ncbi_organism_name: Exiguobacterium acetylicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


gtdb_representative: t

ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Minnesota


ncbi_organism_name: Oleispira sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Methylobacterium longum

ncbi_refseq_category: reference genome

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: MD

ncbi_isolation_source: Sesame Seed White

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2671180221 annotated assembly

ncbi_organism_name: Pelagirhabdus alkalitolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Imala

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Abaetetuba


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus intermedius


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sturter culture Kefirferment

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_submitter: Imperial College London


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinobacterium sp. xm-d-543

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_organism_name: Elusimicrobia bacterium CG1_02_56_21

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium CG1_02_56_21


ncbi_country: Canada: British Columbia

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mucilaginibacter sp. NFX135

ncbi_submitter: iBET


ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Halopseudomonas laoshanensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_strain_identifiers: NCPPB 1326

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Universidade Federal da Bahia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: freshwater MAG --- E14_bin-0799

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia sp. WS2422

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Paraeggerthella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Mauritius

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_strain_identifiers: NCPPB 253

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Lysinibacillus sp.


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Micromonospora sp. NPDC005171

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: yamame

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium branchiophilum;x__Flavobacterium branchiophilum NBRC 15030 = ATCC 35035


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_level: Chromosome

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tongji University


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Cold smoked salmon brine injected

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Burkina Faso: Cascades; Karfiguela

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0951

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: Lebanon

ncbi_isolation_source: almond

ncbi_organism_name: Candidatus Phytoplasma phoenicium

ncbi_submitter: Department of Agricultural and Environmental Sciences, University of Milan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIX (Pigeon pea witches'-broom group);s__Candidatus Phytoplasma phoenicium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: WA

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Washington


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CDC


ncbi_organism_name: uncultured Aquificales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Vibrio metoecus

ncbi_submitter: Universitat de Valencia


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0320R

ncbi_submitter: Broad Institute


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Saccharopolyspora erythraea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA

ncbi_isolation_source: sterile site

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Puerto Rico: near crystallizers from saltern

ncbi_isolation_source: Sand sample

ncbi_organism_name: Halobacillus litoralis

ncbi_submitter: UC Davis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Toronto


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_submitter: China CDC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: New York

ncbi_isolation_source: Raw liquid milk and whey perm

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_isolation_source: Intestine

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH1901152

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Leucobacter sp. W1478

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Eggerthia catenaformis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Terriglobia bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__unclassified Actinomycetes;s__Actinobacteria bacterium BACL4 MAG-120820-bin23


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Pseudomonas aeruginosa

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-230

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Pseudoxanthomonas mexicana

ncbi_strain_identifiers: new MAG-230

ncbi_submitter: Micoorganism


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Romania: Bihor Mountains

ncbi_isolation_source: perennial ice block

ncbi_organism_name: Psychrobacter sp. SC65A.3

ncbi_submitter: Institute of Biology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_country: Indian Ocean:Chagos Trench

ncbi_isolation_source: deep-sea sediment sample

ncbi_organism_name: Brevibacterium oceani

ncbi_submitter: Third Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Blautia producta

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Denmark

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: China: Hubei

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Korea

ncbi_isolation_source: Pig carcasses

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kyung Hee University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: EPFL


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: Clinical; respiratory sample

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: respiratory; pharyngeal smear

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Melbourne Dental School, University of Melbourne


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Brazil: Banco de Abrolhos (Parcel dos Abrolhos)

ncbi_isolation_source: water near coral reefs

ncbi_organism_name: Pseudoalteromonas sp. PAB 2.2

ncbi_strain_identifiers: PAB 2.2

ncbi_submitter: UFRJ


ncbi_country: Italy: Frasassi

ncbi_isolation_source: Pozzo dei Cristalli sulfidic cave stream

ncbi_organism_name: Sulfuricurvum sp. PC08-66

ncbi_submitter: Penn State


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 435

ncbi_submitter: SC


ncbi_assembly_name: HS1 output strain1

ncbi_isolate: HS1 output strain 1

ncbi_organism_name: Helicobacter suis HS1

ncbi_strain_identifiers: HS1 output strain 1

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Qinghai Province

ncbi_organism_name: Cellulomonas fengjieae

ncbi_submitter: China CDC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: China: Yunnan

ncbi_isolation_source: Yunnan; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: South Korea:Hwasun

ncbi_isolation_source: soil

ncbi_organism_name: Chitinophaga horti

ncbi_submitter: Chung-Ang university


ncbi_country: Brazil: Pernambuco state

ncbi_organism_name: Streptomyces sp. Caat 7-52

ncbi_strain_identifiers: Caat 7-52

ncbi_submitter: Embrapa Meio Ambiente


ncbi_country: South Korea: Jeju; Moon Island

ncbi_organism_name: Labrenzia sp. CE80

ncbi_submitter: Jeju National University


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Brazil: Iranduba; Manaus

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: University of Sao Paulo


ncbi_country: Germany

ncbi_organism_name: Mycetohabitans sp. B5

ncbi_submitter: University of Melbourne


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Ruegeria sp. 2304DJ69-11

ncbi_submitter: Hannam University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Bridger Bay in Great Salt Lake; Utah

ncbi_isolation_source: Microbial Mat

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas sp. KCJK9016

ncbi_submitter: University of Florida


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Salmonella sp. NW949

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Thiohalomonadales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_assembly_name: IMG-taxon 2597490344 annotated assembly

ncbi_organism_name: Pedobacter antarcticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Harbin City; Heilongjiang Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_submitter: INRAE Centre Val de Loire

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5057

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces sp. NPDC045470

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aerococcus viridans

ncbi_strain_identifiers: Gar NS 8

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM U1070


ncbi_submitter: UNIMI


ncbi_isolation_source: Broncheal washing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar

ncbi_organism_name: Streptococcus sp. HSISS1

ncbi_submitter: Top Institute Food and Nutrition (TIFN)


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster citroniae

ncbi_submitter: University College Cork


ncbi_country: China: Sea duck farm; Beihai

ncbi_isolation_source: coastal dune [ENVO:00000416]

ncbi_organism_name: Streptomyces fuscus

ncbi_submitter: Guangxi Minzu University


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada

ncbi_organism_name: Porphyromonas gulae DSM 15663

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gulae;x__Porphyromonas gulae DSM 15663


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea

ncbi_isolation_source: cutaneous anthrax patient

ncbi_organism_name: Bacillus anthracis str. H9401

ncbi_submitter: Korea Center for Disease Control & Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. H9401


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Clinical sample

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: NIVIP


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom: London

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Chitinophagales bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lomalinda


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: VRE 57

ncbi_submitter: Lebanese American University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus WAMC6062

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium RIFCSPLOWO2_02_FULL_42_19


ncbi_country: USA

ncbi_isolation_source: potato

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wayne State University


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Najit Technologies, Inc.


ncbi_organism_name: Peribacillus sp. NPDC046944

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. NPDC087626


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Achromobacter ruhlandii

ncbi_strain_identifiers: CCl 160

ncbi_submitter: Universidad de Buenos Aires


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-3203

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 34 - depth 10m

ncbi_organism_name: SAR324 cluster bacterium lautmerah10

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium lautmerah10


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01448

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01448


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Arizona

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Oxford


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0081

ncbi_submitter: Broad Institute


ncbi_assembly_name: version 1.0

ncbi_isolation_source: lung from a calf with pneumonia

ncbi_organism_name: Mycoplasmopsis arginini 7264

ncbi_submitter: EVOLMYCO


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Streptomyces sp. NPDC018957

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: University of Antwerp


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_assembly_name: freshwater MAG --- F4_bin-237

ncbi_isolation_source: pond

ncbi_submitter: BILS


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Antarctica

ncbi_isolation_source: Antarctica soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of New South Wales


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Texas; Channelview; Moncrief Park

ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Houston


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ireland: Dublin

ncbi_isolation_source: Broncho-alveolar lavage

ncbi_submitter: Trinity College Dublin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Porcinotec Co., Ltd


ncbi_organism_name: Parasphingopyxis sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Portugal

ncbi_organism_name: Microbacterium invictum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: keratitis

