ncbi_organism_name: Salmonella sp. NW363

ncbi_submitter: Sichuan University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-2242

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Scaffold

ncbi_submitter: University of Utah


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: bacterium UBP6_UBA1209

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP6_UBA1209


ncbi_isolation_source: not known

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Comamonas sp.


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: Bacillus JRS8

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Berlin

ncbi_organism_name: Helicobacter pylori Iso6

ncbi_submitter: Elzbieta Brzuszkiewicz, Goettingen Genomics Laboratory, Institute of Microbiology and Genetics, Goettingen, Germany


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Guangdong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Rumen uncultured genome RUG10910

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: washbasin

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-4d

ncbi_strain_identifiers: Hp P-4d

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: sturter culture Sacco Lyoflora B-7

ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: sample enriched by filtering microbes from a single sponge

ncbi_organism_name: Gammaproteobacteria bacterium Gsub

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_strain_identifiers: USDA 248


ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG14298

ncbi_organism_name: uncultured Oribacterium sp.


ncbi_isolation_source: vagina from healthy woman

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonas sp. SJZ085

ncbi_submitter: DOE Joint Genome Institute


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: India: Vellore

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: PA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Bacillus sp. FSL R7-0646

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R7-0646


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Gambia


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Denmark: Odense

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Region Zealand


ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Spribille Lab


ncbi_country: China: Zhengzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Von Damm hydrothermal vent plume at depth 2238m

ncbi_organism_name: Cupriavidus sp. UBA2027

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium RIFCSPLOWO2_01_FULL_50_28


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-7094

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Kenya

ncbi_organism_name: Christensenella sp. UBA767


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonas syringae pv. atrofaciens

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. atrofaciens


ncbi_assembly_name: freshwater MAG --- MJ110927A_bin-014

ncbi_organism_name: uncultured Nitrosomonadales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India: Cochin Region; Eloor

ncbi_isolation_source: pesticide contaminated sandy soil from an industrial site

ncbi_organism_name: Rheinheimera mesophila

ncbi_submitter: CSRI-IMTECH

ncbi_type_material_designation: assembly from type material


ncbi_country: Oman

ncbi_organism_name: Candidatus Phytoplasma crotalariae

ncbi_refseq_category: reference genome

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma crotalariae


ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Nitrospirae bacterium GWD2_57_9

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium GWD2_57_9


ncbi_organism_name: Terribacillus sp. JSM ZJ617

ncbi_strain_identifiers: JSM ZJ617

ncbi_submitter: Jishou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Terribacillus;x__unclassified Terribacillus;s__Terribacillus sp. JSM ZJ617


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia sp. WS1421

ncbi_submitter: Center for Disease Control and Prevention


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Darling Downs; Queensland

ncbi_isolation_source: Lesion on leaf tissue

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: Queensland University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_organism_name: Pseudomonas bubulae

ncbi_submitter: Macquarie University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptomyces sp. NPDC001922

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Kameda Medical Center


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: powdered infant formula

ncbi_organism_name: Cronobacter muytjensii

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Enterococcus sp. HMSC072H05

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Serratia sp. CY85266

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY85266


ncbi_organism_name: Micrococcus endophyticus


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Caulobacterales bacterium


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Salmonella sp. 741265143_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces roseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hebei

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: Hebei University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Texas

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University


ncbi_country: USA

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Cepheid


ncbi_assembly_name: freshwater MAG --- B-4_bin-224

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Bayern

ncbi_strain_identifiers: Brem 129

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Muenchen;x__Leptospira interrogans serovar Muenchen str. Brem 129


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: University of Queensland


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Paenibacillus pabuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Lake Superior

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: University of Chicago


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: USA: IL

ncbi_isolation_source: high protein dispersibility index (PDI) flour

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces albus subsp. albus

ncbi_submitter: University of Illinois


ncbi_organism_name: Pseudoalteromonas peptidolytica

ncbi_submitter: Ningbo University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Rattus rattus

ncbi_organism_name: Bartonella kosoyi

ncbi_strain_identifiers: Tel Aviv

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_organism_name: Sandaracinobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: deep sea cold seep

ncbi_organism_name: Ruficoccus sp. ZRK36

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


gtdb_type_species_of_genus: t

ncbi_country: Egypt

ncbi_isolation_source: sediment from highly alkaline soda lake

ncbi_organism_name: Desulfurivibrio alkaliphilus AHT 2

ncbi_strain_identifiers: AHT 2

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_assembly_level: Chromosome

ncbi_country: USA: MA; Boston

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Free State

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 45

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes onderdonkii


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella michiganensis


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 321

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 2139

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Croatia: port of Porec

ncbi_isolation_source: multiple lymph nodes from dolphin caught in fish net

ncbi_organism_name: Brucella ceti

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_submitter: Shandong University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Microbacter margulisiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: BGI


ncbi_isolation_source: Non-CF Blood; 2 weeks of bacteremia

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Natronohydrobacter sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Mexico: Morelos

ncbi_isolation_source: blood

ncbi_organism_name: Anaplasma marginale

ncbi_submitter: INIFAP


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: grass with manure

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: GS T1 LAM CIPRO 4

ncbi_submitter: Maynooth University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Driveline

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Christensenella intestinihominis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC015125

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Abdominal abscess

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Pittsburgh


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Intraabdominal infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae CP1047(20)

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Thomasclavelia ramosa


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_submitter: Oregon State University


ncbi_isolation_source: chicken meat

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of California, Berkeley


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: Dental biofilm

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Sediminivirga luteola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: HLHR

ncbi_submitter: Indian Institute of Technology-Roorkee


ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Vibrio diazotrophicus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Anaerotruncus sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA: Nebraska

ncbi_isolation_source: blood

ncbi_submitter: UNMC


ncbi_assembly_name: freshwater MAG --- Loclat_bin-16190

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: India: Punjab; Ludhiana; Khandoor

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: Mayo Clinic; Rochester; Minnesota

ncbi_isolation_source: ventricular Assist Device

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Qinghai-Tibetan Plateau; Gaihai lake

ncbi_isolation_source: sediments

ncbi_organism_name: Thalassobacillus sp. CUG 92003

ncbi_submitter: State Key Laboratory of Biogeology and Environmental Geology


ncbi_organism_name: uncultured Actinobaculum sp.


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Dietzia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Jiangxi

ncbi_isolation_source: Rhizosphere of camphor trees

ncbi_organism_name: Pseudomonas sp. BN605


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE4

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: UTHealth School of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: propagated starter culture used in cheese manufacturing

ncbi_submitter: Top Institute Food and Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis str. TIFN4


ncbi_isolation_source: Ascitic fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan: Aomori Prefecture; Nakatsugaru District; Nishimera Village; Kawaratai; Shirakami Natural Science Park of the Hirosaki University

ncbi_isolation_source: acidic soil of a deciduous forest

ncbi_organism_name: Acidicapsa acidisoli

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Jilin

ncbi_organism_name: Gilliamella sp. W8126

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Sweden: Kosterfjord

ncbi_isolation_source: Top-layer sediments

ncbi_organism_name: Antarctobacter heliothermus

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_assembly_name: IMG-taxon 2663762742 annotated assembly

ncbi_organism_name: Chryseobacterium taihuense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Roseburia sp. CAG:10041_57


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: USDA


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_country: Germany

ncbi_isolation_source: Brassica

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: CEBITEC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Arctic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio sp. G41H

ncbi_submitter: Shandong University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 34 - depth 258m

ncbi_organism_name: SAR324 cluster bacterium REDSEA-S15_B6

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium REDSEA-S15_B6


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Enterobacter mori

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Enterobacter chuandaensis

ncbi_strain_identifiers: AEC

ncbi_submitter: University of Putra Malaysia


ncbi_country: Australia

ncbi_isolation_source: gut necropsy from a cow with clinical Bovine Johne s disease

ncbi_submitter: The Commonwealth Scientific and Industrial Research Organisation (CSIRO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis CLIJ623


ncbi_organism_name: Streptococcus pseudopneumoniae


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Brevundimonas sp. MYb52

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: CSF


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: BGI


ncbi_country: Greenland

ncbi_isolation_source: glacial ice core

ncbi_organism_name: Rhodococcoides fascians GIC36

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Hubei; Xinzou

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_country: India: Chandigarh; PGIMER

ncbi_isolation_source: Duodenal mucosa of Celiac disease patient

ncbi_organism_name: Serinicoccus chungangensis

ncbi_submitter: Institute of Microbial Technology


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Yangzhou University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ICBKPJB

ncbi_submitter: Federal University of Paraiba


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Isoptericola sp. NPDC056134

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas palmensis

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: University of Bremen


ncbi_country: New Zealand

ncbi_isolation_source: pond receiving effluent from an anaerobic solids digester; Hamilton; New Zealand

ncbi_organism_name: Succinispira mobilis DSM 6222

ncbi_submitter: JGI


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas syringae pv. pisi

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. pisi


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Stenotrophomonas sp. 69-14

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: BEI Resources


ncbi_country: China: Mei; Shaaxi

ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: Shaanxi Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: Food

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 66.F.99


ncbi_country: USA: Missouri

ncbi_organism_name: Haematobacter missouriensis

ncbi_submitter: CDC


ncbi_country: Spain

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Brigham Young University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: gut

ncbi_organism_name: Orbaceae bacterium ESL0727

ncbi_submitter: University of Lausanne


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH15-G10

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Ghana: Accra

ncbi_isolation_source: mid-stream urine sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Norway

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_assembly_name: Dietzia sp. UCD-THP

ncbi_country: USA:CA; Davis

ncbi_isolation_source: residential toilet handle

ncbi_organism_name: Dietzia sp. UCD-THP

ncbi_strain_identifiers: UCD-THP

ncbi_submitter: UC Davis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Protoclostridium;s__Candidatus Protoclostridium stercorigallinarum


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: Faeces


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 34 - depth 10m

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium REDSEA-S10_B10N8


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfarculus sp.

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Hoylesella shahii

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Breznakia sp. PFB2-30

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hunan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Salmonella sp. WF323

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: gold-copper mine

ncbi_organism_name: Cupriavidus metallidurans

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactonifactor sp. BIOML-A4

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Eubacterium pyruvativorans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California; Modesto

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321


ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: NTNU


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia: Cairns

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: POLYPHAGsp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Anaerotruncus sp. CAG:390

ncbi_submitter: DTU


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Chile: Santiago

ncbi_isolation_source: bovine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_submitter: McGill University


ncbi_country: South Korea: Daejeon; Yusong

ncbi_isolation_source: soil from farming field

ncbi_organism_name: Agromyces humi

ncbi_submitter: Institute of Microbial Ecology and Resources


ncbi_country: China: Shenzhen

ncbi_submitter: BGI-Shenzhen


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. MM2020_1

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MM2020_1


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Carlos Chagas - Fiocruz Parana


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_submitter: The University of Tokyo


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Komagataeibacter diospyri

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CSSED10-310;s__candidate division CSSED10-310 bacterium


ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae;x__Pseudomonas syringae pv. syringae PD2766


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_country: China: Yunnan Province

ncbi_isolation_source: river water

ncbi_organism_name: Asticcacaulis machinosus

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: Philippines: Philippine Rise; Benham Bank Seamount

ncbi_organism_name: Idiomarina sp. 29L

ncbi_submitter: University of the Philippines Los Banos


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Sphaerisporangium sp. NPDC049003

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Italy

ncbi_isolation_source: duedonoscope instrument

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: prosthetic joint infection

ncbi_submitter: Geneva University Hospitals, Genomic Research Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis;sb__Streptococcus oralis subsp. tigurinus;x__Streptococcus oralis subsp. tigurinus 2426


ncbi_organism_name: Streptococcus suis YS123

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_isolation_source: Temperate decuduous forest biome soil

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Huazhong Agriculture University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Thailand: Phrae

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: household water source

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: faecal

ncbi_organism_name: Atlantibacter hermannii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SurvCARE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Jiella sp. M17.18

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 26016_4

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shaanxi; Xianyang Lake

ncbi_isolate: XYR

ncbi_isolation_source: sediments

ncbi_strain_identifiers: XYR

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Parafannyhessea umbonata

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: enamel caries of a child

ncbi_organism_name: Streptococcus mutans KK23

ncbi_submitter: Institute of Bioprocess and Biosystems Engineering


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: rumen

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: Ben Gurion University of the Negev


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: Loki non-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Halopseudomonas sabulinigri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_assembly_name: ENTA

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Biotechnology and Biomedicine Centre of the Academy of Science and Charles University


ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Finland: Lake Saimaa

ncbi_isolation_source: lice collected 2009 through 2017 from Pusa hispida saimensis

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Drancourtella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Antioquia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Arctic Ocean: Gakkel Ridge; Loki s castle

ncbi_isolation_source: marine sediment core GS08_GC12; 126 cmbsf

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Bifidobacterium adolescentis ATCC 15703

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_country: Russia: Moscow

ncbi_isolation_source: larvae

ncbi_organism_name: Bacillus sp. VKPM B-3276

ncbi_strain_identifiers: VKPM B-3276

ncbi_submitter: Kurchatov Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. VKPM B-3276


ncbi_organism_name: Escherichia coli

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: vagina

ncbi_submitter: University of Florida


ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Choladocola avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladocola;s__Candidatus Choladocola avistercoris


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sphaerotilus natans

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Seoul National University, College of Medicine


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC088350

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Brevundimonas sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Michigan State University


ncbi_country: China

ncbi_isolation_source: microbial inoculant

ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11037

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Korea Basic Science Institute


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0063

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFCSPLOWO2_02_FULL_43_9


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0811


ncbi_organism_name: Phocaeicola sartorii


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: uncultured Cyclobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_isolation_source: InSight Launch Vehicle Hardware

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Liberty Biosecurity


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPLOWO2_12_FULL_43_12


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: University of Arizona


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: biofilm from deap sea brine pool

ncbi_organism_name: Fidelibacterota bacterium TCS55

ncbi_submitter: Hong Kong University of Science And Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium TCS55


ncbi_organism_name: Saxibacter everestensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusobacterium ulcerans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-07036

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Leuconostoc citreum


ncbi_country: USA: IA

ncbi_isolation_source: porcine pig intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: freshwater MAG --- VK4_bin-0757

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Chlamydia pneumoniae

ncbi_submitter: Vircell S.L.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: stool

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000960


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Candidatus Desulfobacillus sp.

ncbi_submitter: Radboud University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Desulfobacillus;x__unclassified Candidatus Desulfobacillus;s__Candidatus Desulfobacillus sp.


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Botswana

ncbi_isolation_source: nasal swab from healthy carrier

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3986 N3

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3986 N3


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Xanthomonas arboricola pv. corylina

ncbi_submitter: INRA


ncbi_country: China: Yingtan in Jiangxi Provice

ncbi_isolation_source: less and more altered tuff

ncbi_organism_name: Rhizobium sp. S41

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Actinomyces graevenitzii


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_submitter: Aston University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: UFTM


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Argentina: Rosario

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15226

ncbi_submitter: Broad Institute


ncbi_country: USA: Woods Hole region; Massachusetts

ncbi_isolation_source: plankton

ncbi_organism_name: Leptolyngbya sp. PCC 7375

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Leptolyngbyales;f__Leptolyngbyaceae;x__Leptolyngbya group;g__Leptolyngbya;x__unclassified Leptolyngbya;s__Leptolyngbya sp. PCC 7375


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolate: Fecal samples

ncbi_strain_identifiers: Fecal samples;fimH90;O113:H6;B2;3616 (ST Warwick)

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Tamworth

ncbi_isolation_source: necrotic enteritis field case

ncbi_submitter: RMIT


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Bangladesh

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Cardiff University


ncbi_country: Mexico: Sonora

ncbi_isolation_source: Seawater from broodstock tank

ncbi_organism_name: Vibrio campbellii CAIM 333

ncbi_strain_identifiers: CAIM 333

ncbi_submitter: CIAD, A.C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii CAIM 333


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfotomaculum sp.

ncbi_submitter: University of Bremen


ncbi_organism_name: Pseudomonas sp. SJZ124

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Hickory Corners; MI

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. KBS0702

ncbi_submitter: Indiana University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Sphingomicrobium maritimum

ncbi_submitter: Hohai University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA4918

ncbi_submitter: University of Queensland


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. AM37-9BH

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei 3233-85

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Central African Republic

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Clostridium septicum

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Greenland: Nuuk fjord

ncbi_isolation_source: marine sediment after 17 days of incubation with protein additions

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolate: Psychrobacter maritimus Pi2-20

ncbi_isolation_source: sea ice

ncbi_organism_name: Psychrobacter maritimus

ncbi_strain_identifiers: Psychrobacter maritimus Pi2-20

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Moraxella sp. 7664LN

ncbi_submitter: Brazilian Agricultural Research Corporation


ncbi_organism_name: Vibrio sp. OPT20

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Stenotrophomonas sp. 2619

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Institut Pasteur


ncbi_country: Ukraine: Institute of food biotechnology and genomics; Kyiv

ncbi_isolation_source: Fermenter media

ncbi_organism_name: Clostridium pasteurianum

ncbi_submitter: Explogen LLC


ncbi_country: China: Zhejiang

ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-8

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Calgary


ncbi_country: Japan

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Kobe Institute of Health


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eisenbergiella tayi

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pelobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: blood


ncbi_isolation_source: fresh feces

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Corynebacterium otitidis ATCC 51513

ncbi_submitter: Center for Biotechnology


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Senegal

ncbi_isolation_source: stool

ncbi_organism_name: Brucella intermedia

ncbi_submitter: institut hospitalo-universitaire IHU


ncbi_country: USA

ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: food

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_submitter: Makerere University


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium