ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWB1_41_6


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: nankai university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Turkey: Selim

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG11516

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: University of Toledo


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridiales bacterium UBA7285

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Clostridiales bacterium UBA7285


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Qingdao

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium pectinilyticum

ncbi_refseq_category: reference genome

ncbi_submitter: Ocean University of China

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;x__unclassified Candidatus Fermentibacteraceae;s__Candidatus Fermentibacteraceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_organism_name: Dehalococcoides sp. JdFR-56

ncbi_submitter: University of Hawaii


ncbi_organism_name: Microcella frigidaquae

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020006715

ncbi_submitter: Broad Institute


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: VA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Pseudooceanicola sp.

ncbi_submitter: Tsinghua University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Lasioglossum villosulum


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Dysgonomonas macrotermitis

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9054

ncbi_submitter: Chinese University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG12199

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: University of Gothenburg


ncbi_country: Denmark

ncbi_submitter: Medical University of Vienna


ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Alicante


ncbi_isolation_source: cyst gastrointestinal

ncbi_organism_name: Lactobacillus sp. HMSC072E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: E.coli C158

ncbi_isolate: E.coli C158

ncbi_strain_identifiers: E.coli C158

ncbi_submitter: FUNCTIONAL GENOMICS CENTER ZURICH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Ruminococcus albus

ncbi_submitter: University of Chicago


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Methylobacterium sp. NI91

ncbi_submitter: Shihezi Unversity


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Christensenella sp. UBA1262

ncbi_submitter: University of Queensland


ncbi_organism_name: Brucella ceti M13/05/1

ncbi_submitter: Broad Institute


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: [Bacteroides] pectinophilus

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Limosilactobacillus vaginalis


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Institut hospitalo-universitaire Mediterranee infection


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: bacterium ADurb.Bin243

ncbi_submitter: University of Illinois


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Alcanivoracaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp. D55t1_190419_B8

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Megasphaera cerevisiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Arcticibacterium sp.

ncbi_submitter: University of East Anglia


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: soil

ncbi_organism_name: Sporosarcina ureae

ncbi_submitter: California State University Northridge


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shandong

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_assembly_name: Isolate 5

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kalmar county hospital


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Patescibacteria group bacterium UBA1561

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1561


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: urine

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_submitter: Department of Microbiology, Meiji Pharmaceutical University


ncbi_submitter: University of Georgia


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__pseudomallei group;s__Burkholderia pseudomallei;x__Burkholderia pseudomallei NCTC 13392;x__Burkholderia pseudomallei str. NCTC 13392 substr. morphotype_3


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_submitter: Emory University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_country: Colombia

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Mycobacterium tuberculosis T85

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_organism_name: Streptomyces sp. NRRL F-2664

ncbi_strain_identifiers: NRRL F-2664

ncbi_submitter: University of Illinois


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada: Vancouver; BC

ncbi_organism_name: Eisenbergiella tayi

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_organism_name: Pseudomonas syringae pv. lapsa

ncbi_strain_identifiers: ICMP 8813

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. lapsa


ncbi_country: China: Shanxi

ncbi_isolation_source: cloaca swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Soochow University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy Mahidol University


ncbi_country: Russia: Samara

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Paenibacillus sp. EKM205P

ncbi_submitter: University of Guelph


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-P01

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Prevotella sp. CAG:386

ncbi_submitter: DTU


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella aurantiaca

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M162S2

ncbi_submitter: Universite de Montreal


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: moss

ncbi_organism_name: Microbispora bryophytorum

ncbi_submitter: Shenyang Agricultural University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:1092


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_level: Chromosome

ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Psychrobacter namhaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. NW122

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UCSI University


ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG709

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5825

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Portland State University


ncbi_country: Italy: Mansue (TV)

ncbi_isolation_source: drinking water

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea

ncbi_isolation_source: Pig carcasses

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kyung Hee University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Fayetteville; Arkansas

ncbi_isolation_source: sludge from a nitrification basin of a wastewater treatment plant grown in increasingly acidic conditions in an aerobic bioreactor