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_country: Thailand: Chachoengsao

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Mesorhizobium sp. M1217

ncbi_submitter: Washington State University


ncbi_country: Japan

ncbi_isolation_source: jejunum

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: CERELA


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Helicobacter pylori SA227A

ncbi_submitter: MHH


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Trueperella pyogenes

ncbi_strain_identifiers: SCLZ

ncbi_submitter: Southwest University


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Satna; Madhya Pradesh

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Assam Universuty


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Kansas

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Croceibacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R19

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: USA: Iowa

ncbi_isolate: Flint

ncbi_isolation_source: Guttural pouch of horse with post strangles myopathy

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_strain_identifiers: Flint

ncbi_submitter: University of Kentucky

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Fulvimonas sp.

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Agathobaculum stercoravium

ncbi_submitter: Quadram Institutte


ncbi_country: Italy: Cesena

ncbi_isolation_source: Artisanal dry-fermented salami

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: University of Bologna


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Cork

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University College Cork


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M40BS1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Ljubljana


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolate: metabat2_pooled_hicanu.947 MAG

ncbi_organism_name: Candidatus Fimimonas merdipullorum

ncbi_strain_identifiers: metabat2_pooled_hicanu.947 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Santarem; State of Para; Amazon

ncbi_isolation_source: Amazonian floodplain sediment

ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture, University of Sao Paulo


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Synechococcales cyanobacterium S06

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Dr. A L Mudaliar Post Graduate Institute of Basic Medical Sciences, University of Madras


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Salmonella sp. SC42

ncbi_submitter: Sichuan University


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Planctomycetaceae bacterium


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8867

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: CCUG 1350

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Bacillus wiedmannii

ncbi_strain_identifiers: barcode 8

ncbi_submitter: Gateway Technical College


ncbi_country: China: Zhejiang

ncbi_submitter: Hangzhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hunan Vegetable Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Anaerococcus sp. AH8042_DFU013_CI05

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Naples Federico II


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Roseburia faecis

ncbi_submitter: UIUC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus sp. 27098_8_98

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: Foshan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Rhone-Alpes

ncbi_isolation_source: bud from a walnut tree

ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 7634

ncbi_submitter: INRA


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: CAU


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Netherlands

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Dyella sp. SG609

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-799

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_organism_name: Brucella suis

ncbi_submitter: µFORGE


ncbi_country: China: Panjin; Liaoning

ncbi_isolation_source: tidal flat of the red beach

ncbi_organism_name: Marinobacter panjinensis

ncbi_submitter: Institute of Biology Co., Ltd., Henan Academy of Sciences


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: Agricultural Research Organisation - volcani center - Israel


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Demequina rhizosphaerae

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Belgium: De Haan

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Cytobacillus oceanisediminis 2691

ncbi_submitter: BGI


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-94

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_strain_identifiers: new MAG-94

ncbi_submitter: Micoorganism


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli B84

ncbi_submitter: IGS


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Microbacterium sp. zg.B185

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Sphingomonas sp. GB1N7

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Microbacterium panaciterrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Japan

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 47

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Yersinia pseudotuberculosis YPIII

ncbi_strain_identifiers: YPIII

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Escherichia coli O157:H7 str. K5852

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K5852


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Bacteroides mediterraneensis

ncbi_submitter: URMITE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SID13666

ncbi_submitter: University of Wisconsin Madiso


ncbi_isolation_source: abdominal swab of a patient with appendicitis accompanied with abscess formation

ncbi_organism_name: Corynebacterium appendicis CIP 107643

ncbi_submitter: Bielefeld University


ncbi_country: Spain: Almeria

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Microbacterium esteraromaticum

ncbi_submitter: Futureco Bioscience


ncbi_country: Iran

ncbi_organism_name: Curtobacterium aurantiacum

ncbi_strain_identifiers: CFBP 8824

ncbi_submitter: University of Tehran


ncbi_country: Switzerland

ncbi_isolation_source: fistula

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Bifidobacterium longum


ncbi_isolation_source: Urine

ncbi_submitter: WTSI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: rectal

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Federal University of Rio Grande do Sul


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Hungatella sp. UBA4568


ncbi_country: Russia

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptococcus agalactiae SS1014

ncbi_submitter: IP


ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2760

ncbi_strain_identifiers: VKM Ac-2760

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Salmonella sp. CQ22WZ0122SAL

ncbi_submitter: Wanzhou CDC


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Streptomyces sp. NPDC059171

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenibacillus sp. SAFN-054

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paenibacillus sp. NPDC058071


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Thauera chlorobenzoica

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptomyces sp. NPDC016734


ncbi_organism_name: Nonomuraea rubra

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: human gut metagenome


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Mosul


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__environmental samples;s__uncultured Latescibacterota bacterium


ncbi_organism_name: Streptococcus pyogenes ABC020047076

ncbi_submitter: Broad Institute


ncbi_country: Luxembourg: Schifflange

ncbi_isolation_source: water

ncbi_organism_name: Moraxellaceae bacterium UBA2031

ncbi_submitter: University of Queensland


ncbi_assembly_name: BSN99 Contigs

ncbi_submitter: Wayne State University


ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-0652

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: USA: South Dakota

ncbi_isolation_source: Yates Shaft; SURF

ncbi_organism_name: Geobacillus zalihae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_isolation_source: broiler carcass

ncbi_organism_name: Morganella morganii

ncbi_submitter: University Hospital Muenster


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA6229

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6229


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces paromomycinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Argentina: Pigue

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: CIDEFI


ncbi_organism_name: Leptothrix ochracea

ncbi_submitter: University of Delaware


ncbi_country: China: Lanzhou

ncbi_isolation_source: activated sludge

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Lanzhou University


ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Glycomyces sp. NPDC047010


ncbi_isolation_source: Human feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: The University of Tokyo


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Georgia: Tbilisi

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Eliava IBMV


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Silanimonas sp.

ncbi_submitter: RIKEN-BRC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp. UBA7115


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Microbacterium sp. 69-7


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Washington-Seattle


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Petrimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Thiohalobacter sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: Distal colon


ncbi_isolation_source: rice sourdough

ncbi_organism_name: Levilactobacillus spicheri DSM 15429

ncbi_submitter: Shanghai Majorbio


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: EMG


ncbi_organism_name: Marisediminicola sp. UYEF4

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: France: Aveyron

ncbi_isolation_source: subsurface water

ncbi_organism_name: Arcticibacter tournemirensis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_71 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_submitter: New England Biolabs


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: addis ababa university


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Czech Republic: Ostrovaice

ncbi_isolate: BCAP

ncbi_isolation_source: beetle abdomen

ncbi_strain_identifiers: BCAP

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Shikimatogenerans;s__Candidatus Shikimatogenerans bostrichidophilus


ncbi_country: Denmark

ncbi_isolation_source: Poultry

ncbi_organism_name: Enterococcus faecium EnGen0044

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22522;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas sanarellii

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecousia sp.


ncbi_isolate: AOP9_A1_surf _bin _14

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP9_A1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Veillonella atypica


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: China Agricultural University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Gottfriedia solisilvae

ncbi_submitter: NJAU


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA: MD

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA


ncbi_isolation_source: Stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: China: Guangzhou

ncbi_isolation_source: water

ncbi_organism_name: Proteus terrae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: India

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1020S


ncbi_organism_name: Segatella copri

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCSF


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SurvCARE


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Washington


ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Anaerococcus octavius


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria fleischmannii 1991

ncbi_submitter: University of Milan


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: New York City

ncbi_isolation_source: human blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Mount Sinai School of Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH01004


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Hungary: Debrecen

ncbi_isolation_source: Bird

ncbi_organism_name: Escherichia coli

ncbi_submitter: Debreceni Egyetem


ncbi_organism_name: Spirochaetales bacterium


ncbi_country: USA

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG_4_8_14_3_um_filter_41_13


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences