Agricultural University


ncbi_country: France: Marseille

ncbi_isolation_source: saliva

ncbi_organism_name: Catonella massiliensis

ncbi_submitter: IHU - MI


ncbi_country: USA: Minnesota

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. 3211

ncbi_submitter: University of Minnesota


ncbi_country: Belgium

ncbi_organism_name: Streptococcus hyovaginalis DSM 12219

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Commensalibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_assembly_name: Rumen uncultured genome RUG13764

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella sp. 128420

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Klebsiella oxytoca 10-5249

ncbi_submitter: Broad Institute


ncbi_country: Argentina

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: IMG-taxon 2671180175 annotated assembly

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Lachnospiraceae bacterium UBA3386

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: A*STAR


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Chamaesiphon sp.

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 50 (4-2593475)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 50 (4-2593475)


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Germany


ncbi_organism_name: Agrobacterium tomkonis CFBP 6623

ncbi_strain_identifiers: CFBP 6623

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium tomkonis;x__Agrobacterium tomkonis CFBP 6623


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG