gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: France

ncbi_genome_representation: full

ncbi_isolation_source: cheese

ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_submitter: INRA


ncbi_isolation_source: screen

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Wellcome Sanger Institute


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: USA: Columbus Ohio

ncbi_isolation_source: oral subgingival

ncbi_organism_name: Desulfobulbus oralis

ncbi_refseq_category: reference genome

ncbi_submitter: Oak Ridge National Laboratory

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Spain: mediterranean nord-east coast

ncbi_isolation_source: flowers from a wild plant

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Girona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus sp. IVB6214

ncbi_submitter: University of Bern


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 20 PSU in greater than .8 micron size fraction

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylococcales bacterium


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-188

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: National Institute of Health, Portugal


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: bone infection of foot

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Buttiauxella sp. JUb87

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Cobaki Lake NSW

ncbi_isolation_source: freshwater

ncbi_organism_name: Umezakia ovalisporum CobakiLakeA

ncbi_strain_identifiers: CobakiLakeA

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University


ncbi_submitter: City University of Hong Kong


ncbi_country: USA

ncbi_submitter: USDA


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Institute of Experimental Medicine


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Chile: Region de Aysen

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA:Delaware Bay; Delaware

ncbi_isolation_source: bay water summer D sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: DOE JGI


ncbi_country: United Kingdom

ncbi_isolation_source: root from Arable land

ncbi_organism_name: Pseudomonas sp. A-RE-7

ncbi_submitter: Rothamsted Research


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_assembly_level: Chromosome

ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Pseudomonas sp.


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Sphingobacteriia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;x__environmental samples;s__uncultured Sphingobacteriia bacterium


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010081


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Mycobacterium tuberculosis OM-V02_005

ncbi_submitter: Osaka City University


ncbi_country: China: Nanchang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Peking University Health Science Center


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Dorea sp.

ncbi_submitter: AAFC


ncbi_submitter: University of Pittsburgh


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Chryseobacterium rhizosphaerae

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterobacter sp. HK169

ncbi_submitter: Institute of Environmental Science and Research


ncbi_isolation_source: stool

ncbi_organism_name: [Pseudopropionibacterium] massiliense

ncbi_submitter: URMITE


ncbi_country: Spain: Madrid

ncbi_isolation_source: periprosthetic tissue specimen

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Argentina: Balcarce; Buenos Aires province

ncbi_isolation_source: Rectal swab of live bovine cattle

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Instituto Nacional de Tecnologia Agropecuaria


ncbi_organism_name: bacterium NLAE-zl-H437

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cobetia marina

ncbi_submitter: Ocean University of China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: China Jiliang University


ncbi_organism_name: Glutamicibacter endophyticus

ncbi_submitter: Shandong Agricultural University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-688

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: Human faeces

ncbi_organism_name: Salmonella sp. SJTUF14523

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: pig gut metagenome


ncbi_country: South Korea

ncbi_isolation_source: tongue coating

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: DOCSMEDI Co., Ltd.


ncbi_country: Brazil

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: UFMG


ncbi_country: China: Anhui

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Ehrlichia chaffeensis str. Wakulla

ncbi_strain_identifiers: Wakulla

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia;x__canis group;s__Ehrlichia chaffeensis;x__Ehrlichia chaffeensis str. Wakulla


ncbi_organism_name: Streptomyces sp. PsTaAH-124

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: Staphylococcus aureus SH1

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA


ncbi_organism_name: Aneurinibacillus thermoaerophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_isolation_source: sea water

ncbi_organism_name: Alphaproteobacteria bacterium UBA4588

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8654

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Ireland

ncbi_isolation_source: Bronchoalveolar lavage or sputum

ncbi_organism_name: Mycolicibacterium goodii

ncbi_submitter: St. James's Hospital


ncbi_organism_name: Tardiphaga sp. 841_E9_N1_2

ncbi_submitter: VIB


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium TMED133

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 319

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1139

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_isolate: ESBKM

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0120

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Australia: Perth

ncbi_submitter: University of Western Australia


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine sample

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Virgibacillus sediminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Flavipsychrobacter stenotrophus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. 142MFCol3.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA:Wyoming; Yellowstone National Park; Mouthful Geyser OF2 hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Ruminococcus sp. CAG:488

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Genome of Burkholderia sp. R-69658

ncbi_country: Belgium: Ghent

ncbi_isolation_source: top soil (details in SAMN11609840)

ncbi_organism_name: Paraburkholderia aspalathi

ncbi_submitter: LM-UGent


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: uncultured Halomonas sp.


ncbi_organism_name: Methylobacterium sp. NPDC097137

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Amycolatopsis sp. NPDC058340


ncbi_country: China: Jilin

ncbi_organism_name: Gilliamella sp. B14384G10

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus subtilis J22

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis J22


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces microflavus


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Gloeobacterales cyanobacterium


ncbi_organism_name: Massilia atriviolacea

ncbi_strain_identifiers: SOD

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Paenibacillus sp. sgz500992

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Clostridiales bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0698

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-690

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Australia

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ausgem


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China:Henan; Ruzhou

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_isolation_source: not known


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


gtdb_type_species_of_genus: t

ncbi_organism_name: Gemmata obscuriglobus

ncbi_submitter: Creighton University


ncbi_country: Australia: Queensland

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM U1070


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas glycinae

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_assembly_name: Methylibium sp. T29-A 2.0

ncbi_country: Hungary

ncbi_isolation_source: water

ncbi_organism_name: Methylibium sp. T29

ncbi_submitter: MiOxyFun


ncbi_organism_name: Streptomyces sp. NPDC093991

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Syntrophales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: ear

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_country: Singapore

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: JAM

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_organism_name: Campylobacter lari

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: EMG


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Acidaminococcaceae bacterium UBA2453

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N45958 v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: China: Tangtou Coast; Zhoushan

ncbi_isolation_source: oyster shells mixed with brown algae

ncbi_organism_name: Marinomonas vulgaris

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: Lund University


ncbi_country: China: Xinjiang

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: USA: New Mexico

ncbi_isolation_source: gut

ncbi_organism_name: Elizabethkingia anophelis Ag1

ncbi_submitter: New Mexico State University


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_country: Italy

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland: Cork

ncbi_isolation_source: human faecal sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University College Cork


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD1102

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Big Grassy; ON

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Tanzania: Zanzibar

ncbi_isolation_source: chicken meat

ncbi_submitter: University of Bern


ncbi_isolation_source: chicken meat - carcass

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: Faculte de Medecine, Universite Paris-Saclay


ncbi_country: Algeria: Chrea

ncbi_isolation_source: water

ncbi_organism_name: Leptospira chreensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Weltevreden

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru: Piura

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: UIUC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfobulbaceae bacterium UBA5750

ncbi_submitter: University of Queensland


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_518A6

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: food

ncbi_submitter: China Agricultural University


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Aeromonas veronii


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: NATIONAL INSTITUTE OF BIOTECHNOLOGY(NIB)


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolate: NJFLPFMI

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: NJFLPFMI

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Stappia taiwanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13407

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microbacterium sp. GbtcB4

ncbi_submitter: Central South University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Nomurabacteria bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Maribacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Chryseobacterium sp.


ncbi_organism_name: [Pasteurella] aerogenes

ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptomyces sp. NPDC059989

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Quadram Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 211

ncbi_organism_name: Staphylococcus auricularis

ncbi_strain_identifiers: SNUC 3034

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa BL13

ncbi_submitter: Broad Institute


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Curtobacterium sp. P97

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Mahidol University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Saudi Arabia

ncbi_isolation_source: Dammam

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nebraska Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada

ncbi_isolation_source: Hydroponic greenhouse

ncbi_organism_name: Agrobacterium salinitolerans

ncbi_submitter: KU Leuven


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Water

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Sciences of Gafsa


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_country: Chile

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Vibrio cholerae 623-39

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pantoea piersonii


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0013


ncbi_organism_name: Kibdelosporangium phytohabitans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Utqiagvik; Alaska CRREL Permafrost Tunnel

ncbi_isolation_source: Cryopeg brine water

ncbi_organism_name: Marinobacter sp. M2C

ncbi_submitter: University of Washington


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: China: Henan

ncbi_isolation_source: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Henan Agricultural University


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Candidatus Promineofilum glycogenicum

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;s__Candidatus Promineofilum glycogenicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;s__Candidatus Promineofilum glycogenicum


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Water bottle

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Limimaricola soesokkakensis

ncbi_submitter: Xiamen University


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Hyphomonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: Escherichia coli str. TO124

ncbi_strain_identifiers: Escherichia coli str. TO124

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Avirikenella pullistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;x__Rikenellaceae incertae sedis;g__Candidatus Avirikenella;s__Candidatus Avirikenella pullistercoris


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: Netherlands Institute of Ecology (NIOO-KNAW)


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: enriched from a lab-scale EBPR bioreactor

ncbi_organism_name: Candidatus Accumulibacter appositus

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter appositus


ncbi_country: USA: IL

ncbi_isolation_source: Organic Soy

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan

ncbi_isolation_source: surface seawater

ncbi_organism_name: Thalassobius vesicularis

ncbi_strain_identifiers: CC-AMW-E

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Japan

ncbi_isolation_source: water

ncbi_organism_name: Sphingopyxis sp. FD7

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Corynebacterium glucuronolyticum

ncbi_submitter: AAFC


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Erwinia rhapontici

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Burkholderia cepacia

ncbi_strain_identifiers: DDS 7H-2

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Klebsiella sp. RHBSTW-00215

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces sp. NPDC046931

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Balneola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Rhodoferax sp.


ncbi_organism_name: Eubacterium callanderi


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: GZ

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Fimbriimonadaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Turkey: city of Erzurum

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Iowa State University


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermoanaerobacter sp.

ncbi_submitter: The Ohio State University


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_country: Tanzania: Dar es Salaam

ncbi_isolation_source: patient in hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Bergen


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1140

ncbi_submitter: Broad Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: TX

ncbi_isolation_source: bovine cow cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tongji University


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Pseudoxanthomonas broegbernensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Armatimonadales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Competibacterales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Competibacterales;x__unclassified Candidatus Competibacterales;s__Candidatus Competibacterales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_country: USA: NY

ncbi_isolation_source: Tick

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Bartonella tribocorum CIP 105476

ncbi_submitter: Department of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics Center for Infectious Disease Dynamics, Penn State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Philippines: Manila Bay

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG14409

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG10462


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: IMG-taxon 2634166323 annotated assembly

ncbi_organism_name: Isobaculum melis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Lake Erie

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Glaciihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 30

ncbi_submitter: Oregon State University


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Dysgonomonas mossii

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycobacterium tuberculosis H37Ra

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: South Africa:Brits

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China

ncbi_isolation_source: China

ncbi_organism_name: Leptospira interrogans


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIMI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Georg-August-University Goettingen


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Hong Kong

ncbi_isolation_source: feces

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Canada: Lacombe

ncbi_organism_name: Galactobacillus timonensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Airway lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Streptomyces sp. DT24

ncbi_submitter: University of Liege


ncbi_organism_name: Klebsiella sp. C311

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Proteus penneri

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Chlamydiales bacterium 38-26

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;x__unclassified Chalmydiales;s__Chlamydiales bacterium 38-26


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Mediterraneibacter sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_organism_name: Bordetella pertussis B1831

ncbi_submitter: RIVM


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R669;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NW LYH

ncbi_submitter: University of Bath


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Munster Technological University


ncbi_country: Australia

ncbi_isolation_source: wound

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Tectimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;s__Candidatus Tectimicrobiota bacterium


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Mycobacterium tuberculosis T46

ncbi_submitter: Broad Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Desulfosoma sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_organism_name: Legionella israelensis

ncbi_submitter: SC


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_36_10b


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Segatella copri

ncbi_submitter: University of Chicago


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Nocardia sp. CDC160

ncbi_submitter: National Institute for Communicable Disease Control and Prevention,China CDC


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Mameliella alba

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Thauera sp. JM12B12

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Porphyromonas gingivalis


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Foshan

ncbi_isolation_source: manure

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Florida;Rock Key

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: China: Guangxi; Dachang

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Golm

ncbi_isolation_source: root

ncbi_organism_name: Bacillus sp. Root239

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Root239


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter sp. WCHA55

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8485

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Beijing

ncbi_isolation_source: Piglet feces

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Beijing Da Bei Nong Science and Technology Group Co., Ltd.


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sphingobacterium sp. Mn56C

ncbi_submitter: University of Tehran


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_isolation_source: Surfaces of food processing equipments

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: Gar NS 16

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Netherlands

ncbi_isolation_source: Plant material

ncbi_organism_name: Pseudomonas savastanoi pv. fraxini

ncbi_strain_identifiers: CFBP 5062

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. fraxini

ncbi_type_material_designation: assembly from pathotype material


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Sainte-Anne de Bellevue

ncbi_isolation_source: left index finger

ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_assembly_name: freshwater MAG --- A-4_bin-050

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Auburn University


ncbi_isolation_source: clinical

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM 43479


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Microcoleus sp. FACHB-831

ncbi_submitter: South China Normal University


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sudan

ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: King Abdulaziz University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Flectobacillus major DSM 103

ncbi_strain_identifiers: DSM 103

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Flectobacillaceae;g__Flectobacillus;s__Flectobacillus major;x__Flectobacillus major DSM 103


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_submitter: University of Pavia


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Paenibacillaceae bacterium


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Sorangium sp. So ce362

ncbi_strain_identifiers: So ce362

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce362


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: candidate division NPL-UPA2 bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division NPL-UPA2;s__candidate division NPL-UPA2 bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ghent University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of California, Davis


ncbi_organism_name: Labrys monachus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Ground turkey

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Netherlands

ncbi_isolation_source: food

ncbi_submitter: TIFN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Curtobacterium citreum

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Georgia Tech


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: San Antonio-Texas

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_country: China: Hangzhou

ncbi_isolation_source: ascites

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Nocardioides sp.


ncbi_country: USA: TX

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas Tech University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas pudica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BPSmg

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Terasakiella sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11129

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Pseudarthrobacter sp. CCNWLW207

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Melbourne


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: GDMCC 1.258

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA1041

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Laboratory Medicine


ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Rhodoblastus sp.


ncbi_assembly_name: LMG 3411T

ncbi_organism_name: Achromobacter agilis

ncbi_submitter: LM-UGent


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_assembly_name: Rumen uncultured genome RUG13745

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Proteus terrae

ncbi_submitter: Washington University


ncbi_isolation_source: Blood


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Comamonadaceae bacterium OH3737_COT-264

ncbi_submitter: UC Davis


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: Rumen uncultured genome RUG434

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_country: USA

ncbi_organism_name: Escherichia coli FRIK1999

ncbi_submitter: Institute for Genome Sciences


ncbi_country: India: Hyderabad

ncbi_organism_name: Bacillus cabrialesii

ncbi_submitter: ICAR Indian Institute of Rice Research


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: BGI


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:927

ncbi_submitter: DTU


ncbi_organism_name: Klebsiella pneumoniae UHKPC45

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Chang Jung Christian University


ncbi_country: Burkina Faso

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Actinokineospora globicatena

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium