ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: New Jersey; Brendan T. Byrne State Forest

ncbi_genome_representation: full

ncbi_isolation_source: gut dissection

ncbi_organism_name: Spiroplasma attinicola

ncbi_refseq_category: reference genome

ncbi_submitter: University of Connecticut


ncbi_assembly_level: Scaffold

ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: BGI


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: EMG


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


gtdb_representative: t

ncbi_organism_name: Steroidobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas terrigena

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Human feces

ncbi_organism_name: Blautia sp. LMAG:69

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: France

ncbi_isolation_source: baby blood culture

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: UMR9198, Universite Paris Saclay


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sp. Marseille-P299

ncbi_submitter: URMITE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_country: Mexico

ncbi_strain_identifiers: ICMP 4996

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. striafaciens


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Klebsiella sp. 91301

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: Minnesota

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_country: Indian Ocean

ncbi_isolation_source: Deep-sea water

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_country: Antarctica: King George Island

ncbi_isolation_source: Chronically low temperature and dry polar region

ncbi_organism_name: Arthrobacter sp. AQ5-05

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Tang lab


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: mid-stream urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Canada

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Germany

ncbi_isolation_source: Edible insect Gryllus bimaculatus (Pet Feed Store)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: Wadsworth Centre, New York State Department of Health


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Streptomyces sp. 7N604

ncbi_submitter: Ondokuz Mayis University


ncbi_isolate: SPRUCE 236

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SPRUCE 236

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bilifractor sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Waltera sp.


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: IZQWI

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India: Chennai

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: United Kingdom


ncbi_isolation_source: Tibetan traditional dairy products

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: wastewater

ncbi_organism_name: Runella sp.

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_isolation_source: olive fermentation

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2170

ncbi_submitter: Brigham Young University


ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Massachusetts

ncbi_isolation_source: clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Neimeng; Tongliao

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: Colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: Poland

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_country: China: Wuhan

ncbi_organism_name: Paenibacillus mucilaginosus

ncbi_submitter: Wuhan Kernel Bio-tech Co., Ltd


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Hunan; Chenzhou

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Hunan Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- Loc081215-8m_bin-2507

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Don State Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma stercorigallinarum


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: manure wastewater

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Mexico: Los Azufres

ncbi_isolation_source: geothermal lake

ncbi_organism_name: Acidocella sp. MX-AZ02

ncbi_submitter: Center for Genomic Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of South Australia


ncbi_organism_name: Streptomyces sp. AC04842

ncbi_submitter: Sarawak BIodiversity Centre


ncbi_isolation_source: cheese

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Clermont; QLD

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3776


ncbi_assembly_level: Chromosome

ncbi_country: South Africa: Gauteng

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Johannesburg


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: South China University of Technology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Norway: Dasan Korean Arctic Station

ncbi_organism_name: Caballeronia sordidicola

ncbi_submitter: Pukyong National University


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Hymenobacter qilianensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: AAFC


ncbi_country: Canada: Calgary

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_isolate: metabat2_XCR1_HET_6748_bwa.77 MAG

ncbi_organism_name: Candidatus Gallimonas gallistercoris

ncbi_strain_identifiers: metabat2_XCR1_HET_6748_bwa.77 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas gallistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas gallistercoris


ncbi_country: Italy: Foggia

ncbi_isolation_source: Hospital setting

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Foggia


ncbi_assembly_name: IMG-taxon 2617270738 annotated assembly

ncbi_organism_name: Gilliamella intestini

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Thalassospira sp. MBR-102

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Bifidobacterium thermophilum DSM 20210

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Bioaster


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella pickettii JCP8017A

ncbi_submitter: Washington University


ncbi_country: Arctic Ocean: Arctic deep sea; Hakon Mosby Mud Volcano

ncbi_isolation_source: sediment

ncbi_organism_name: Pelotomaculum sp. UBA3103

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: South China Sea

ncbi_isolation_source: Synechococcus sp. YX04-3 co-culture from sea water

ncbi_organism_name: Phycisphaera sp.

ncbi_submitter: Synechococcus sp. YX04-3


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acetobacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_isolation_source: goiter swab

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: University of Alberta


ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolate: AOP15_B1_surf _bin _3

ncbi_strain_identifiers: AOP15_B1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_organism_name: Microgenomates group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Eisenbergiella sp.


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus MRSN 2761

ncbi_strain_identifiers: MRSN 2761

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China

ncbi_isolation_source: Interal medicine

ncbi_submitter: Guangzhou Medical University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: ascitic fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_isolation_source: soil

ncbi_organism_name: Phenylobacterium montanum

ncbi_submitter: Hunan Institute of Microbiology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Succinatimonas hippei

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: Casimicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Georgia

ncbi_isolation_source: Collected from soil near Alydus sp.

ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: apoplast

ncbi_organism_name: Rhodococcus sp. KB6

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. KB6


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Demequina rhizosphaerae

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Oscillibacter sp.


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. 01-M-05-SI-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 1

ncbi_organism_name: Akkermansiaceae bacterium


ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Norway

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Kvitko Lab


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Sporosarcina quadrami

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pseudomonas rhizophila

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom:England


ncbi_country: Estonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: SRCAMB


ncbi_submitter: FDA/CDC


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: University of Sydney


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: IL

ncbi_isolation_source: high protein dispersibility index (PDI) flour

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Morganella sp.


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Herbinix luporum

ncbi_submitter: Ecole Centrale de Lyon


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Nocardia amikacinitolerans NBRC 108937

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Exiguobacterium profundum

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium profundum


ncbi_organism_name: Streptomyces carpaticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 monocultured in Synthetic Cystic Fibrosis Media for 24 days in the absence of imipenem

ncbi_submitter: University of Warwick


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 586

ncbi_submitter: Ghent University


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Nebraska-Lincoln


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Pediococcus acidilactici


ncbi_country: Austria

ncbi_submitter: University of Zurich


ncbi_organism_name: Collinsella provencensis

ncbi_submitter: URMITE


ncbi_country: Denmark

ncbi_isolation_source: throat swab

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 152

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: cheese

ncbi_organism_name: Pseudomonas paracarnis

ncbi_submitter: Federal University of Vicosa


ncbi_country: USA: MO

ncbi_isolation_source: food water

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Norway: Foreland of Midtre Loven

ncbi_isolation_source: Svalbard biocrust sample

ncbi_organism_name: Bdellovibrio svalbardensis

ncbi_submitter: Ulsan National Institute of Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG13186

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Mahatma Gandhi Hospital - Ward 1

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0048

ncbi_submitter: Broad Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas sp. 600282

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: Spribille Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: IMG-taxon 2603880187 annotated assembly

ncbi_organism_name: Fructobacillus durionis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: United Kingdom:Suffolk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Ethiopia: Amhara

ncbi_isolation_source: Health Facility

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Bahir Dar University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Canterbury Health Laboratories


ncbi_country: Australia: Sydney

ncbi_isolation_source: clinical sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Oxford


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Helicobacter bizzozeronii CIII-1

ncbi_submitter: University of Helsinki, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Distal colon


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:1058

ncbi_submitter: DTU


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycolicibacterium smegmatis MC2 51

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Rhodospirillales bacterium


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: Brazil: Cabo Branco Beach

ncbi_isolation_source: Coastal Water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Paraiba (UFPB)


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: Australia: Shark Bay; Heron Island; Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium AqS3

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Weissella cibaria

ncbi_submitter: BGI


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Syntrophaceae bacterium UBA2185


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: China: Nanchang; Jiangxi Province

ncbi_isolation_source: Earthworm

ncbi_organism_name: Streptomyces olivaceus


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_country: China: Chiu-lung River

ncbi_isolation_source: Mangrove habitat soil

ncbi_organism_name: Bacillus sp. ms-22

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ms-22


ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_isolation_source: blood

ncbi_submitter: Sun-yat Sen University


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S053

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S053


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Korea: Jinju

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: South Korea: Suncheon Bay

ncbi_isolation_source: Tidal flat sediments

ncbi_organism_name: Shewanella aestuarii

ncbi_submitter: Karolinska Institutet


ncbi_country: Taiwan: Taoyuan

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: University of Sheffield


ncbi_country: Brazil

ncbi_isolation_source: Brassica oleracea

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. 147


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. BCW_4332

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG10161

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with inulin

ncbi_organism_name: Phocaeicola plebeius


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: EPFL


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus devriesei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Human throat swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: the artic university of norway


ncbi_country: China: Nanjing

ncbi_organism_name: Shigella sp. PIB

ncbi_strain_identifiers: PIB

ncbi_submitter: Shanxi An-Ning-Yunsheng Biotechnology Limited Company


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia sp. WS1088

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL047

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL047


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Queensland university of technology


ncbi_organism_name: Bacillus yunxiaonensis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Thailand

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Poland: Zabrze

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: University of Silesia in Katowice


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Yale Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Wigglesworthia;s__Wigglesworthia glossinidia;x__Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis


gtdb_type_species_of_genus: t

ncbi_organism_name: Nissabacter archeti

ncbi_submitter: URMITE


ncbi_organism_name: Brevundimonas terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: blood culture of a patient with infective endocarditis

ncbi_organism_name: Streptococcus sinensis

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Santa Cruz

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: University of California - Santa Cruz


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetaceae bacterium


ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: China: Guangdong; Shaoguan

ncbi_isolation_source: lymphaden

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: China: Henan

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: Entasis Therapeutics


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. OF02-10


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Dysgonomonas mossii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Ireland: Cork

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University College Cork


ncbi_isolation_source: food

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Netherlands

ncbi_isolation_source: Tissues

ncbi_organism_name: Staphylococcus aureus M520-1

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_country: China: Suzhou

ncbi_organism_name: Eubacterium sp. MSJ-13

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. MSJ-13


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Laboratory of Bacterial Genomics Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Hoylesella loescheii

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Yangzhou university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_country: China: Baiyang Lake

ncbi_organism_name: Pseudomonas sp. R-28-1W-6

ncbi_submitter: Institute of Microbiology,Chinese Academy of Sciences


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Erlangen

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Aarhus University


ncbi_country: South Korea: Damyang; Jeonnam province

ncbi_isolation_source: rectal swab

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of South Australia


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: China: Jiangsu province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20093950


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Penn State University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: uncultured Faecalimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Streptomyces sp. NPDC057747

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_isolate: AOP1_F1_surf _bin _4

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP1_F1_surf _bin _4

ncbi_submitter: Genoscope


ncbi_submitter: University of Manchester


ncbi_organism_name: Chitinivibrionales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W12628

ncbi_submitter: Broad Institute


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA2727

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Rubripirellula obstinata

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: Rumen uncultured genome RUG642

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: North Dakota; Cottonwood Lake Study Area

ncbi_isolation_source: Prairie Pothole Region wetland sediments

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: uncultured UBA985 Verrucomicrobiales SW04_Bin1

ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: iBB-IST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Vibrio nigripulchritudo ENn2

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG13933

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Portugal

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Blastopirellula sp.

ncbi_submitter: University of Michigan


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Antarctica: Schirmacher Oasis

ncbi_isolation_source: Fresh Water Lake L43 Ice Water Interface

ncbi_organism_name: Hymenobacter sp. IS2118

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus DAR133

ncbi_submitter: Broad Institute


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolation_source: Littoral of the White Sea

ncbi_organism_name: Thiothrix lacustris

ncbi_strain_identifiers: WS

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tang lab


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_submitter: UC Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;x__unclassified Porphyromonadaceae;s__Porphyromonadaceae bacterium COT-184 OH4590


ncbi_country: Germany: Westerhofer Bach

ncbi_isolation_source: hard water rivulet

ncbi_organism_name: Flavobacterium reichenbachii

ncbi_submitter: FDA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Chung Hsing University


ncbi_country: Switzerland

ncbi_isolation_source: liver

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: ProBone


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Biology Centre CAS


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonas corrugata

ncbi_submitter: University of Toronto


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNICAMP


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2612PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Sudan: Khartoum; Military Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ectopseudomonas alcaliphila NBRC 102411

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 6 (3-8296502)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 6 (3-8296502)


ncbi_country: Australia: Melbourne

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Nigeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_submitter: University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0280R


ncbi_country: USA: California; The Cedars highly alkaline spring

ncbi_isolation_source: serpentinized groundwater

ncbi_organism_name: Candidatus Liptonbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Liptoniibacteriota;x__unclassified Candidatus Liptonbacteria;s__Candidatus Liptonbacteria bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: C4 bin12

ncbi_organism_name: Bacilli bacterium

ncbi_strain_identifiers: C4 bin12

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: BGI Research


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW987

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Padova


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Aeromonas sp. 603607

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: University of Minnesota


ncbi_organism_name: Blautia faecis


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-043

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Aquificaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-782

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: Paenibacillus dendritiformis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Marinifilum flexuosum


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_country: China: Qingdao

ncbi_isolation_source: soil

ncbi_organism_name: Halopseudomonas laoshanensis

ncbi_submitter: Shandong Peanut Reaearch Institute


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_submitter: EMG


ncbi_organism_name: Dyadobacter sp. BE31

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_country: Taiwan

ncbi_isolation_source: rice root

ncbi_organism_name: Burkholderia sp. LS-044

ncbi_submitter: National Chung Hsing University


ncbi_country: France: Nantes

ncbi_isolation_source: periprosthetic tissue specimen

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: Mediterranean Sea

ncbi_organism_name: Ponticaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: ED

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_country: China: Zhengzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_assembly_name: freshwater MAG --- Loc090907-6m_bin-704

ncbi_submitter: BILS


ncbi_country: France: Regneville-sur-Mer

ncbi_isolation_source: river water

ncbi_organism_name: Enterococcus hirae


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Denmark

ncbi_organism_name: Bacillus cereus


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: The University of Queensland


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: SOAPdenovo for version v2.01 of the Marinomonas sp. D104 genome

ncbi_country: Arctic Ocean

ncbi_isolation_source: surface sediment from Makarov Basin at depth 4000 m and layer 8-12 cm

ncbi_organism_name: Marinomonas profundimaris

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Sphingomonas sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: EQA test strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Crickella equi

ncbi_submitter: Quadram Institute


ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: INRA GRIGNON


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3093

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Ectemnius continuus


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: USA: Griffith Park in Los Angeles; CA

ncbi_isolation_source: soil

ncbi_organism_name: Sporosarcina ureae

ncbi_submitter: California State University Northridge


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Washington University School of Medicine


ncbi_isolate: AOP42_C2_surf _bin _21

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP42_C2_surf _bin _21

ncbi_submitter: Genoscope


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Fujian

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geomonas diazotrophica

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: feces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Enterococcus sp. HMSC072H05

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Oceanobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Beijing

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: UNIVERSITY OF NORTH BENGAL


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 231

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Candidatus Hepatincola sp. Pdp

ncbi_strain_identifiers: Pdp

ncbi_submitter: Universite de Poitiers ecologie et Biologie des Interactions, UMR CNRS 7267

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodospirillales;f__Candidatus Hepatincolaceae;g__Candidatus Hepatincola;x__unclassified Candidatus Hepatincola;s__Candidatus Hepatincola sp. Pdp


ncbi_isolate: AOP19_H1_surf _bin _13

ncbi_organism_name: Kluyvera intermedia

ncbi_strain_identifiers: AOP19_H1_surf _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Fusobacteriaceae bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rhodoferax sp.


ncbi_organism_name: Salmonella sp. 2020_1459

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_assembly_name: freshwater MAG --- Day2-6_bin-292

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Alcaligenaceae bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella sp. NW98

ncbi_submitter: Sichuan University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Hydrothermal vent sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dialister invisus


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: Hunan Normal University


ncbi_organism_name: Nocardioides sp. GCM10027113

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Antioquia


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridium caseinilyticum

ncbi_submitter: Agroscope


ncbi_assembly_name: Rumen uncultured genome RUG14177

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guizhou

ncbi_isolation_source: rock from karst cave

ncbi_organism_name: Sphingomonas cavernae

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: USA

ncbi_organism_name: Rhizobium sp. AB2/73

ncbi_submitter: Institute of Biology Leiden