ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: (MES) mesopelagic zone

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolate: AOP7_D1_surf _bin _2

ncbi_organism_name: Marinomonas foliarum

ncbi_strain_identifiers: AOP7_D1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_assembly_level: Contig

ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


gtdb_representative: t

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Flavobacteriaceae bacterium bin25

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: Russia: Lake Baikal

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: Limnological Institute Siberian Branch of the Russian Academy of Sciences


ncbi_assembly_name: Exiguobacterium sp. strain CinTr1

ncbi_organism_name: Exiguobacterium sp. CinTr1

ncbi_submitter: iBB-IST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. CinTr1


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: USA: CA

ncbi_isolation_source: Raw cream

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Fudan University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China: Shenzhen

ncbi_organism_name: Weissella confusa

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmb

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Bradyrhizobium sp. URHA0013

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: SC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Korea: an estuary in the Asan area

ncbi_isolation_source: estuary sediment

ncbi_organism_name: Roseovarius confluentis

ncbi_refseq_category: reference genome

ncbi_submitter: Shandong University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: PS1 clade bacterium

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;s__PS1 clade bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_assembly_name: Rumen uncultured genome RUG385

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: IAL 52

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Aeromonas diversa CDC 2478-85

ncbi_strain_identifiers: CECT 4254

ncbi_submitter: UCONNMISEQ


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_country: China: Liaoning

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: EMG


ncbi_country: China: Sichuan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonomuraea cavernae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Maine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Denmark: Zealand

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospira eligens


ncbi_country: South Korea:Jeju

ncbi_isolation_source: sediment soil of lava forest wetlands

ncbi_organism_name: Jatrophihabitans telluris

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Kosakonia cowanii


gtdb_type_species_of_genus: t

ncbi_country: France

ncbi_isolation_source: forest soil

ncbi_organism_name: Scleromatobacter humisilvae

ncbi_submitter: University of Occidental Brittany


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sp. NBC_01236

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Proteus penneri

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Hydrogenophaga sp. UC242_50

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides fimicaballi


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Thermodesulfatator sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17973

ncbi_submitter: Broad Institute


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alachua

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli LF82

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Clostridiales bacterium Firm_07


ncbi_organism_name: uncultured Eudoraea sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: Technical University of Denmark


ncbi_isolate: AOP1_A2_coeur _bin _7

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP1_A2_coeur _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycolicibacterium insubricum

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_country: Pacific Ocean: Monterey Canyon

ncbi_isolation_source: gills from mollusc collected from dive Tiburon 406

ncbi_submitter: Universite de Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Vesicomyidisocius;x__unclassified Candidatus Vesicomyidisocius;s__Candidatus Vesicomyidisocius sp. Pext_18_S21


ncbi_country: Canada: Alberta

ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: FL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: Genome of MAK757

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_organism_name: Abditibacteriia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG11419

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium GW2011_GWC2_54_8


ncbi_isolation_source: Freeze dried sample

ncbi_organism_name: Avibacterium paragallinarum

ncbi_strain_identifiers: AVPG 221

ncbi_submitter: Veterinary Biotechnology


ncbi_organism_name: Catenuloplanes indicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: Paenibacillus elgii

ncbi_submitter: Lab of Bio-molecular and Gene technology Institute of Biotechnology and Environment, Tay Nguyen University


ncbi_country: USA: Boston

ncbi_organism_name: Escherichia coli

ncbi_submitter: Boston University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: Swansea University


ncbi_country: South Korea: Goseong-gun

ncbi_isolation_source: Fermented liquor based on wild grass

ncbi_organism_name: Cohnella herbarum

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Germany

ncbi_isolation_source: environment

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: bile duct discharge

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_isolation_source: Bovine

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Staphylococcus warneri Lyso 1 2011

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus warneri;x__Staphylococcus warneri Lyso 1 2011


ncbi_country: China:Henan; Nanyang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_country: Israel: Negev Desert

ncbi_isolation_source: Flea

ncbi_organism_name: Bartonella krasnovii

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0062

ncbi_submitter: Broad Institute


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Acinetobacter johnsonii


ncbi_organism_name: Streptomyces sp. NBC_01178

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes Lm_1886

ncbi_submitter: University of Milan


ncbi_country: Denmark

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: marine sediment (ENVO:00002113)

ncbi_organism_name: Brachybacterium sp. P6-10-X1

ncbi_submitter: Polar Research Institute of China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Aeromonas salmonicida subsp. achromogenes

ncbi_submitter: Universite Laval


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Monash University


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 30 days

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Shantou University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Queensland

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_organism_name: Phocaeicola vulgatus


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_40_16


ncbi_country: Austria

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang university


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: a wastewater-treating system

ncbi_organism_name: Caballeronia zhejiangensis

ncbi_submitter: Laboratory of Biocatalysis and Synthetic Biotechnology


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: World Institute of Kimchi


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E2479

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Fiji

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Actinoplanes octamycinicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium modestum HL037PA3

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of Vienna


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Cocoa bean fermentation

ncbi_organism_name: Periweissella fabaria

ncbi_submitter: LM-UGent


ncbi_country: Mali: Bamako

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


ncbi_country: Japan: Gifu

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Japan

ncbi_isolation_source: intestine of infant

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: KCTC 3421

ncbi_submitter: Korea University


ncbi_country: USA: Maryland

ncbi_isolation_source: peri-anal swab culture

ncbi_organism_name: Klebsiella oxytoca 11492-1

ncbi_submitter: Institute for Genome Science


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: feed

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Amycolatopsis thermoflava

ncbi_submitter: BGI Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Caldilineaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Mediannikovella massiliensis

ncbi_organism_name: Clostridiales bacterium mt11

ncbi_submitter: URMITE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Asturias

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: France

ncbi_isolation_source: sourdough

ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: LBAE G23

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine Cath

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0307

ncbi_submitter: Texas A&M University


ncbi_country: China: Qingdao

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aminipila sp.


ncbi_organism_name: Alistipes communis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: natural mineral water

ncbi_organism_name: Rhizobium sp. CECT 9324

ncbi_submitter: University of Valencia, Spain


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Heibei; Baoding

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: sea water

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Germany: Lake Stechlin

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single-cell amplified by MDA; cell type filament from freshwater

ncbi_organism_name: Dolichospermum sp. ST_con

ncbi_submitter: CSIRO


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Stenotrophomonas bentonitica


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Candidatus Edwardsbacteria bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Edwardsiibacteriota;x__unclassified Candidatus Edwardsbacteria;s__Candidatus Edwardsbacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: USA

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Colon

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Ghana

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Tokyo Medical and Dental University


ncbi_assembly_name: IMG-taxon 2651870102 annotated assembly

ncbi_organism_name: Paraburkholderia sartisoli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F26088

ncbi_submitter: Broad Institute


ncbi_assembly_name: Salmonella enterica CVM 43757 v1.0

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Streptococcus pneumoniae GA04375

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 18 days

ncbi_organism_name: bacterium

ncbi_submitter: Shantou University


ncbi_isolate: AOP18_B2_surf _bin _2

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP18_B2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_country: Denmark: Aarhus Bay

ncbi_isolation_source: Marine sediment (0.45 mbsf) from Aarhus Bay site M5

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of Florida


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfatator sp.

ncbi_submitter: Portland State University


ncbi_country: France

ncbi_isolation_source: treacle (rhumerie)

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIRM-BIA 2151

ncbi_submitter: Brigham Young University


ncbi_country: China

ncbi_isolation_source: wastewater of coal dump

ncbi_organism_name: Acidithiobacillus thiooxidans A01

ncbi_submitter: Central South University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Queen Mary University of London


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Korea Research Institue of Bioscience a


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acidihalobacter sp.

ncbi_submitter: Georgia Tech


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Birmingham

ncbi_isolation_source: laboratory strain derivated from Mycobacterium marinum 1218R

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: University of Birmingham


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- T7-022_bin-369

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: China: Haixi City; Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Nocardioides houyundeii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: South Korea

ncbi_isolation_source: Raw milk

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Ruminococcus bromii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Israel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ariel University


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: Karolinska Insitutet


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_organism_name: Paludisphaera sp.

