ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_assembly_name: Mmor CYJ1

ncbi_genome_representation: full

ncbi_organism_name: Morganella morganii

ncbi_submitter: Jiangxi Agricultural University


gtdb_representative: f

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_level: Contig

ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthobacter flavus

ncbi_submitter: Harvard Medical School


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8482

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerotignum merdipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Lebanon

ncbi_strain_identifiers: VRE 55

ncbi_submitter: Lebanese American University


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Makerere University


ncbi_country: China: Chendu; Shenzhen; Changsha; Tangshan; Chongqing; Shanghai; Guangzhou

ncbi_isolation_source: leachates mixture from 7 landfills

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Science


ncbi_country: India

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: uncultured Eisenbergiella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Pasteurella oralis

ncbi_submitter: Center for Bioinformatics


ncbi_country: Turkey: Balikesir; Gonen

ncbi_isolation_source: hot water

ncbi_organism_name: Anoxybacillus gonensis

ncbi_strain_identifiers: NCIMB 13933

ncbi_submitter: Karadeniz Technical University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella stercoris

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmj

ncbi_submitter: NHGRI/NIH


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium sp. ACS4331

ncbi_submitter: JCVI


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Cincinatti

ncbi_isolation_source: blood

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: South Korea: Daegu

ncbi_isolation_source: feces

ncbi_organism_name: Corynebacterium intestinale

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8093

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0007

ncbi_submitter: University of Liege


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Eupithecia inturbata


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: Cepheid


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_organism_name: Candidatus Babeliaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Babeliaceae;x__unclassified Candidatus Babeliaceae;s__Candidatus Babeliaceae bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Parma


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Lactobacillaceae bacterium UBA5810

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA1993


ncbi_isolate: Homo sapiens

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: Homo sapiens

ncbi_submitter: AIT


ncbi_country: Nigeria

ncbi_isolation_source: stool

ncbi_submitter: Cepheid


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_isolation_source: human stool

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: DOE JGI


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Clostridium sp. CAG:138

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: food sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Coimbra


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutales bacterium UBA2995

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__unclassified Opitutales;s__Opitutales bacterium UBA2995


ncbi_organism_name: Streptomyces sp. NPDC050788

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Nocardia abscessus

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: CAU


ncbi_assembly_name: freshwater MAG --- KT6_bin-564

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Erysipelothrix sp.


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerovibrio slackiae

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolate: AOP30_C1_coeur _bin _6

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: AOP30_C1_coeur _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Pseudomonas sp. yb_5

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Thauera phenylacetica

ncbi_submitter: Delft University of Technology


ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Veillonella dispar

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Lactobacillus delbrueckii subsp. delbrueckii

ncbi_submitter: INRAE


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Toho University


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Virgibacillus dokdonensis

ncbi_submitter: URMITE


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Russia: Moscow

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Nev5-1

ncbi_submitter: University of Texas at Austin


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Puerto Rico: VEGA ALTA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Tropicimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: China: Huizhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Escherichia coli K-12


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


gtdb_type_species_of_genus: t

ncbi_organism_name: Rhodothalassium salexigens DSM 2132

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Taiwan

ncbi_isolation_source: Oil-polluted site

ncbi_organism_name: Pseudoxanthomonas kaohsiungensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Helsinki


ncbi_country: India: Punjab; Ludhiana; Sheikhdaulat

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Canada: Calgary

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: MSU


ncbi_organism_name: Halomonas sp. 19A_GOM-1509m


ncbi_country: Canada: Alberta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Homeothermus sp.

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Candidatus Homeothermus;x__unclassified Candidatus Homeothermus;s__Candidatus Homeothermus sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Dalian Polytechnic University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99592;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 141


ncbi_country: Denmark: Soeby; Aeroe; Under a tree near Soeby campsite close to sea

ncbi_organism_name: Micromonospora sp. NBC_01655

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: gut

ncbi_organism_name: Sutterella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Candidatus Parvibacillus calidus


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: the seqafrica consortium


ncbi_submitter: City University of Hong Kong


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Russia: Saransk

ncbi_isolation_source: affected cabbage tissue

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Pigmentiphaga sp.

ncbi_submitter: Shanghai Jiaotong University


ncbi_country: Botswana

ncbi_isolation_source: Ting

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Rumen uncultured genome RUG11315

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: DOE JGI


ncbi_country: Zambia: Chambishi

ncbi_isolation_source: copper mine

ncbi_organism_name: Acidithiobacillus caldus

ncbi_strain_identifiers: ZBY

ncbi_submitter: Central South University


ncbi_country: Sweden

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Panama

ncbi_isolation_source: lichen thallus

ncbi_organism_name: Nostoc sp. NMS8

ncbi_submitter: University of Liege


ncbi_organism_name: Morganella morganii

ncbi_submitter: MPI for Evolutionary Biology


ncbi_country: Germany

ncbi_isolation_source: valvular endocarditis

ncbi_organism_name: Wielerella bovis

ncbi_submitter: University of Bern


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_organism_name: Staphylococcus sp. 30400_3112M30941

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Cellulomonas massiliensis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Antarctica: Cotton Glacier

ncbi_organism_name: Frigoribacterium sp. CG_9.8

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Zhongshania aliphaticivorans

ncbi_submitter: SponGES


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Vibrio sp. F12

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Nasal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Erysipelotrichaceae bacterium UBA6143

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Streptomyces sp. SM1P

ncbi_submitter: Universitas Tanjungpura


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexaceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Caulobacteraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC017201

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia albertii

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bacteroides eggerthii


ncbi_assembly_name: BrkA1 for Burkholderia sp. strain A1

ncbi_country: Japan: Osaka

ncbi_isolation_source: breeding environment of Dorcus hopei binodulosus

ncbi_organism_name: Burkholderia sp. A1

ncbi_submitter: Osaka Ohtani University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus GGMC6008

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: USA: NY

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Maryland


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: England

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: CDC


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Bacillus swezeyi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: human

ncbi_submitter: Texas Tech University


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: ginseng field

ncbi_organism_name: Chryseobacterium panacisoli

ncbi_strain_identifiers: Gsoil 183

ncbi_submitter: Hankyong National University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1089

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Staphylococcus aureus M1472


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Kochi University


ncbi_organism_name: Amycolatopsis sp. NPDC000673

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Russia: Western Siberia

ncbi_isolation_source: water mixtures taken directly from production well-heads

ncbi_organism_name: Petrotoga sp. SL27

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pueribacillus sp.


ncbi_country: China: Yingkou

ncbi_isolation_source: soil

ncbi_organism_name: Glycomyces sp. YM15

ncbi_submitter: School of life science


ncbi_country: USA: Mississippi Canyon

ncbi_isolation_source: trophosome

ncbi_organism_name: endosymbiont of Escarpia spicata

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__endosymbiont of Escarpia spicata


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces sp. V1I1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: IMG-taxon 2698536819 annotated assembly

ncbi_organism_name: Flavobacterium cucumis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B120;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Rhodoferax sp.


ncbi_isolate: AOP36_A1_surf _bin _27

ncbi_organism_name: Nesterenkonia sp.

ncbi_strain_identifiers: AOP36_A1_surf _bin _27

ncbi_submitter: Genoscope


ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: PA

ncbi_organism_name: Escherichia coli DEC7A

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_assembly_name: IMG-taxon 2724679733 annotated assembly

ncbi_organism_name: Alcanivorax sp. DSM 26295


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Kamdhenu University


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Halobacteriovorax sp. ZH5_bin.2

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Aequorivita lipolytica

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolate: Anabaena CCY 9614

ncbi_organism_name: Anabaena sp. CCY 9614

ncbi_strain_identifiers: Anabaena CCY 9614

ncbi_submitter: royal netherlands institute for sea research (nioz)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;x__unclassified Anabaena;s__Anabaena sp. CCY 9614


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Leifsonia sp. NPDC058230

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: Root nodules of Aeschynomene indica

ncbi_organism_name: Ralstonia sp. SET104

ncbi_submitter: Ryukoku University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: JCVI


ncbi_country: Germany: exploratory Hainich

ncbi_isolation_source: grassland soil

ncbi_organism_name: Paracoccus methylovorus

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China: Jiangsu

ncbi_isolation_source: pigeon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprococcus sp. AF18-48

ncbi_submitter: BGI


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Jason Brunt, Arnoud H M van Vliet, Sandra C Stringer, Brigitte G Dorner, Martin B Dorner, Andrew T Carter, Michael W Peck


ncbi_isolation_source: poplar bark

ncbi_organism_name: Pseudoclavibacter sp. 13-3

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermodesulfobacteriaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: China: Anhui

ncbi_submitter: University of Science and Technology of China


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Morganella sp. HMSC11D09

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. HMSC11D09


ncbi_isolation_source: not provided

ncbi_organism_name: Bifidobacterium scardovii

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Mesorhizobium sp. M0895

ncbi_submitter: Washington State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Malaysia: Kulim

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Microbacterium sp. As-52

ncbi_submitter: Key Laboratory of soil Environmental He


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: human gut


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Leucothrix sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oribacterium parvum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: SC


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: CA

ncbi_isolation_source: antelope duiker feces (Cephalophus natalensis)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Washington

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM75_1280


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pampinifervens diazotrophicum

ncbi_submitter: University of Nevada, Las Vegas


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Ecuador: Quito

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Geomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D2_bin-1089

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_isolation_source: Soil

ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: University of Dundee


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Azospirillum argentinense

ncbi_submitter: Agrosavia


ncbi_country: China: Shatin

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-0274

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Fusobacterium nucleatum CTI-1

ncbi_submitter: Broad Institute


ncbi_country: USA: Maywood

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Verrucomicrobium sp.


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Tibet

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces agglomeratus

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: human isolate (oral)

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIRM-BIA 866

ncbi_submitter: Brigham Young University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Kordiimonadales bacterium IMCC3096

ncbi_submitter: Inha University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Peptostreptococcus porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Enterobacter quasimori

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_submitter: Oita university


ncbi_organism_name: uncultured Calditrichota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Calditrichota;x__environmental samples;s__uncultured Calditrichota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Stenotrophomonas sp. 2MCAF14_2

ncbi_submitter: CCRP


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Kenya

ncbi_organism_name: Verrucomicrobia bacterium UBA7550

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA7550


ncbi_organism_name: Actinophytocola sp. NPDC049390

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter sichuanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Escherichia coli H730

ncbi_submitter: Broad Institute


ncbi_organism_name: Shewanella oneidensis MR-1

ncbi_submitter: TIGR


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Polynucleobacter sphagniphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: South China Agricultural University


ncbi_country: China: eastern marginal seas

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio ouci

ncbi_submitter: Ocean University of China


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Moraxella sp. CTOTU46934


ncbi_country: Spain

ncbi_isolation_source: day-old chicks

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli JCM 5491

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Exeter


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila vernalis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila vernalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila vernalis


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Germany: Cottbus

ncbi_isolation_source: environment

ncbi_organism_name: Ochrobactrum sp. BTU1

ncbi_submitter: BTU Cottbus-Senftenberg, Institute of Biotechnology


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Switzerland: Bern

ncbi_isolation_source: food

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Segatella copri

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_name: freshwater MAG --- A3_bin-631

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Northwestern University


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. N19

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Enterovibrio norvegicus


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Klebsiella sp. 98334

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: South Korea: Suwon

ncbi_isolation_source: vancomycin resistant strain up to 32 mg/L; adaptively evolved laboratory strain from parent strain S. aureus USA300 FPR3757

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: School of Medicine, Sungkyunkwan University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: Bangladesh

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.28 MAG

ncbi_isolate: bin.28 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Pseudidiomarina mangrovi

ncbi_strain_identifiers: bin.28 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptococcus parasuis


ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_submitter: Universidad de Concepcion


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia

ncbi_isolation_source: legume nodule

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation (CSIRO)


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-13283

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: uncultured Ructibacterium sp.


ncbi_organism_name: Paenibacillus rhizophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Pseudomonas caricapapayae

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Institute of Environmental Science and Research


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Marinovum sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: clinical

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: DMB SH20033

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: South Korea: Nonsan

ncbi_isolation_source: Livestock Wastewater

ncbi_organism_name: Alcaligenes sp. NLF5-7

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_country: China: Hubei; Suizhou

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: SZ

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: Dental plaque

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype e str. SA2876


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV116

ncbi_submitter: Washington University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Pantoea sp. YU22

ncbi_submitter: Yenepoya University, Mangalore, India


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Department of Veterinary Microbiology Kamdhenu University Navsari


ncbi_organism_name: uncultured Halanaerobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Treponema sp.


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_assembly_name: Escherichia coli CVM N36620PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N36620PS

ncbi_submitter: FDA


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: COMU, Canakkale


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W85810

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG11982

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Ningxia province

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: Antarctica: South Shetland Islands; Livingston Island

ncbi_organism_name: Glaciibacter psychrotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_country: Italy: Piacenza

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Russia: Belgorod

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SRCAMB


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: China: Sichuan

ncbi_isolation_source: Pus

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG14568

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Klebsiella africana

ncbi_submitter: Hopital Bicetre


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: bacterium ADurb.Bin132

ncbi_submitter: University of Illinois


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_submitter: University of Colorado


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Rumen uncultured genome RUG10081

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Rhodopseudomonas pseudopalustris

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus M67953

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions 0.1 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_43_10


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0545


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: Re-isolation from ATCC 39073

ncbi_organism_name: Neomoorella thermoacetica


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodococcus sp. NPDC006774

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC006774


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: Stanford University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Blumenau


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. NW1241


ncbi_organism_name: uncultured Stenotrophomonas sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0378

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Australia: Tasmania

ncbi_isolation_source: hind gut digesta

ncbi_organism_name: Aliivibrio finisterrensis

ncbi_submitter: University of Tasmania


ncbi_country: Chile: Santiago

ncbi_strain_identifiers: FTP 81

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: China

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: South China University of Technology


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: University of Queensland


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Lake Erie

ncbi_organism_name: Silanimonas sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: stool

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_country: China: Jiaxing City; Zhejiang Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_name: freshwater MAG --- Loc090116-7m_bin-0627

ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Georgia: Marneuli

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus

ncbi_submitter: NCDC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Zurich


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Turicimonas muris

ncbi_submitter: Geneva University Hospitals


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerosporomusa sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__Negativicutes incertae sedis;f__Acetonemataceae;g__Anaerosporomusa;x__environmental samples;s__uncultured Anaerosporomusa sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Gyeonggi-do Agricultural research & Extension Services


ncbi_organism_name: Amycolatopsis sp. NPDC051373

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: Russia: The Republic of Dagestan

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Canada: British Columbia

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA

ncbi_isolation_source: Throat

ncbi_organism_name: Bordetella bronchialis

ncbi_submitter: University of Michigan


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Turkey

ncbi_isolation_source: traditional yogurt 12

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: TSGB 4254

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_country: Viet Nam

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: ENDOBICA


ncbi_country: USA: Colorado

ncbi_isolation_source: nasal and infraorbital sinuses

ncbi_organism_name: Avibacterium sp. 21-586

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium bifidum LMG 13195

ncbi_submitter: IPLA-CSIC


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: AnimalBiome


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: bacterium

ncbi_submitter: Universite Laval


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Plant

ncbi_organism_name: Rhizobium indigoferae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium poinsettiae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. NPDC048389

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides marinus

ncbi_submitter: City University of Hong Kong


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhodoferax lacus

ncbi_submitter: Inha University


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Wisconsin - Madison