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: USDA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: New York

ncbi_isolation_source: creek water

ncbi_organism_name: Rahnella rivi

ncbi_submitter: University of the West of England


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lacrimispora celerecrescens

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnospiraceae bacterium UBA3687

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: endosphere environment

ncbi_organism_name: Flavobacterium anhuiense

ncbi_submitter: NIOO KNAW


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: silage

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_country: Germany

ncbi_isolation_source: vegetative broth

ncbi_organism_name: Erysipelothrix inopinata

ncbi_submitter: Kyung Hee University


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_country: Kenya: Kibera

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Mediterraneibacter sp. HCN-7094

ncbi_submitter: Seoul National University


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Jiangsu

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: University of Southern California


gtdb_type_species_of_genus: t

ncbi_country: Mediterranean Sea

ncbi_isolation_source: sea-water

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira;s__Thalassospira lucentensis;x__Thalassospira lucentensis MCCC 1A00383 = DSM 14000


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Arenicella sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_submitter: South China Agricultural University


ncbi_isolate: Pectobacterium versatile C11

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile C11

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Helicobacter typhlonius


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Spain: Dilar riverbank

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CA-278952

ncbi_submitter: Novo Nordisk Center for biosustainability


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micromonosporales;f__Micromonosporaceae;g__Salinispora;s__Salinispora pacifica;x__Salinispora pacifica DSM 45546 = CNT-133


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Thermomicrobiaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China

ncbi_isolation_source: salt mine

ncbi_organism_name: Fodinibius halophilus

ncbi_submitter: Institute of microbiological technology


ncbi_country: Japan

ncbi_isolation_source: human feces

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_country: USA: Houston

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Michigan State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: South Central

ncbi_isolation_source: Cattle hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M


ncbi_organism_name: Escherichia coli O111:H8 str. CVM9634

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H8;x__Escherichia coli O111:H8 str. CVM9634


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Tenacibaculum sp. IB213877

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_organism_name: Candidatus Zhuqueibacter pondensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Zhuqueibacter;s__Candidatus Zhuqueibacter pondensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Zhuqueibacter;s__Candidatus Zhuqueibacter pondensis


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Stellenbosch University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Xiamen University


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VRS6


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_assembly_name: Rumen uncultured genome RUG12485

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-184


ncbi_country: China: Beijing

ncbi_isolation_source: Coelomic fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 309

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: CIM:MAG 309

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of British Columbia


ncbi_country: Viet Nam: Pond Loch1

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. MWH-Loch1C5

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Helicobacter typhlonius


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: Georgia Tech


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Sphingomonas pseudosanguinis


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Limnospira sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: uncultured Acidisphaera sp.

ncbi_submitter: Spribille Lab


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Haikou

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Soochow University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Xiamen University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Colombia

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas aeruginosa M8A.1

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Hepatobiliary surgery

ncbi_submitter: Guangzhou Medical University


ncbi_country: Argentina

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: Norway

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Thiodiazotropha sp. 6PLUC7

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. 6PLUC7


ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium indigoferae

ncbi_strain_identifiers: CCBAU 71042

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: boiled rice

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Groningen


ncbi_country: Slovakia: Bratislava

ncbi_isolation_source: hemp seeds

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Candidatus Roseilinea sp.

ncbi_submitter: Karlsruhe Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Thermofontia;x__Candidatus Thermofonsia Clade 3;g__Candidatus Roseilinea;x__unclassified Candidatus Roseilinea;s__Candidatus Roseilinea sp.


ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium AF36-10

ncbi_submitter: BGI


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: California

ncbi_isolation_source: Human_no contact with swine

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ST5;UCI 28

ncbi_submitter: Darrell Bayles


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: India: Mumbai

ncbi_isolation_source: Biological Sample

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Christian Medical College


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa: Northern Cape Province

ncbi_isolation_source: Ear tissue

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_organism_name: Nocardioides cavernae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Tolumonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Aerococcus urinae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Alkaliphilus sp.


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: McGill University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Federal Research and Clinical Center of Physical-Chemical Medicine of FMBA


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_organism_name: Bacteroidetes bacterium UBA1941

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA1941


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Poland: Bydgoszcz

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 2579

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA3542

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3542


ncbi_country: Mexico

ncbi_isolation_source: Swine farm

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangzhou

ncbi_submitter: South China Agricultural University


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_submitter: FDA/CDC


ncbi_country: United Kingdom

ncbi_isolation_source: wound

ncbi_organism_name: Kingella potus

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii 25307_1

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: bacterium UBP9_UBA6438

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP9_UBA6438


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Marinobacter sp. bablab_jr008

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 2

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Alloprevotella tannerae


ncbi_country: China: Beiwang Village; Luolong District; Luoyang City; Henan Province

ncbi_isolation_source: healthy cucumber rhizosphere soil.

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_D3

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Los Alamos National Lab


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: uncultured Polaromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Duffyella sp. Ts4

ncbi_submitter: Universidad Antonio Narino


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Hungary: Debrecen

ncbi_isolation_source: Bird

ncbi_organism_name: Escherichia coli

ncbi_submitter: Debreceni Egyetem


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Mycobacterium persicum

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_isolation_source: Industrialized product

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden

ncbi_isolation_source: Tissue

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Orebro University


ncbi_organism_name: Nonomuraea angiospora

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_isolation_source: wastewater treatment plant effluent

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Listeria marthii

ncbi_submitter: University of Tennessee


ncbi_assembly_name: Enterobacter cloacae NH52

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: URMITE


ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Ocean University of China


ncbi_country: United Kingdom: Carmarthen

ncbi_organism_name: Corallococcus exiguus

ncbi_submitter: Aberystwyth University


ncbi_organism_name: uncultured Melioribacter sp.


ncbi_country: Russia

ncbi_isolation_source: obtained in laboratory by selection from a strain isolated from a natural source

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_organism_name: Vibrio tasmaniensis 1F-187

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia hominis

ncbi_submitter: EMG


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: diarrheal stool

ncbi_organism_name: Clostridioides difficile

ncbi_strain_identifiers: MnCd

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf22

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of aberdeen


ncbi_organism_name: Methylovorus glucosotrophus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Phoenix

ncbi_organism_name: Bacillus pumilus


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: water

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Kosakonia cowanii


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Staples; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: India: Sikkim

ncbi_isolation_source: kinema

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: CSIR-CFTRI Mysore


ncbi_isolation_source: parotid

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases, Japan


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Technion, Israel


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Weissella cibaria


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 108

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_strain_identifiers: SNUC 430

ncbi_submitter: University of Calgary


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Bielefeld University


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Calothrix sp. MO_192.B10

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia

ncbi_organism_name: Mesorhizobium sp. XAP10

ncbi_submitter: University of Pretoria


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: EMG


ncbi_organism_name: Winogradskyella sp.


ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Halomonas sp. MMSF_3323

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: St. Albert

ncbi_isolation_source: Ixodes angustus

ncbi_organism_name: Borreliella americana

ncbi_submitter: University of Regina


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef steak (+ 3 CD; spoiled)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Pararuminococcus gallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Pararuminococcus;s__Candidatus Pararuminococcus gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pararuminococcus;s__Candidatus Pararuminococcus gallinarum


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Annandale-on-Hudson; NY

ncbi_isolation_source: Fermented kimchi

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Bard College


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: South Korea

ncbi_isolation_source: oral lichen planus biopsy

ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: Seoul National University


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Segatella oris

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces fagopyri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lysobacter sp.


ncbi_organism_name: Pseudactinotalea sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Guptibacillus hwajinpoensis


ncbi_organism_name: Serratia sp. CY65442

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY65442


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin14

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: HIE bin14

ncbi_submitter: Monash University


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: Yellowstone Lake; Wyoming

ncbi_isolation_source: biofilm attached to a sub-lacustrine hydrothermal vent

ncbi_organism_name: Caldisericum sp.

ncbi_submitter: Montana State University


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Mariniflexile sp. TRM1-10

ncbi_submitter: Yonsei University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10163

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Enterococcus hulanensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_submitter: Hangzhou Medical College


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Singapore

ncbi_isolation_source: wetland

ncbi_organism_name: Shouchella clausii

ncbi_submitter: National University of Singapore


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Germany: Bavaria; near Kochel

ncbi_organism_name: Edaphobacter modestus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Other

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Colombia: Medellin; Antioquia

ncbi_isolation_source: dental

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Universidad de Antioquia


ncbi_country: China: Xinjiang

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Finland: Karstula

ncbi_isolation_source: a stream water

ncbi_organism_name: Mycobacterium palustre

ncbi_submitter: Uppsala University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_submitter: University of La Rioja


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Icahn School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Amycolatopsis sp. NBC_00348

ncbi_submitter: Technical University of Denmark


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: CSF

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Delaware Public Health Lab


ncbi_isolation_source: sputum

ncbi_organism_name: Tatumella ptyseos


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: McGill University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_submitter: ANSES Ploufragan


ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Epulonipiscium sp.

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__unclassified Candidatus Epulonipiscium;s__Candidatus Epulonipiscium sp.


ncbi_organism_name: Actinoplanes ianthinogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus M1015


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Vibrio sp. THAF191d

ncbi_submitter: Uni Bielefeld


ncbi_submitter: Centers for Disease Control, R.O.C (Taiwan)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Prevotella histicola


ncbi_country: USA: Washington; University Place

ncbi_isolation_source: One-stage PNA wastewater reactor

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: University of Washington


ncbi_country: Russia: Saint Petersburg

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_strain_identifiers: 379 StPb PI

ncbi_submitter: Saint Petersburg Pasteur Institute


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Bacteroides caecimuris


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas sp. 18101001-2

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Parma


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Agrobacterium salinitolerans

ncbi_strain_identifiers: NCPPB 2657

ncbi_submitter: Oregon State University


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1503

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_country: India

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Flavobacterium pokkalii

ncbi_submitter: IMEDEA


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: 7-day-old marine biofilm in Hong Kong waters

ncbi_organism_name: Limimaricola hongkongensis DSM 17492

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_isolation_source: Surveillance swab

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp. AM16-9

ncbi_submitter: BGI


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: USA: IA

ncbi_isolation_source: environmental

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 607309-34


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Brevibacillus sp. JB24b

ncbi_submitter: University of Massachusetts Dartmouth


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_submitter: University of East Anglia


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Psychrobacter sp. T6-5

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces lydicus


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_organism_name: uncultured Loktanella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Staphylococcus shinii


ncbi_organism_name: Streptomyces griseoincarnatus


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Erysipelothrix sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Sneathia sanguinegens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_country: Pacific Ocean

ncbi_isolate: SP1 MAG

ncbi_isolation_source: Ocean Station PAPA epipelagic zone

ncbi_organism_name: Synechococcus sp. SP1 MAG

ncbi_strain_identifiers: SP1 MAG

ncbi_submitter: UNC Chapel Hill


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE162

ncbi_submitter: Broad Institute


ncbi_organism_name: Hoylesella marshii

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Aerococcus mictus

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. URIL14HWK12:I6

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Sphingobium sp.


ncbi_country: United Kingdom: Scotland; Southern General; Glasgow

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_country: China

ncbi_isolation_source: liver

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Melioribacter roseus P3M-2


ncbi_organism_name: Rhodococcus opacus


ncbi_country: China: Xinjiang

ncbi_isolation_source: terrestrial

ncbi_organism_name: Nostoc sp. XA010

ncbi_submitter: institute of hydrobiology


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Spain: Cantabria; Altamira Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Pseudomonas donghuensis

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Alimentary Pharmabiotic Centre


ncbi_country: USA: Oregon

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Providencia vermicola

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Thalassospira sp. SN3W

ncbi_submitter: University of Cincinnati


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0302308.1

ncbi_submitter: IGS


ncbi_assembly_name: freshwater MAG --- Loclat_bin-19178

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_country: Russia: Kemerovo Oblast; Kuzbass

ncbi_isolation_source: coal

ncbi_organism_name: Brockia lithotrophica

ncbi_submitter: Research Center of Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Brockia;s__Brockia lithotrophica


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Russia

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium sp. VKM Ac-1817D

ncbi_strain_identifiers: VKM Ac-1817D

ncbi_submitter: Center of Innovations and Technologies Biologically active compounds and their applications


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium