ncbi_country: USA: FL; Vaca Key Marker 48

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Mycobacterium sp. CnD-18-1

ncbi_submitter: Meyer Microbes Lab


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Alpinimonas psychrophila

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: Belgium

ncbi_organism_name: Serratia symbiotica

ncbi_strain_identifiers: Pl-LLN

ncbi_submitter: Universite catholique de Louvain


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium dolichotidis

ncbi_submitter: University of Parma


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA:Washington State; Hot Lake

ncbi_isolation_source: phototrophic microbial mat in Hot Lake; a shallow MgSO4 dominated salt lake

ncbi_organism_name: Prosthecochloris sp. HL-130-GSB

ncbi_submitter: The Pennsylvania State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus durans


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H35283

ncbi_submitter: Broad Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM270ASi

ncbi_submitter: Washington University


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0244

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus W55451


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Singapore: Singapore General Hospital

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: China: Tibetans

ncbi_isolation_source: feces from diarrhoeal outpatients

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_isolation_source: soil or river water

ncbi_organism_name: Sporosarcina psychrophila

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Amycolatopsis sp. NPDC101161

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: QLD7.1

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Nigeria

ncbi_isolation_source: chicken

ncbi_strain_identifiers: KS 6

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-m-378

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_country: China:Henan; Ruzhou

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: seawater from oxygen minimum zone

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0094

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Asaia prunellae JCM 25354

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-823

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_submitter: Uniformed Services University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sporosarcina sp. 179-K 3D1 HS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;x__unclassified Sporosarcina;s__Sporosarcina sp. 179-K 3D1 HS


ncbi_assembly_name: Escherichia coli strain 20AR0734

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIFESP


ncbi_organism_name: Candidatus Poriferisodalaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptomyces koelreuteriae

ncbi_submitter: BGI Research


ncbi_strain_identifiers: NNEc 2960

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx21319

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Montana State University


ncbi_country: Italy: Milano

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: Greece: Athens

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: leg

ncbi_submitter: The Affiliated Hospital of Chengde Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MHB BASRAH

ncbi_submitter: Basrah University


ncbi_country: Thailand:Rayong; Samet Island

ncbi_isolation_source: Decaying marine alga

ncbi_organism_name: Alkalibacterium putridalgicola

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Marinomonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Texas; College Station

ncbi_isolation_source: guttural pouch lavage fluid

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Guatemala

ncbi_organism_name: Shigella sonnei


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_submitter: University of Sao Paulo


ncbi_country: Hungary: Godollo

ncbi_isolation_source: overheated manure compost

ncbi_organism_name: Thermobifida cellulosilytica TB100

ncbi_submitter: Seqomics Ltd


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Cronobacter turicensis


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: urine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antioquia


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: BIOPHYT


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Chryseobacterium sp. Marseille-Q3244

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Sao Paulo; Campinas

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-1111

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_organism_name: Aulosira sp. ZfuVER01

ncbi_submitter: LANGEBIO


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Republic of the Congo

ncbi_organism_name: Maridesulfovibrio bastinii DSM 16055

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Pork

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: CVUAS 11260

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR503

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus agalactiae GB00893

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Kazakhstan: Kostanay Region

ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_strain_identifiers: RCAM 1026

ncbi_submitter: ARRIAM


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Nitrospiraceae bacterium


ncbi_organism_name: Blautia sp. HCN-20427

ncbi_submitter: Seoul National University


ncbi_country: Zaire

ncbi_isolation_source: Belgian Congo

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Viet Nam: Khanh Hoa

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Massilia sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Sau 95

ncbi_strain_identifiers: Sau 95

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus Sau 95


ncbi_organism_name: Vibrio tarriae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Sudan

ncbi_organism_name: Brucella abortus F6/05-3


ncbi_country: Indonesia

ncbi_isolation_source: rhizosphere area

ncbi_organism_name: Streptomyces sp. GMR22

ncbi_submitter: Indonesian Institute of Sciences


ncbi_organism_name: Acinetobacter pittii


ncbi_country: France: Lille

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Thailand: Kanchanaburi Province

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: DS-16780;Manu ancestor SIT523

ncbi_submitter: Mahidol University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zymo Research Corporation


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Dubosiella newyorkensis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Methylomirabilia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;x__unclassified Candidatus Methylomirabilia;s__Candidatus Methylomirabilia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Tamil Nadu Agricultural University


ncbi_assembly_name: freshwater MAG --- KR1_bin-0078

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: SponGES


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais


ncbi_country: China: Guangdong

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W85807

ncbi_submitter: Broad Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Miami


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: gut

ncbi_organism_name: Apilactobacillus timberlakei

ncbi_submitter: University of California, Riverside


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Universita degli Studi di bari


ncbi_organism_name: uncultured Streptomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: vegetables

ncbi_submitter: Shandong university


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Surface seawater of Malvarrosa

ncbi_organism_name: Falsiruegeria mediterranea M17

ncbi_strain_identifiers: CECT 7615

ncbi_submitter: UVEG


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: Oral microbiome

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Staphylococcus aureus M1286

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_organism_name: Phocaeicola acetigenes

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology, KRIBB


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_J_6

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_country: Netherlands: Delft

ncbi_isolation_source: bovine rumen in xylose fermenting enrichment culture

ncbi_organism_name: Citrobacter pasteurii

ncbi_submitter: SIAM


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX7

ncbi_submitter: University of Minnesota


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: liver

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Thailand

ncbi_isolation_source: respiratory

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalicatena fissicatena

ncbi_submitter: University of Chicago


ncbi_organism_name: Pediococcus pentosaceus


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: New England Biolabs


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Saccharibacillus brassicae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0164R

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-143

ncbi_submitter: JCVI


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Actinobacillus minor

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: ICRISAT campus in Hyderabad

ncbi_isolation_source: compost [ENVO:00002170]

ncbi_organism_name: Streptomyces sp. CAI-68

ncbi_submitter: ICRISAT


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Roseivirga sp.

ncbi_submitter: Academia Sinica


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Phuket

ncbi_isolation_source: sputum

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_isolation_source: human gut


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Brucella neotomae 5K33


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1036938

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Oxford


ncbi_country: Sri Lanka: Awissawella

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Yakult Central Institute


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Flavilitoribacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kingella denitrificans


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium 1,231,502

ncbi_submitter: Broad Institute


ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Egypt: Tanta

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_isolate: STB-H

ncbi_organism_name: Mycobacterium canettii CIPT 140070013

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070013


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Limosilactobacillus sp.


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella denticola

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Enterorhabdus sp. NM05_H27

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antioquia


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_assembly_name: freshwater MAG --- B-2_bin-586

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Nitratireductor sp. StC3

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: USA

ncbi_organism_name: Streptococcus agalactiae SGBS021

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Streptococcus agalactiae BSU174

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Shewanella sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Deferribacteres bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Achromobacter sp. 413638

ncbi_submitter: Universidad de Buenos Aires


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Leptospira kirschneri

ncbi_submitter: AGROSAVIA


ncbi_organism_name: uncultured Granulicella sp.


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Wits University


ncbi_organism_name: Klebsiella sp. R64

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWC2_61_19

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWC2_61_19


ncbi_country: Mexico: Mazatlan

ncbi_isolation_source: External lesion

ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: CAIM 1508

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Zhanjiang Bay

ncbi_isolation_source: sediments

ncbi_organism_name: Gordonia hongkongensis

ncbi_submitter: College of Coastal Agricultural Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Biotechnology Institute of UNAM


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC004981

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: IMG-taxon 2585428075 annotated assembly

ncbi_organism_name: Succinivibrio dextrinosolvens DSM 3072

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Klebsiella sp. CN_Kp098

ncbi_submitter: Max Rubner-Institut


ncbi_country: China

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_country: Algeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Henriciella sp.


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: Ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Egypt

ncbi_isolation_source: Desert soil

ncbi_organism_name: Streptomyces sp. DH20

ncbi_submitter: Ain Shams University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhizobiales bacterium YIM 77505

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__unclassified Hyphomicrobiales;s__Rhizobiales bacterium YIM 77505


ncbi_organism_name: Streptococcus agalactiae LMG 15092

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Paraguay

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Salmonella sp. 2267

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Shandong

ncbi_organism_name: Proteus terrae subsp. cibarius


ncbi_organism_name: Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Sweden

ncbi_isolation_source: abscess

ncbi_organism_name: Mycobacterium tuberculosis BTB07-327

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Zhejiang university


ncbi_country: Germany

ncbi_isolation_source: stomach content

ncbi_organism_name: Clostridium sp. ZBS18

ncbi_submitter: KULeuven


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: South Korea: Shrimp farms

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Streptomyces benahoarensis

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Candidatus Contendobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;x__unclassified Candidatus Contendobacter;s__Candidatus Contendobacter sp.


ncbi_organism_name: bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_country: China: Beijing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: kidney

ncbi_organism_name: Mycobacterium tuberculosis 1821ADB41

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Escherichia coli 3.4870

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Japanese tripe stew

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: NIHS


ncbi_assembly_name: Labrenzia sp. Alg231_36

ncbi_isolate: Labrenzia sp. Alg231_36

ncbi_isolation_source: sea water

ncbi_organism_name: Labrenzia sp. Alg231-36

ncbi_strain_identifiers: Labrenzia sp. Alg231_36

ncbi_submitter: Elham Karimi


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Candidatus Nitrobium versatile

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Carboxydothermus islandicus

ncbi_strain_identifiers: SET IS-9

ncbi_submitter: Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_39_19


ncbi_country: USA: New York City

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_organism_name: Flavobacterium sp. ASV13

ncbi_strain_identifiers: Fl

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Fibrobacter sp. UBA3718

ncbi_submitter: University of Queensland


ncbi_organism_name: Armatimonadia bacterium

ncbi_submitter: University of Iowa


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: University of Pavia


ncbi_organism_name: Candidatus Macondimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Marinilactibacillus psychrotolerans

ncbi_submitter: Agroscope


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Paracoccus yeei

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- VK2_bin-1242

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridiales bacterium VE202-08

ncbi_submitter: The University of Tokyo


ncbi_submitter: University of Florida


ncbi_assembly_name: Rumen uncultured genome RUG11186

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Poland: Bialystok

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Absconditabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__Candidatus Absconditabacteria bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Belgium

ncbi_isolation_source: Creamy cheese sample 1

ncbi_organism_name: Clostridium sp. RO3

ncbi_submitter: KULeuven


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG13725

ncbi_organism_name: Candidatus Proelusimicrobium bovinum


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Empedobacter sp. UBA5528

ncbi_submitter: University of Queensland


ncbi_country: Poland: Wroclaw

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas chlororaphis


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zoonosis Science Center


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Yale University


ncbi_assembly_name: freshwater MAG --- MJ120827B_bin-285

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B8D3D

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: colon

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Leptotrichia rugosa

ncbi_submitter: Hebei North University


ncbi_organism_name: Marinomonas foliarum

ncbi_strain_identifiers: CECT 7731


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Hiroshima University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M17027

ncbi_submitter: Broad Institute


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S13

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: University of Calgary


ncbi_country: Kenya

ncbi_isolation_source: MMUST Wastewater treatment plant

ncbi_organism_name: Escherichia coli

ncbi_submitter: MMUST biological


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: Plant Pathology and Entomology, Kagoshima Institute for Agricultural Development


ncbi_isolate: Fecal samples

ncbi_isolation_source: Lahore

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: EMG


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21259


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Kazakhstan: West Kazakhstan; Akzhaik district

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_organism_name: Acinetobacter variabilis


ncbi_organism_name: Streptococcus vestibularis


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Lysobacteraceae bacterium PS02304

ncbi_submitter: Penn State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Rumen uncultured genome RUG11734

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas sp. FSL R10-0765

ncbi_submitter: Cornell University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bangladesh

ncbi_isolation_source: Chicken breast meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bangladesh Agricultural University (BAU)


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKVH

ncbi_submitter: NHGRI/NIH


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: urine

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella sp. SJTUF14178

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_isolation_source: Waste water treatment plant

ncbi_organism_name: Citrobacter sp. W2

ncbi_submitter: Shandong University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brevibacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Salmonella sp. 2020_661

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus group sp. MYBK15-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK15-2


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Pretoria


ncbi_organism_name: Minisyncoccales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;s__Minisyncoccales bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Alistipes finegoldii


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Bacillus cereus group sp. BceL112

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL112


ncbi_isolate: AOP22_C1_surf _bin _6

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: AOP22_C1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Escherichia coli KTE137

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Atlantibacter subterraneus

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_submitter: Unique Biotech Limited


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Lunds Universitet

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: milk

ncbi_submitter: University of Liege


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai Ocean University


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Japan:Hokkaido; Sapporo; Hokkaido University; Ono pond

ncbi_isolation_source: pond water

ncbi_organism_name: Comamonadaceae bacterium OS-1

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina baltica

ncbi_submitter: University of Queensland


ncbi_organism_name: Microbacterium plantarum

ncbi_submitter: AGES


ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Uppsala University


ncbi_country: Spain: Barcelona

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-524

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: Thailand

ncbi_isolation_source: fermented bamboo

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2173

ncbi_submitter: Brigham Young University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 31 E 5

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 31 E 5


ncbi_organism_name: Escherichia coli

ncbi_submitter: Genomik Solidaritas Indonesia


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Sphingobium chlorophenolicum L-1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Streptococcus agalactiae FSL S3-442

ncbi_submitter: The J. Craig Venter Institute


ncbi_assembly_name: Hugonella massiliensis

ncbi_organism_name: Hugonella massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: Broodstock gonads of great scallop (Pecten maximus) maintained in a hatchery

ncbi_organism_name: Sinobacterium norvegicum

ncbi_strain_identifiers: type strain;CECT 8267

ncbi_submitter: University of Valencia, Spain


ncbi_organism_name: Pontiella sp.

ncbi_submitter: University of Montana


ncbi_country: China: Zhuhai

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Jinan University


ncbi_organism_name: Arthrobacter sp. 1P10PA

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Glutamicibacter protophormiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC048521


ncbi_isolation_source: water

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Haryana

ncbi_isolation_source: Cow milk

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: CCUG 806

ncbi_organism_name: Neisseria subflava

ncbi_strain_identifiers: CCUG 806

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Enterococcus durans

ncbi_strain_identifiers: FDAARGOS 1437

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMC Utrecht


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. OF05-2BH

ncbi_submitter: BGI


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Ewingella sp. AOP9-I1-14

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Arcicella sp.

ncbi_submitter: EPFL


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: China: Jiu Long Road; Hefei

ncbi_isolation_source: pit mud

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Anhui University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Balneola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-650

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Greece

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0402

ncbi_submitter: Texas A&M University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Lebanon: Kaslik

ncbi_organism_name: Escherichia coli

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_organism_name: Legionella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Salmonella enterica CVM N37938-SQ v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangzhou

ncbi_isolation_source: plant

ncbi_organism_name: Phycicoccus endophyticus

ncbi_submitter: Research Center for Medicine & Biology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter sp. Dm-44

ncbi_submitter: Cornell University


ncbi_country: USA: WA

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: University of Washington


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Guangdong Ocean University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-3850

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: food from white pepper outbreak

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen;x__Salmonella enterica subsp. enterica serovar Rissen str. 150


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Andersenbacteria bacterium RIFCSPHIGHO2_12_FULL_46_9


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: rectal swab

ncbi_submitter: Monash University


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: MIT

ncbi_isolation_source: human stomach

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: MIT


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: King City; CA

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Parke; Davis & Co.

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces fragilis

ncbi_submitter: Harvard University


ncbi_organism_name: Streptomyces sp. NPDC005303

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: South Dakota

ncbi_isolation_source: Intestinal content

ncbi_organism_name: Megasphaera sp. SW808

ncbi_submitter: South Dakota State University


ncbi_country: Cuba

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC8D

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ruegeria sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China

ncbi_isolation_source: environmental

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_country: Germany: Bremen

ncbi_isolation_source: continuous bioreactor NO_5109 inoculated with denitrifying sludge is constantly fed with nitric oxide and formate

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Max-Planck for Marine Microbiology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Ha'il


ncbi_organism_name: Mycolicibacterium sp. ND9-15

ncbi_submitter: Gyeongsang National University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Zhejiang University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Salmonella enterica CVM 43846 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Minesota

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leucobacter sp. MMO-39

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_isolation_source: Dairy fermentation

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudonocardiaceae bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolation_source: Garden Soil

ncbi_organism_name: Promicromonospora citrea

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Shewanella sp. JNE10-2

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Chonnam National University


ncbi_country: Zimbabwe

ncbi_organism_name: Brucella abortus F1/06 B1

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus F1/06 B1


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paenibacillus apiarius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Alameda County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: Russia: Moscow

ncbi_isolation_source: Intestine of patients with Crohn s disease

ncbi_submitter: RIPCM


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Peru: slaughterhouse in Iquitos

ncbi_organism_name: Leptospira santarosai str. CBC1416

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: China Aricultural University


ncbi_country: Ireland

ncbi_isolation_source: Envirnoment

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 48.E.08


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom:Scotland

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Mexico: Cuernavaca Morelos

ncbi_isolation_source: nodules

ncbi_organism_name: Rhizobium grahamii

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_organism_name: Microbispora sp. NPDC046933

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_02_FULL_41_11


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Helcococcus sp. KG196

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus safensis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Stenotrophomonas sp. NPDC077659


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: bacterium CG2_30_40_12

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Streptococcus ruminicola

ncbi_submitter: Chungnam national university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7744

ncbi_submitter: University of Queensland


ncbi_country: Ukraine

ncbi_isolation_source: Perianal swab

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Ponticoccus sp. SC6-36

ncbi_submitter: Shantou University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Clostridium sp.


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Photobacterium sp. GJ3

ncbi_submitter: Jeju National University