ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: China:Inner Mongolia

ncbi_genome_representation: full

ncbi_isolation_source: Intestines of healthy infants in China

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Sunflower Pharmaceutical Group Co., Ltd


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_organism_name: Streptobacillus moniliformis DSM 12112

ncbi_refseq_category: reference genome

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces bauhiniae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Yakutsk

ncbi_isolation_source: paleontological specimen from permafrost soil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: China: Ningbo

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Photorhabdus laumondii subsp. clarkei


ncbi_assembly_level: Chromosome

ncbi_country: Canada: British Columbia

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20111554


ncbi_country: Turkey: Diyarbakir; Cermik

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Switzerland

ncbi_isolation_source: Human feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Mesorhizobium sp. M0254

ncbi_submitter: Washington State University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_organism_name: Spongiibacter tropicus

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Brevundimonas olei

ncbi_submitter: Tarim University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. C3193

ncbi_submitter: Sichuan University


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University


ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: Proteus sp. DFP240708

ncbi_submitter: Shenzhen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. DFP240708


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Water sample from NSHQ14 Well

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.83 MAG

ncbi_organism_name: Eubacteriaceae bacterium CHKCI004

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.83 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Methylophilus sp.


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Nisaea sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Anhui Medical University; Beijing Institute of Microbiology and Epidemiology


ncbi_strain_identifiers: BGSC 4BV1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar argentinensis


ncbi_organism_name: Candidatus Fimimonas gallinarum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: ICS

ncbi_submitter: University of the Philippines Diliman


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Vellore

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: christian Medical College


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Candidatus Scalindua sediminis

ncbi_submitter: Tsinghua University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua sediminis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua sediminis


ncbi_country: Netherlands

ncbi_isolation_source: Soil and grass

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Croatia

ncbi_isolation_source: olive knot

ncbi_organism_name: Pantoea sp. paga

ncbi_strain_identifiers: paga

ncbi_submitter: UMR5557 Laboratoire d'Ecologie Microbienne


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan:Shiga; Otsu; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_submitter: ITACYL


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: Human lung tissue

ncbi_organism_name: Legionella cincinnatiensis

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Actinoplanes lobatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Teramo

ncbi_isolation_source: feces

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: Bangladesh: Kuakata

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Water

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paracoccus marcusii

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC086766

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW456-L15

ncbi_submitter: Arkin Lab


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: SCOPE


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0973

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Canada: Lacombe

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany

ncbi_isolation_source: Wound swab foot

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SurvCARE


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli DEC3A

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter sp. BIGb0359

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paraprevotella sp.


ncbi_country: Sudan

ncbi_isolation_source: Mycetoma Lesion

ncbi_organism_name: Streptomyces radiopugnans

ncbi_submitter: Newcastle University


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Takoradi


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Bordetella bronchiseptica B18-5 (C3)

ncbi_submitter: JCVI


ncbi_isolation_source: Bulk Milk Tank

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: National Institute of Health, Portugal


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Escherichia coli KLY

ncbi_strain_identifiers: KLY

ncbi_submitter: Hebrew University - Balaban's Lab


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Comenius University Science Park


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: University of Milan


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Salmonella sp. NW1178

ncbi_submitter: Sichuan University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Institute of Biotechnology


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas sp. CAN1

ncbi_strain_identifiers: SPPC 2814

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Iowa


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6496

ncbi_submitter: Ministry of Science and Technology of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aurantimonas sp. C2-4-R8

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Brazil

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. anacardii

ncbi_submitter: CAPES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. anacardii


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Hungary: Csokm; Fuzesgyarmat

ncbi_isolation_source: Submaxillary lymph node

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: intestinal content

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: ChinaCDC


ncbi_isolation_source: marine

ncbi_organism_name: Vibrio sp. L5-1

ncbi_submitter: shandong university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Jiangsu

ncbi_isolation_source: Genital tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Pittsburgh


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Japan

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: bronchoalveolar lavage


ncbi_organism_name: Promicromonospora sp. NPDC060204

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0076

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Latilactobacillus;s__Latilactobacillus sakei;sb__Latilactobacillus sakei subsp. sakei;x__Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: tap water

ncbi_organism_name: Candidatus Raskinella chloraquaticus

ncbi_submitter: University of Queensland


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptomyces sp. NPDC006458


ncbi_genome_category: derived from single cell

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10991

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01331

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01331


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: China

ncbi_isolation_source: environment

ncbi_organism_name: Vibrio parahaemolyticus S168

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S168


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Germany: Ulm

ncbi_isolation_source: oxic soil sample

ncbi_organism_name: Aromatoleum buckelii

ncbi_submitter: The James Hutton Institute


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Radboud University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Italy

ncbi_isolation_source: vegetables

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- KR_bin-2149

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Squaxin Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: University of Washington-Seattle


ncbi_country: China: Quanzhou; Fujian

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: Huaqiao University


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: clinical sample

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: South Korea: East Sea

ncbi_isolation_source: sea

ncbi_organism_name: Planococcus donghaensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Clostridium cochlearium

ncbi_submitter: University of Chicago


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Zeaxanthinibacter sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Anaerostipes caccae

ncbi_strain_identifiers: LAHUC


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC017676

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Candidatus Caenarcanales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;c__Vampirovibriophyceae;o__Candidatus Caenarcanales;x__unclassified Candidatus Caenarcanales;s__Candidatus Caenarcanales bacterium


ncbi_genome_representation: partial

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Micromonospora palomenae

ncbi_submitter: Northwest Minzu University


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallis sp.


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: USFDA


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: IMG-taxon 2721755925 annotated assembly

ncbi_organism_name: Salinimicrobium sediminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: New Zealand: Auckland Combined

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium sp. Leaf391

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_assembly_name: IMG-taxon 2675903691 annotated assembly

ncbi_organism_name: Planctomicrobium piriforme


ncbi_country: USA: UT

ncbi_isolation_source: stool (infant)

ncbi_organism_name: Clostridium botulinum CDC_1436

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: acidified beer wort

ncbi_organism_name: Lactobacillus amylolyticus

ncbi_submitter: Korea University


ncbi_country: China: Beijing

ncbi_submitter: National institutes of Food and Drug Control


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China

ncbi_isolation_source: saline lake water

ncbi_organism_name: Roseovarius nitratireducens

ncbi_strain_identifiers: TFZ

ncbi_submitter: Zhejiang University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Rhodovibrionaceae bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri


ncbi_country: South Korea:Jeonju

ncbi_isolation_source: stream sediment

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Chonbuk National Univerity


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Eubacteriaceae bacterium UBA6119

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: New York City

ncbi_isolation_source: human blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Mount Sinai School of Medicine


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Australia

ncbi_organism_name: Streptomyces sp. EN27

ncbi_submitter: i3S, University of Porto


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_submitter: University of Guelph


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Minnesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lundquist Institute


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA

ncbi_isolation_source: gut (caecum)

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: North Carolina State University


ncbi_organism_name: Streptomyces sp. NPDC101132

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Ileon biopsy

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Lachnospiraceae bacterium P6B14

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: soil

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Grand View University


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Austria:Vienna; General Hospital Vienna

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: AIT


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Gers

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Anses


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-K16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Germany: Altingen; artesian well

ncbi_isolation_source: enrichment culture sampled from a low-nitrate anoxic artesian well

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: University of Tuebingen


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_organism_name: Streptomyces bullii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0339R

ncbi_submitter: Broad Institute


ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Comenius University Science Park


ncbi_country: China: Beihai

ncbi_isolation_source: aquaculture ponds

ncbi_organism_name: Vibrio sinaloensis

ncbi_submitter: Fourth Institute of Oceanography Ministry of Natural Resources


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W21932


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Anaerobutyricum sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_country: USA: Texas

ncbi_organism_name: Sphingomonas kyeonggiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom

ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: NCPPB 2345

ncbi_submitter: University of Exeter


ncbi_organism_name: Rickettsia endosymbiont of Nabis limbatus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Ocean University of China


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thiohalomonas denitrificans

ncbi_submitter: University Duisburg-Essen


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: Tomato roots

ncbi_organism_name: Delftia sp. HK171

ncbi_submitter: Korea Research Institute of Chemical Technology


ncbi_country: United Kingdom:Aberdeen

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Chr-Hansen


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: Ganga River

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea: Lake Soyang

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinobacteria bacterium IMCC25003

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium IMCC25003


ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Gansu Agricultural University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. SAL4362

ncbi_submitter: Zhejiang university


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9590

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-13059

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_country: China: Beijing

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Citrobacter sp. RHBSTW-00424

ncbi_submitter: The REHAB Consortium


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: Nebraska

ncbi_isolation_source: feces

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_organism_name: Candidatus Sedimenticola endophacoides

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Bacillus mycoides


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Spain

ncbi_isolation_source: olive fermentation

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2169

ncbi_submitter: Brigham Young University


ncbi_organism_name: Zhenhengia yiwuensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_4 WWTPs effluent

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Cyanobacterium sp. uoEpiScrs1

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Teredinibacter turnerae T8513

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3821

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: GA; Skidaway Island

ncbi_isolation_source: salt marsh sediment

ncbi_organism_name: Shewanella algae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola coprocola


ncbi_country: USA: Puerto Rico

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Aeromonas sp. R9-1

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_strain_identifiers: ICMP 8740

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA: Lake Tohopekaliga; Florida

ncbi_isolation_source: Mesotrophic lake

ncbi_organism_name: Microcystis aeruginosa BLCC-F158

ncbi_submitter: University of Florida


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Candidatus Palauibacter scopulicola

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter scopulicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter scopulicola


ncbi_country: South Korea: Yeosu

ncbi_isolation_source: seaweed samples

ncbi_organism_name: Cellulophaga omnivescoria

ncbi_submitter: ChunLab


ncbi_country: India:Cochin; Munambam Fishing Harbour

ncbi_isolation_source: anchovy

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14015

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Key Laboratory of Agricultural Biodiversity for Plant Disease Management under the Ministry of Education


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Minnesota


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Veillonella parvula


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Suranaree University of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_organism_name: Bifidobacteriaceae bacterium


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas sp. W5-36

ncbi_submitter: Institut de recherche Labiris


ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Southwest Medical University


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Sphingomonadaceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Lund University


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Ruminococcus sp. CAG:579


ncbi_country: Argentina: Buenos Aires; Balcarce

ncbi_isolation_source: tissue samples

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Arthrobacter sp. BE255

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France: La Tremblade; Nouvelle-Aquitaine

ncbi_isolation_source: spat

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Caldicellulosiruptor bescii


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus australis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_isolation_source: Oral Swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1571

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: Iceland: Geysir Springs

ncbi_isolation_source: hot spring

ncbi_organism_name: Fischerella muscicola CCMEE 5323

ncbi_strain_identifiers: CCMEE 5323

ncbi_submitter: University of Montana


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Goias

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Aphodousia gallistercoris

ncbi_submitter: Quadram Institutte


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-215

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_country: Switzerland

ncbi_isolation_source: lamb

ncbi_organism_name: Clostridium algidicarnis

ncbi_submitter: University of Zurich


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Actinomycetospora soli

ncbi_submitter: Kasetsart University


ncbi_organism_name: Anabaena sp. CA = ATCC 33047

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;x__unclassified Anabaena;s__Anabaena sp. CA = ATCC 33047


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus aerophilus

ncbi_submitter: Instituto Gulbenkian de Ciencia


ncbi_country: Estonia: Tartu

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterococcaceae bacterium UBA5027

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Rhizobium sp. BK226

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Proteiniphilum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Stanford University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Kitasatospora sp. NPDC059571

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Strasbourg

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: beach sand

ncbi_organism_name: Acrocarpospora corrugata

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_22


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw;x__Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides fluxus YIT 12057

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fluxus;x__Bacteroides fluxus YIT 12057


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: China: Heyuan

ncbi_isolation_source: Psittacus erithacus feces

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CO-85


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Canada: Alberta

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ130729A_bin-409

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SAL04275

ncbi_submitter: Zhejiang university


ncbi_organism_name: Arthrobacter subterraneus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alcaligenes nematophilus

ncbi_strain_identifiers: BZR 762

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_organism_name: Nocardia sp. NPDC058379


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Pseudomonas sp. DC479

ncbi_submitter: University of Florida


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Landesbetrieb Hessisches Landeslabor (LHL)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Microscillaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_isolation_source: rumen

ncbi_organism_name: Solobacterium sp. UBA2823

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus sp. DIV0800

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_assembly_name: IMG-taxon 2623620473 annotated assembly

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Taiwan: Shi-Huang-Ping hot spring

ncbi_isolation_source: acidic hot spring


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDX8P113P-1

ncbi_submitter: South China Agricultural University


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA79


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Sphingomonas sanxanigenens

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Thiobacillus sp. UBA2487


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: UNIVERSITI PUTRA MALAYSIA


ncbi_isolation_source: stomach

ncbi_organism_name: Saccharibacter sp. M18

ncbi_submitter: NARIC


ncbi_country: Venezuela: Caracas

ncbi_isolation_source: urine

ncbi_submitter: Universidad El Bosque


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Australia: Port Phillip Bay; Heron Island and Pacific Ocean; Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPLOWO2_02_FULL_43_22


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Kurthia zopfii

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Lebanon

ncbi_isolation_source: catheter

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-245

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bryobacterales bacterium

ncbi_strain_identifiers: new MAG-245

ncbi_submitter: Micoorganism


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: China:Zhejiang Province

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Alachua


ncbi_country: USA: Hawaii

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Lautropia mirabilis

ncbi_submitter: EMG


ncbi_country: Ecuador


ncbi_country: Viet Nam: Thai Binh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1515S

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: Ibaraki University College of Agriculture


ncbi_organism_name: Pseudonocardia hydrocarbonoxydans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil

ncbi_isolation_source: Secretion

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_assembly_name: Rumen uncultured genome RUG456

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: FMY

ncbi_country: Germany: Lusitana

ncbi_isolation_source: acid mine drainage

ncbi_organism_name: Ferrovum sp. JA12

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: Uruguay

ncbi_organism_name: Campylobacter fetus subsp. fetus

ncbi_submitter: Institut Pasteur Montevideo


ncbi_isolation_source: Blood


ncbi_country: Italy

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_submitter: University of Pavia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Lithuania

ncbi_isolation_source: Fermented vegetables

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Vilnius University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Singapore

ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Stenotrophomonas sp. Betaine-02u-23

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: China: Beijing

ncbi_isolation_source: Biofilms

ncbi_organism_name: Diaphorobacter nitroreducens

ncbi_submitter: Beijing Agro-Biotechnology Research Center

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xenorhabdus siamensis

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: human saliva metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11619

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Shigella boydii

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Germany

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: USA: Seattle; Washington

ncbi_isolation_source: throat

ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Escherichia sp. WS2932

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Pasteurella sp. PK-2025

ncbi_strain_identifiers: RT1han1T (DSM 118579T)

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonas sp. CJQ_2

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Streptomyces sp. NPDC091406

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_submitter: Teesside University


ncbi_organism_name: uncultured Cellvibrionaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Fujian; Zijin


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Nakamurella sp. A5-74

ncbi_submitter: Dalian Minzu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Prescottella equi

ncbi_submitter: Animal Hygiene, Kitasato University School of Veterinary Medicine


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: postoperative incision

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: addis ababa university


ncbi_country: Canada: Toronto

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA: NM

ncbi_isolation_source: chicken breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM N23791


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Huzhou

ncbi_isolation_source: food

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesorhizobium japonicum MAFF 303099

ncbi_submitter: Kazusa


ncbi_organism_name: Streptococcus pyogenes ABC020056894

ncbi_submitter: Broad Institute


ncbi_country: Turkey

ncbi_organism_name: Rathayibacter iranicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Gar RS 6

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: China: Dali; Yunnan Province

ncbi_organism_name: Streptomyces sp. CB00072

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H44015


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp. AF19-14

ncbi_submitter: BGI


ncbi_country: Belgium

ncbi_submitter: University of Liege


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NCIMB 8209

ncbi_submitter: BMSSI, CNRS UMR5086, Universite Lyon


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.


ncbi_country: USA: PS

ncbi_isolation_source: chicken

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Luteibacter sp.

ncbi_submitter: University of Sao Paulo