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Burkholderia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Salmonella sp. BAS-1

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: University of Parma


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0496

ncbi_submitter: Broad Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Northwestern University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Greece: Epirus

ncbi_isolation_source: cheese whey

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Hospital Vall d Hebron (Barcelona)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia sp. JGI 0001001-C06

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces werraensis

ncbi_submitter: Agricultural Reasearch Council


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany

ncbi_isolation_source: tongue swab

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: child feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: China: Yangzhou

ncbi_isolation_source: pork from retail market

ncbi_organism_name: Escherichia sp. M623

ncbi_submitter: YangZhou university


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Roseburg

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: South Africa: Northern Cape Province

ncbi_isolation_source: Ear tissue

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Turkey

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG14652

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_country: China: Changsha

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: China: Zhengzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Spain: Galicia

ncbi_isolation_source: fish farm

ncbi_organism_name: Photobacterium damselae subsp. piscicida

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 27

ncbi_submitter: USDA-ARS


ncbi_country: USA

ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Japan:Kagami River

ncbi_isolation_source: gill for ayu fish

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Kochi University


ncbi_country: China: Zhejiang

ncbi_isolation_source: fecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseibacillus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardioides cavernae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Escherichia coli JCM 18426

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut

ncbi_organism_name: Brevibacillus massiliensis


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-0551

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: Fermented cherry juice

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: China Agricultural University


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus sp. C3(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C3(2022)


ncbi_country: USA: Michigan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Mexico:Jalisco farm

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: BUAP-UNAM-CINVESTAV


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gemmatales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: CQCDC


ncbi_organism_name: Sporosarcina koreensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-2366

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Dalhousie University


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. NPDC058283

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Alistipes ihumii


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K6-183

ncbi_submitter: Institute of Marine research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Rothia sp.


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: mouse gut metagenome


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12247

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium GW2011_GWC2_44_30


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Rio Grande under the bridge between Brownsville; TX and Matamoros; Mexico.

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Peking University


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 4956


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China-Japan friendship hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptomyces lunalinharesii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Prochlorococcus marinus str. AS9601

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Paraburkholderia sp. GAS348

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: coocked quail egg

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Spain: Madrid

ncbi_isolation_source: urine

ncbi_submitter: Hospital Universitario Virgen Macarena


ncbi_country: Chile: Penas Gulf

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. G11C

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Terrimonas sp.

ncbi_submitter: GNS Science


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Nonomuraea sp. NPDC048882

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Western Australia; Albany

ncbi_organism_name: Bradyrhizobium sp. WSM471

ncbi_submitter: Murdoch University


ncbi_organism_name: Acinetobacter baumannii 45052_2

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces canus


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: The University of Texas at Dallas


ncbi_country: China: Wuhan; Hubei Province

ncbi_organism_name: Thermoactinomyces vulgaris

ncbi_strain_identifiers: CDF

ncbi_submitter: Wuhan University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium CG_4_10_14_0_2_um_filter_37_12


ncbi_country: USA: Ohio

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Flavobacterium aquatile

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Oceanobacillus polygoni


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: National Pingtung University of Science and Technology


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Woykebacteria bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woykeibacteriota;x__unclassified Candidatus Woykebacteria;s__Candidatus Woykebacteria bacterium


ncbi_country: Russia: Saint Petersburg

ncbi_isolation_source: fresh carrot

ncbi_organism_name: Yersinia frederiksenii

ncbi_strain_identifiers: 1366 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Methylobacterium sp. NFXW15

ncbi_submitter: iBET


ncbi_country: China

ncbi_isolation_source: Pus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sputum induced

ncbi_organism_name: Lactobacillus sp. HMSC068F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Sichuan

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Aneurinibacillus danicus

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Amycolatopsis sp. NPDC051371

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12216

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_submitter: USDA


ncbi_assembly_name: Rumen uncultured genome RUG10772

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: CCUG 17913 T

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Gwen

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Kitasatospora griseola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: bacterium D16-50


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Chloracidobacterium sp.


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: Xiamen University


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_organism_name: Rugosibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Micromonospora sp. CA-249363

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Pleurocapsa sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_isolate: leaves of Talipariti tiliaceum

ncbi_organism_name: Streptomyces cadmiisoli

ncbi_strain_identifiers: bgisy041;leaves of Talipariti tiliaceum

ncbi_submitter: BGI Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Xanthobacter tagetidis

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Yangzhou University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Dilute Hydrothermal Plume

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Hydrothermal Plume

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8506

ncbi_submitter: University of Exeter


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: London

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: NCTC 7292

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: South Korea

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. SID7834


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Australia: Hobart

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: GDMCC 1.22

ncbi_submitter: Guangdong Academy of Sciences


ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: Netherlands

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 299


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangdong Province

ncbi_isolation_source: water from subtropical river stream

ncbi_organism_name: Undibacterium umbellatum

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_submitter: Chinese National HGC, Shanghai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. 8004


ncbi_country: Japan

ncbi_isolation_source: Fine bubble water stocked at 4 degrees C for 12 days.

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Nigeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Thailand: Pattani

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: AAFC


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA5232


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sporolactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium sp. LA7.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Azotobacter chroococcum

ncbi_strain_identifiers: NCAIM B.01391

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0996

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Rumen uncultured genome RUG10365

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 319

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 5474

ncbi_submitter: University of Calgary


ncbi_country: China: Guangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: V02 for genome sequence of BCB013

ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus bv. 1 str. BCB013

ncbi_submitter: Beijing Institute of Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. BCB013


ncbi_assembly_name: Rumen uncultured genome RUG11659

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: Austria

ncbi_isolation_source: joint

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_country: Italy: Ionian Sea

ncbi_isolation_source: Ionian sea from 3500 m depth

ncbi_organism_name: SAR202 cluster bacterium Io17-Chloro-G5

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium Io17-Chloro-G5


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: China: Shandong

ncbi_isolation_source: bark

ncbi_organism_name: Pseudoclavibacter sp. CFCC 13611

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_name: Rumen uncultured genome RUG14592

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: addis ababa university


ncbi_country: South Africa:Welkom

ncbi_isolation_source: water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium UBA2593


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: desert soil

ncbi_organism_name: Sphingomonas arenae

ncbi_strain_identifiers: SYSU D00720

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Listeria monocytogenes J2818

ncbi_submitter: Broad Institute


ncbi_country: Chile: Atacama Desert; Alto Andino

ncbi_isolation_source: soil

ncbi_organism_name: Halomonas sp. ALS9

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Agathobacter sp.


ncbi_isolation_source: fig leaf

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Hiroshima University


ncbi_assembly_name: IMG-taxon 2684622999 annotated assembly

ncbi_organism_name: Bacillus sp. OV194

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OV194


ncbi_organism_name: Clostridium perfringens


ncbi_assembly_name: 95014 de novo assembly

ncbi_organism_name: Bacillus anthracis str. 95014

ncbi_submitter: Army Medical and Veterinary Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. 95014


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG10125

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: France: Rennes

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universitas Pelita Harapan


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Methyloversatilis sp.


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Streptacidiphilus cavernicola

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Phytohabitans kaempferiae

ncbi_strain_identifiers: TBRC 3947

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Microbulbifer halophilus


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Tannerellaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Hydrothermal vent sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Spain: Galicia

ncbi_isolation_source: female 63 year old colorectal cancer patient 79 colon adenocarcinoma

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Chicago


ncbi_isolation_source: Clinical; neck abscess

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China

ncbi_isolation_source: water sample from river in Wudalianchi volcano

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: Heilongjiang Bayi Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_assembly_name: Rumen uncultured genome RUG10503

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Hunan; Changde; Shimen

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_assembly_name: freshwater MAG --- MJ120620B_bin-655

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_country: Pakistan: Hyderabad

ncbi_organism_name: Streptomyces sp. WAC 05977

ncbi_submitter: McMaster University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter suis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudofrancisella aestuarii

ncbi_strain_identifiers: SYSU WZ-2

ncbi_submitter: Traditional Chinese Medicine University of Guangzhou


ncbi_country: China: Hunan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Evtepia faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia faecigallinarum


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas sp. MYb3

ncbi_submitter: Zoological Institute, Kiel University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: Salmonella enterica CVM N43473 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: SWINE INTESTINE

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Technische Universiteit Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Nanjing Institute for Food and Drug Control


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter mehlei

ncbi_submitter: Institute of Microbiology and Parasitology VF UL, Slovenia


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: India

ncbi_isolation_source: feces


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10601

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA2963

ncbi_submitter: University of Queensland


ncbi_country: Argentina: Cordoba

ncbi_isolation_source: placenta

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis bv. intermedius;x__Campylobacter fetus subsp. venerealis cfvi92/203


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Morocco: Rabat

ncbi_isolation_source: sputum culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudoflavonifractor sp. An184


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13154


ncbi_organism_name: Streptomyces sp. NBC_00335

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: Algeria: M sila

ncbi_isolation_source: Nose

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Universiteit Gent