ncbi_isolation_source: Gallbladder

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of medecine and pharmacy RABAT


ncbi_country: Reunion

ncbi_isolation_source: sugarcane plant

ncbi_organism_name: Xanthomonas axonopodis pv. vasculorum

ncbi_strain_identifiers: NCPPB 900

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.3;x__Xanthomonas axonopodis pv. vasculorum


ncbi_country: USA

ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1835


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Queensland; Lake Wivenhoe

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii S14

ncbi_submitter: Griffith University


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


gtdb_representative: t

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. Ks42

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Secundilactobacillus paracollinoides

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hainan Medical University


ncbi_organism_name: Salmonella sp. NW492

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Wallacebacter cryptica

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Wallacebacteriaceae;g__Candidatus Wallacebacter;s__Candidatus Wallacebacter cryptica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Wallacebacteriaceae;g__Candidatus Wallacebacter;s__Candidatus Wallacebacter cryptica


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Hellea sp.


ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-0965

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_genome_category: derived from single cell

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Global Oceans Reference Genomes (GORG)-Dark

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Roseburia faecis


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Noviherbaspirillum sp. UKPF54

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: University of Galway


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Indonesia: Batu Karas; Pangandaran

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Microbulbifer elongatus

ncbi_submitter: Universitas Padjadjaran


ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_country: China: South China Sea

ncbi_isolation_source: Sediments

ncbi_organism_name: Bacillus sp. L27

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. L27


ncbi_country: China

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_submitter: University of Florida


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Candidatus Onthocola stercorigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Onthocola;s__Candidatus Onthocola stercorigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthocola;s__Candidatus Onthocola stercorigallinarum


ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Jilin

ncbi_organism_name: Acinetobacter genomosp. 33YU

ncbi_submitter: Sir Run Run Shaw hospital, School of Medicine, Zhejiang University


ncbi_country: United Kingdom:Berkshire

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Hubei; Wuxue

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: WX

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Jiangxi

ncbi_organism_name: Bacillus sp. FJAT-21351

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-21351


ncbi_assembly_name: Rumen uncultured genome RUG14896

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: candidate division TA06 bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division TA06;s__candidate division TA06 bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_isolation_source: Midstream urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: Lebanon: Byblos

ncbi_isolation_source: Gastrointestinal

ncbi_organism_name: Escherichia coli LAU-EC5

ncbi_submitter: Lebanese American University


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED01

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED01


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: USA

ncbi_isolation_source: fecal sample

ncbi_organism_name: Brachyspira hampsonii

ncbi_submitter: University of Minnesota

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: British Columbia; Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: McGill University and Genome Quebec Innovation Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Ligilactobacillus salivarius UCC118

ncbi_submitter: University College Cork


ncbi_country: China: Shanghai

ncbi_submitter: Monash Unversity


ncbi_country: Colombia: Bolivar

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1319

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus cereus


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acinetobacter radioresistens TG02010

ncbi_submitter: Translational Genomics Research Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01430

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01430


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Acinetobacter sp. RIT698

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Environmental (tomato plant)

ncbi_organism_name: Pseudomonas aeruginosa E2


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Baltic Sea: North Sea

ncbi_organism_name: Micrococcus sp. KT16

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: NY

ncbi_isolation_source: heat treated 2% fat milk

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Norfolk State University


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Haliea sp.

ncbi_submitter: EPFL


ncbi_country: China: Wenzhou

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: Minnesota

ncbi_isolation_source: urine

ncbi_submitter: University of Minnesota


ncbi_country: China: East Lake; Wuhan; Hubei

ncbi_isolation_source: water samples

ncbi_organism_name: Aeromonas media WS

ncbi_strain_identifiers: WS

ncbi_submitter: College of Life Science, Wuhan University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Santander

ncbi_isolation_source: animal feed; raw chicken carcass at slaughterhouse

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_organism_name: Burkholderia sp. SRS-46

ncbi_submitter: Florida A&M University


ncbi_country: USA: Virginia

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Escherichia sp. WS1152

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC058653

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP42_E1_surf _bin _1

ncbi_organism_name: Sphingobacterium sp.

ncbi_strain_identifiers: AOP42_E1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Tokyo Medical and Dental University


ncbi_strain_identifiers: K15 autumn

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalomonas;s__Candidatus Scybalomonas excrementigallinarum


ncbi_country: USA: Blacksberg; Virginia

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Prevotella nigrescens

ncbi_refseq_category: reference genome

ncbi_submitter: The Forsyth Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Christian Medical College


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Reunion

ncbi_isolation_source: Citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroides finegoldii


ncbi_country: Tanzania: Zanzibar

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli 96.0939

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3068

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: New Zealand

ncbi_submitter: Massey University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_country: Japan: Nakoso; Iwaki

ncbi_isolation_source: soil

ncbi_organism_name: Saccharothrix sp. ST-888

ncbi_submitter: University of Illinois


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: offshore Texas

ncbi_isolation_source: filtered produced water from oil reservoir A2

ncbi_organism_name: Candidatus Petromonas tenebris

ncbi_submitter: University of Delaware


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Parma


ncbi_country: USA: San Francisco; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacterium obuense

ncbi_submitter: UCSF


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnospiraceae bacterium AC3007

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: burned soil

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Kuwait

ncbi_isolation_source: soil in the Ahmadi oil field

ncbi_organism_name: Nocardia coubleae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_submitter: Anhui Medical University


ncbi_country: Egypt

ncbi_isolation_source: Desert soil

ncbi_organism_name: Streptomyces sp. DH5

ncbi_submitter: Ain Shams University


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: shanghai ocean university


ncbi_country: Switzerland: Bern

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_organism_name: Gluconobacter sp. P1D12_c

ncbi_submitter: Freiburg University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_isolation_source: excreted bodily substance

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Turkey

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: branches

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: shihezi university


ncbi_country: Turkey: Mardin; Midyat

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Indian Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. GAB2316C

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Sneathia sanguinegens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Sichuan University


ncbi_country: China: zhengzhou

ncbi_isolation_source: urine

ncbi_organism_name: Providencia sp. PROV061

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Minnesota


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacteraceae bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: Fermented vegetables

ncbi_organism_name: Weissella hellenica

ncbi_submitter: Jiangsu University


ncbi_organism_name: Laceyella putida

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: instituto de investigaciones biologicas clemente estable


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Brucellaceae bacterium

ncbi_submitter: The University of Hong Kong


gtdb_type_species_of_genus: t

ncbi_organism_name: Kurthia zopfii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy

ncbi_isolation_source: Kidney Stone

ncbi_organism_name: Brucella melitensis

ncbi_submitter: McMaster University


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: Limosilactobacillus fermentum


ncbi_organism_name: Thermohalobaculum sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Sakha Republik; Ust-Yanskiy district; Syalach

ncbi_isolation_source: mummified remains of an ancient  Tumat  puppy

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: tumat

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lishui Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_country: USA: Los Angeles

ncbi_isolation_source: in vitro oral biofilm

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-102

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_assembly_name: Rumen uncultured genome RUG14187

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: JiLin Agricultural Scuence and Technolog


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dickeya ananatis

ncbi_submitter: University of Hawaii


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Sphingosinicella sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: bacterium


ncbi_country: Portugal: Lisbon

ncbi_organism_name: Microcoleus asticus IPMA8

ncbi_submitter: Instituto Gulbenkian Ciencia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kitasatospora sp. NPDC002227

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Massilibacillus sp.

ncbi_submitter: Colorado State University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium TMED93

ncbi_submitter: University of Southern California


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: University of Lausanne


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: EMG


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M116S2

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Oligosphaeraceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris


ncbi_country: China: Tengchong county; Yunnan; QQ

ncbi_isolation_source: Hot spring sediment

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Calidihabitans;s__Candidatus Calidihabitans tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Calidihabitans;s__Candidatus Calidihabitans tengchongensis


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: NC; Beaufort

ncbi_isolation_source: coastal marine water

ncbi_organism_name: Vibrio sp. PID17_43

ncbi_submitter: Duke University


ncbi_organism_name: Thermoanaerobacterales bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Cellulomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: bulk soil from Grassland

ncbi_organism_name: Pseudomonas sp. GL-B-12

ncbi_submitter: Rothamsted Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Thailand

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Faculty of Science, Chulalongkorn University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Mammaliicoccus fleurettii

ncbi_submitter: University of Siena


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Microbiology, Faculty of Science, Gombe State University, Tudun Wada, Gombe, Gombe Sta


ncbi_country: China: SiChuan

ncbi_isolation_source: blood

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: The Ohio State University


ncbi_organism_name: Thioalkalivibrio sp. ALD1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA1006

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1006


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillibacter valericigenes

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: China: Fujian

ncbi_isolation_source: Copper Mine

ncbi_organism_name: Sulfobacillus thermosulfidooxidans

ncbi_strain_identifiers: ZJ

ncbi_submitter: Central South University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus thermosulfidooxidans


ncbi_country: China: Guangxi

ncbi_isolation_source: tonsil scrape

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_02_FULL_39_8


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_country: Azerbaijan

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Methylobacterium sp. SuP10 SLI 274

ncbi_strain_identifiers: SuP10 SLI 274


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA5718


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. ME02-6987-2C

ncbi_submitter: Oregon State University


ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae Ecl8


ncbi_assembly_name: Paenalcaligenes sp. strain NGK35 draft genome

ncbi_isolate: isolate NGK35

ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Paenalcaligenes sp.

ncbi_strain_identifiers: isolate NGK35

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Singapore

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: Universidad de Concepcion


ncbi_isolate: AOP40_10SA_surf _bin _25

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP40_10SA_surf _bin _25

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: DE

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Mycobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Catenibacterium sp.


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: isolate obtained from ATCC:7955 NCA 3679 produced in 1990

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Sichuang

ncbi_isolation_source: environmental swab

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Japan

ncbi_isolation_source: Human feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Canada: Ontario

ncbi_submitter: University of Toronto


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: soil; sucrose refining factory

ncbi_organism_name: Microbacterium saccharophilum

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_country: Tanzania: SINGIDA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Puia sp.


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Pau University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: groundwater

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_country: Thailand: Phetchabul

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: environment

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CRC RESIST


ncbi_organism_name: Vreelandella sulfidaeris

ncbi_strain_identifiers: ATCC BAA-803

ncbi_submitter: Keio University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: uncultured Marinifilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolate: S52 bin 4

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S52 bin 4

ncbi_submitter: Duke University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Georgia

ncbi_isolation_source: Ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_submitter: University of Queensland


ncbi_organism_name: Serratia plymuthica RVH1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Poland: Radom

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_country: Papua New Guinea


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: uncultured Enterococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Rio de Janeiro; UFRJ

ncbi_isolation_source: oropharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Fiocruz


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus sp. 7788

ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 7788


ncbi_country: France

ncbi_organism_name: Pseudomonas viridiflava ICMP 13104

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas viridiflava;x__Pseudomonas viridiflava ICMP 13104


ncbi_organism_name: Candidatus Mailhella merdigallinarum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: aspirate

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: swine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_country: Poland

ncbi_isolation_source: trachea

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_isolation_source: anoxic soil

ncbi_organism_name: Terrimicrobium sacchariphilum

ncbi_submitter: Terrimicrobium sacchariphilum NM-5


ncbi_assembly_name: Rumen uncultured genome RUG006

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nocardioides kribbensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: surface swab

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWF2_39_13


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Tropheryma whipplei str. Pneumo30

ncbi_submitter: ebi


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Bologna

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: USA: Tornillo Flat; TX

ncbi_organism_name: Mesoplasma coleopterae

ncbi_strain_identifiers: BARC 779

ncbi_submitter: Academia Sinica


ncbi_country: Switzerland: Bern

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: China: Zibo

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium sp. V4

ncbi_submitter: Shandong University of Technology


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3549

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Brevinematia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: Lysobacter sp. GCM10012299

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Italy

ncbi_isolation_source: swine sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Salmonella sp. SC24

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Methyloversatilis sp.


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Denmark: North Greenland; Brnlundhus; Peary land

ncbi_isolate: PEA bin13

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: PEA bin13

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: South Korea

ncbi_isolation_source: chicken meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_country: Viet Nam

ncbi_isolation_source: Not known


ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_assembly_name: Necropsobacter rosorum

ncbi_organism_name: Necropsobacter rosorum

ncbi_submitter: URMITE


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Desulfurellales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Ireland

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Euzebyales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m2-12

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m2-12


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M13074

ncbi_submitter: Broad Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Candidatus Ruthia sp. UBA5978

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthia sp. UBA5978


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TRS25

ncbi_submitter: Vanderbilt University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 207

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 1928

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_isolation_source: Caecum

ncbi_organism_name: Eubacterium plexicaudatum


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Prochlorococcus sp. MED-G72

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Comamonas kerstersii


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: groundwater

ncbi_organism_name: Arenimonas sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_country: Germany

ncbi_isolation_source: phyllosphere of grasses

ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: Iran

ncbi_isolation_source: vaccine

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan:Tokyo; Ohyato Park

ncbi_isolation_source: microbial mat

ncbi_organism_name: Ferriphaselus amnicola

ncbi_submitter: RIKEN BioResource Center


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. UBA787


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Variovorax sp.

ncbi_submitter: EPFL


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0678S

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4476

ncbi_submitter: University Hospital Regensburg


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Siberia; Kolyma Indigirka Lowland Region

ncbi_isolation_source: ancient permafrost soil

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University or Tennessee Knoxville


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_isolate: AOP23_I1_surf _bin _5

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP23_I1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Ardenticatenaceae bacterium


ncbi_organism_name: Kitasatospora sp. NPDC127121

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_isolate: AOP43_F2_surf _bin _1

ncbi_organism_name: Brevibacterium sp.

ncbi_strain_identifiers: AOP43_F2_surf _bin _1


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Harpalus anxius


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Azonexaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Bacteriovoracaceae bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2398

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_isolation_source: forest soil

ncbi_organism_name: Dyella halodurans

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: China: Fangchenggang

ncbi_isolation_source: anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangxi Zhuang Autonomous Region Center for Disease Control and Prevention


ncbi_country: USA: California

ncbi_isolation_source: rectum

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Psychrobacter pasteurii


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Salegentibacter sp.

ncbi_submitter: American Museum of Natural History


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: soil

ncbi_organism_name: Lachnoclostridium sp. UBA1308

ncbi_submitter: University of Queensland


ncbi_country: Finland

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Stomatobaculum longum

ncbi_submitter: EMG


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_country: China: HeNan

ncbi_isolation_source: Drainage liquid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolate: Pectobacterium versatile A102-S1-F16

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A102-S1-F16

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Greenland

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S407

ncbi_submitter: Technical University of Denmark


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 5


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolate: pure strain

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: pure strain

ncbi_submitter: dtu national food institute


ncbi_country: Mediterranean Sea

ncbi_organism_name: Phycisphaera sp. TMED9

ncbi_submitter: University of Southern California


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Arthrobacter sp. 35W

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFOXYD1_FULL_44_9


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA1323

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA1323


ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_assembly_name: lactobacillus plantarum BFE5092

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Handong Global University


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Stomatohabitans albus

ncbi_strain_identifiers: SYSU M7M531

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Wippra


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae serogroup III

ncbi_submitter: GSK Vaccines


ncbi_country: Canada: Quebec

ncbi_organism_name: Escherichia coli

ncbi_submitter: Government of Canada


ncbi_submitter: University of Florida


ncbi_isolation_source: human gut

ncbi_organism_name: Hafniaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Lake Washington

ncbi_organism_name: Acidovorax sp. 59

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Sulfurospirillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: Germany: Tuttendorf

ncbi_isolation_source: wet soil next to a mine drainage

ncbi_organism_name: Pseudomonas sp. RGB

ncbi_strain_identifiers: RGB

ncbi_submitter: TU Bergakademie Freiberg


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_isolate: AOP30_D2_surf _bin _8

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP30_D2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LSHTM


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium