ncbi_country: China: Fujian

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_refseq_category: reference genome

ncbi_submitter: SC

ncbi_type_material_designation: assembly from type material


gtdb_representative: t

ncbi_isolation_source: plate contaminant

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. chlororaphis


ncbi_organism_name: Psychrobacter sp. HD31

ncbi_submitter: Institute of Zoology, Guangdong Academy of Sciences


ncbi_organism_name: Burkholderia pseudomallei RF6BP15

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_submitter: National Center for Global Health and Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus constellatus;sb__Streptococcus constellatus subsp. constellatus


ncbi_assembly_name: IMG-taxon 2600255310 annotated assembly

ncbi_organism_name: Kosakonia radicincitans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan: Nagoya

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Vienna


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: city of Enshi; Hubei Province

ncbi_isolation_source: waste liquid treatment facility of Bafeng Pharmaceutical Company

ncbi_organism_name: Flavobacterium enshiense DK69

ncbi_submitter: hzau


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Nanfang Hospital, Southern Medical University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


gtdb_type_species_of_genus: t

ncbi_country: Romania: Lake Saint Ana

ncbi_isolation_source: Saint Ana crater lake water

ncbi_organism_name: Sapientia aquatica

ncbi_submitter: Eotvos Lorand University


ncbi_country: New Zealand: Midcentral

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Stenotrophomonas chelatiphaga


ncbi_organism_name: Brucella melitensis bv. 3 str. Ether

ncbi_strain_identifiers: ether

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 3;x__Brucella melitensis bv. 3 str. Ether


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Shaanxi

ncbi_isolation_source: Diseased shoots

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Spain: Valencia

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Aeromonas encheleia


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Altererythrobacter xiamenensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_assembly_name: Rumen uncultured genome RUG11621

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent96

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Helicobacter pylori SA34A

ncbi_submitter: MHH


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Sichuan University


ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin43

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: MOJ bin43

ncbi_submitter: Monash University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Walailak University


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Ferrithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: Japan: Tokyo; Setagaya-ku

ncbi_organism_name: Streptomyces tricolor

ncbi_submitter: University of Tuebingen


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas mediterranea

ncbi_submitter: EMG


ncbi_country: South Korea: Suwon

ncbi_organism_name: Ramlibacter agri

ncbi_submitter: Kyonggi University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Japan: Gumma

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Pau University


ncbi_country: Iran: Persian Gulf; Hormu

ncbi_isolation_source: marine surface water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Reyranellales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Vulcanic forest soil

ncbi_organism_name: Paraburkholderia metrosideri

ncbi_submitter: LM-UGent


ncbi_country: Turkey: Diyarbakir; Ergani

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA

ncbi_isolation_source: Humeral stem explant

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Erwinia rhapontici

ncbi_submitter: University of British Columbia


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B289;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_country: United Kingdom

ncbi_isolation_source: colon

ncbi_organism_name: Escherichia coli HM605

ncbi_submitter: Cornell University


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU053

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome RUG10593

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: WA

ncbi_organism_name: Rhodococcus sp. 15-649-2-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 15-649-2-2


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient seawater

ncbi_organism_name: Ruegeria sp. HKCCA6707

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Brachymonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Malaysia

ncbi_isolation_source: effluent from poultry environment

ncbi_submitter: Institute for Medical Research Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Jedburgh


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Bicetre hospital


ncbi_country: China: Guangxi

ncbi_isolation_source: soil

ncbi_organism_name: Thermohalobaculum xanthum

ncbi_submitter: Guangxi Academy of Science


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: uncultured Mycolicibacterium sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14864

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: intestinal content

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: ChinaCDC


ncbi_assembly_level: Chromosome

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TRS17

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Deinococcus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Poland: Gdansk

ncbi_submitter: The University of Leicester


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Pennsylvania State University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Staphylococcus sp. HGB0015

ncbi_submitter: Broad Institute


ncbi_country: Iran: Tehran

ncbi_isolation_source: Uterine secretions

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Faculty of veterinary sciences Bu-Ali Sina university Hamedan, Hanedan,Iran


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnoanaerobaculum saburreum

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: cucumber

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shijiazhuang

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_country: USA

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Nonomuraea roseoviolacea subsp. roseoviolacea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Rhodococcus maanshanensis NBRC 100610

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Salmonella sp. 3C

ncbi_submitter: Inner Mongolia Minzu University


ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Camponotus modoc


ncbi_country: South Korea: Seoul

ncbi_organism_name: Hymenobacter aranciens

ncbi_submitter: Seoul Women's university


ncbi_country: Sudan

ncbi_isolation_source: Postoperative infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: King Abdulaziz University


ncbi_country: USA: MO

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: human gut

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Taiwan

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Chlamydia muridarum str. Nigg CM972

ncbi_submitter: UTHSCSA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg;x__Chlamydia muridarum str. Nigg CM972


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: AOP25_B1_coeur _bin _16

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: AOP25_B1_coeur _bin _16

ncbi_submitter: Genoscope


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Terrabacter terrigena

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin14

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin14

ncbi_submitter: Monash University


ncbi_country: South Africa: Kgalagadi Transfrontier Park; Kalahari Desert

ncbi_isolate: KAL bin4

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: KAL bin4


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 277047

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: China: Zhengyang city of Henan Province

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. WYCCWR 12677

ncbi_strain_identifiers: WYCCWR 12677

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0296

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_country: Ireland

ncbi_isolation_source: Grass

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Teagasc Food Research


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_submitter: Harvard University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Rumen uncultured genome RUG13251

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Paenarthrobacter sp. NyZ202

ncbi_submitter: shanghai jiaotong university


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Ohio

ncbi_isolation_source: alimentary canal

ncbi_organism_name: Aequitasia blattaphilus

ncbi_submitter: The Ohio State University


ncbi_country: China: Fujian

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces sp. HM190

ncbi_submitter: zhejiang university


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Leifsonia xyli


ncbi_country: China

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Hangzhou Centrer for Disease Control amd Prevention


ncbi_organism_name: Salmonella enterica subsp. indica

ncbi_submitter: National Center for Biotechnology Information


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Italy

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Bologna


ncbi_country: China: Chaoyang

ncbi_submitter: Beijing Union University


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Gainesville

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_submitter: ProBone

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;x__unclassified Candidatus Fermentibacteraceae;s__Candidatus Fermentibacteraceae bacterium


ncbi_organism_name: Streptococcus jiangjianxini

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Belgium

ncbi_isolation_source: Lab generated

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Antwerpen


ncbi_isolation_source: environmental swab sponge meat facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: San Francisco

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter sp. 226-1

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Thermoanaerobacter sp. X514

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: France

ncbi_isolation_source: raw cow milk (from organic producers)

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 279

ncbi_submitter: Brigham Young University


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_country: United Kingdom: Cambridge

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8435

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0699

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Anabaena sp. FACHB-1391

ncbi_submitter: South China Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces alfalfae

ncbi_submitter: Northwest A&F University


ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 81-176;x__Campylobacter jejuni subsp. jejuni 81-176-UMCW9


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Ferruginibacter sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ventilago sp. leaf

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Bacillus cereus group sp. BceL302

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL302


ncbi_organism_name: Paenibacillus sp. DS2015

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Planococcus donghaensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Papillibacter sp.


ncbi_organism_name: Neisseria sp. 23W00734

ncbi_submitter: Peking Union Medical College Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Bordetella sp.


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: C5 bin2

ncbi_organism_name: Synergistales bacterium

ncbi_strain_identifiers: C5 bin2

ncbi_submitter: China Agricultural University


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: Rumen uncultured genome RUG12537

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: Synechococcus sp. R55.5

ncbi_submitter: University of Montana


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_country: Norway

ncbi_isolation_source: Bivalve mollusc

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: marine water

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: freshwater MAG --- UppL5_bin-1100

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Malaga; Estacion Experimental  La Mayora ; Algarrobo Costa

ncbi_isolation_source: avocado roots

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Instituto de Hortofruticultura Subtropical y Mediterranea, IHSM-UMA-CSIC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China

ncbi_organism_name: Dysgonomonas sp. ZJ709

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Tang lab


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA

ncbi_organism_name: Escherichia coli 99.1805

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Thomasclavelia sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus huangxiaojuni


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_country: Canada: Lacombe

ncbi_organism_name: Robinsoniella sp.

ncbi_submitter: AAFC


ncbi_country: USA: AL

ncbi_isolation_source: Cloacae

ncbi_organism_name: Escherichia sp. MOD1-EC5110

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: India: Bidar town; Bidar taluk and district; Karnataka

ncbi_isolation_source: Milk

ncbi_submitter: Madurai Kamaraj University


ncbi_country: South Africa: Northwest of Grahamstown

ncbi_organism_name: Serratia ureilytica

ncbi_strain_identifiers: Four

ncbi_submitter: University of Regina


ncbi_country: USA: Philadelphia; PA

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Synechococcales cyanobacterium RM1_1_8

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: China: Shenzhen

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: China Agricultural University


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Micromonospora sp. NBC_01739

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: IMG-taxon 2695421047 annotated assembly

ncbi_organism_name: Flavobacterium terrae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: USA: VA

ncbi_isolation_source: swine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weslaco


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Ireland

ncbi_isolate: PHOPR KO1

ncbi_strain_identifiers: PHOPR KO1

ncbi_submitter: University College Dublin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_country: China: Jilin

ncbi_organism_name: Commensalibacter sp. M0134


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-I14


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Yangling; Shaanxi

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: College of Animal Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Brazil:Santa Catarina; Sao Jose

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasma sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Italy: Torino

ncbi_isolation_source: Mozzarella

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Universita di Torino


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: IMG-taxon 2585428188 annotated assembly

ncbi_organism_name: Acholeplasma oculi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium meliloti C0438LL

ncbi_submitter: University of Florence


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_organism_name: uncultured Syntrophobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Salmonella sp. SAL4432

ncbi_submitter: Zhejiang university


ncbi_organism_name: Sphingomonas sp. 1P06PA

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Bacillus cereus group sp. BceL046

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL046


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Streptomyces sp. NPDC057806

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pirellula sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Marinilabilia sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Candidatus Methylopumilus planktonicus


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Salmonella sp. C3235

ncbi_submitter: Sichuan University


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Aalborg University


ncbi_isolate: Clostridium neonatale M54

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale M54

ncbi_submitter: universite paris cite


ncbi_submitter: University of Manchester


ncbi_assembly_name: freshwater MAG --- YR_bin-3131

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Durham; NH

ncbi_organism_name: Rothia kristinae

ncbi_submitter: University of New Hampshire


ncbi_country: USA: Medford; MA

ncbi_isolation_source: Settle dust from an indoor track field house

ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Veillonella caviae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Korea: Jeollanam-do; Sinan-gun; Jeungdo-myeon

ncbi_isolation_source: Saltern

ncbi_organism_name: Gracilibacillus caseinilyticus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Prevotella sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Micronesia: Yap

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Mexico: Sinaloa; Angostura

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Calgary


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Acetobacter ascendens

ncbi_submitter: Microbial Institiue for Fermentation Industry


ncbi_organism_name: Saccharothrix saharensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Zhejiang

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Crew Resupply Vehicle

ncbi_isolation_source: CRV environmental surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Kwangchun

ncbi_organism_name: Sphingosinicella soli


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: China: Shenzhen

ncbi_organism_name: Butyricicoccus sp. AF35-5AC

ncbi_submitter: BGI


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Canada: Ontario

ncbi_isolation_source: Sus scrofa: Cecal content

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Krefeld;x__Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: South Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG13430

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2616644810 annotated assembly

ncbi_organism_name: Reichenbachiella agariperforans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: King's College London


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Clostridium sulfidigenes


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of La Rioja


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus;s__Liquorilactobacillus sucicola;x__Liquorilactobacillus sucicola DSM 21376 = JCM 15457


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Phyllobacterium sp. P30BS-XVII

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Norway: Vestfold

ncbi_isolation_source: abscess fluid

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Caloramator australicus RC3

ncbi_submitter: Microbial Gene Research and Resources Facility, Griffith University


ncbi_country: Colombia: Cali

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: South Korea

ncbi_organism_name: Caballeronia sp. EK

ncbi_strain_identifiers: EK

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: China

ncbi_isolation_source: a soil sample taken from the humic layer (3.5 m beneath the surface) of an underground ancient forest

ncbi_organism_name: Geobacter soli

ncbi_submitter: Guangdong Institute of Eco-Environmental and Soil Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnoanaerobaculum umeaense


ncbi_country: Poland

ncbi_isolation_source: gastrointestinal sample from 1 year old boy with bloody diarrhea; fever; vomiting and dehydration

ncbi_organism_name: Campylobacter coli 202/04

ncbi_submitter: Cornell University


ncbi_country: USA: Boston

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Bdellovibrio sp. HCB274

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Aliarcobacter sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_organism_name: Streptomyces sp. NPDC056626

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00754


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Pseudanabaena sp.


ncbi_organism_name: Streptomyces lavendulae


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD2_bin-1055

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwest University


ncbi_organism_name: Xenorhabdus taiwanensis

ncbi_submitter: National Chiayi University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1075

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Inverness


ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_assembly_name: freshwater MAG --- A-4_bin-089

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Thalassovita sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: lake water

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Finland: Lake Saimaa

ncbi_isolation_source: lice collected 2009 through 2017 from Pusa hispida saimensis

ncbi_organism_name: Deinococcus sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Silvanigrellales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Atlantic Ocean

ncbi_isolation_source: plastic

ncbi_organism_name: Vibrio sp. D404a

ncbi_submitter: NIOZ Royal Netherlands Institute for Sea Research


ncbi_country: Russia: Yaroslavl

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pantoea sp. USHLN256

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-196

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_strain_identifiers: new MAG-196

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ireland

ncbi_isolation_source: infant fecal swab

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University College Cork


ncbi_country: USA

ncbi_isolation_source: soft tissue

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE69

ncbi_submitter: Broad Institute


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: Dunlin

ncbi_organism_name: Campylobacter lari

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Foshan

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang University


ncbi_country: Nepal: Gokarna

ncbi_isolation_source: Wild animal

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Slovenia: Ankaran

ncbi_isolation_source: prosthetic joint infections

ncbi_submitter: Aarhus University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Novosphingobium bradum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG12616

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mycobacterium avium MAV_120709_2344

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;x__Mycobacterium avium MAV_120709_2344


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Phocaeicola massiliensis


ncbi_isolation_source: Hospital Universitario Son de Espases (Palma de Mallorca)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. MIT 9322

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 9322


ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: UCI 32

ncbi_submitter: Broad Institute


ncbi_organism_name: Paenibacillus chitinolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Denmark: Hygum

ncbi_isolation_source: surface soil

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujian Provincial Hospital


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: not available


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei University College of medicine


ncbi_assembly_name: E.coli sp strain PS00212

ncbi_country: Bolivia

ncbi_isolation_source: cocoa beans rejected by fine cocoa producers

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: colon biopsy

ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Tongling; Anhui Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Fictibacillus enclensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Staphylococcus sp. LKG3-3

ncbi_submitter: Chung-Ang university


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Patescibacteria group bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Salmonella sp. NW343

ncbi_submitter: Sichuan University


ncbi_submitter: Kyoto University


ncbi_isolation_source: cold seep

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Wisconsin; River Falls

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Stygiobacter electus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: OsloMet


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Opitutaceae;x__unclassified Opitutaceae;s__Opitutaceae bacterium BACL24 MAG-120322-bin51


ncbi_organism_name: Salmonella sp. s50894

ncbi_submitter: Zhejiang university


ncbi_country: France

ncbi_isolation_source: feces from infant with NECII

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV010

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1859R

ncbi_submitter: Broad Institute


ncbi_country: China: Xinjiang

ncbi_isolation_source: a gravel soil sample

ncbi_organism_name: Stenotrophomonas sp. I18B00994

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chungbuk National University


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: Canada: Lacombe

ncbi_organism_name: Coprococcus catus

ncbi_submitter: AAFC


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;s__Candidatus Allocopromorpha excrementipullorum


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Australia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: mud

ncbi_organism_name: Antiquaquibacter soli

ncbi_submitter: Jiangxi Normal University


ncbi_country: USA: District of Columbia

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Weeksella sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Algoriphagus halophilus

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Isoptericola peretonis

ncbi_submitter: Institute for Integrative Systems Biology (University of Valencia-CSIC)


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_assembly_name: Rumen uncultured genome RUG13957

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hand picked Trichodesmium colonies from marine 130 um planktonic net tow

ncbi_organism_name: Trichodesmium sp. St16_bin4-tuft

ncbi_submitter: University of Southern California


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Georgia

ncbi_isolation_source: week A5 calf 126 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Phenylobacterium aquaticum

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: North-West University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-1105

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Microcoleus sp. S36a_D1

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Elusimicrobia bacterium UBA3739

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium UBA3739


ncbi_isolation_source: shower drain

ncbi_organism_name: Enterobacter soli

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Phycisphaerales bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter sp. PL2

ncbi_submitter: University of Exeter


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Isolate 04;Patient 17

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: India: Kaziranga National Park in Assam

ncbi_isolation_source: soil

ncbi_organism_name: Micromonospora sp. HK10

ncbi_submitter: CSIR-North East Institute of Science and Technology, Jorhat-785006, Assam,India


ncbi_organism_name: Salmonella sp. C3241

ncbi_submitter: Sichuan University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: USA: WA

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: University of California, Riverside


ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Aliarcobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Chungbuk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: EPFL


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Fluviicola sp.


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Gujarat

ncbi_isolation_source: pebbles collected from Pingleshwar beach

ncbi_organism_name: Metabacillus endolithicus

ncbi_submitter: Changwon National University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacillus anthracis str. Australia 94

ncbi_strain_identifiers: Australia 94

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Australia 94


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 171

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria meningitidis ATCC 13091

ncbi_submitter: Baylor College of Medicine


ncbi_country: Slovenia

ncbi_isolation_source: thermally treated chicken meat

ncbi_organism_name: Listeria innocua

ncbi_submitter: Jozef Stefan Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M46070

ncbi_submitter: Broad Institute


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Microbacterium album

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)