ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: CA

ncbi_genome_representation: full

ncbi_organism_name: Listeria innocua

ncbi_submitter: North Carolina State University


ncbi_country: USA: Georgia

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus haemolyticus M21127

ncbi_submitter: Meningitis and Vaccine Preventable Diseases Branch, Centers for Disease Control and Prevention


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0258

ncbi_submitter: Broad Institute


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Selenomonas sputigena

ncbi_submitter: EMG


gtdb_representative: t

ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_level: Complete Genome

ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Lysinibacillus pakistanensis

ncbi_refseq_category: reference genome

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


gtdb_type_species_of_genus: t

ncbi_country: Russia: Vologda region

ncbi_organism_name: Humisphaera borealis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella sp. FJ201301

ncbi_submitter: Fujian Medical University


ncbi_country: Antarctica: Scott Base

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Sphingomonas sp. Ant20

ncbi_submitter: University of Pretoria


ncbi_organism_name: Actinotignum timonense


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Congzhengia sp.


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Morganella morganii

ncbi_submitter: Weifang People's Hospital


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Falsochrobactrum ovis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella sp. C3238

ncbi_submitter: Sichuan University


ncbi_organism_name: Ructibacterium sp.


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Methylobacterium oryzisoli

ncbi_submitter: Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Rubrivivax sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: New Zealand

ncbi_organism_name: Mesorhizobium erdmanii USDA 3471

ncbi_strain_identifiers: USDA 3471

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: China: Jiangsu Province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pyramidobacter sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes J165

ncbi_submitter: JCVI


ncbi_assembly_name: freshwater MAG --- Ja1_bin-4066

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolate: Psychrobacter cryohalolentis K5

ncbi_isolation_source: ice core

ncbi_organism_name: Psychrobacter cryohalolentis

ncbi_strain_identifiers: Psychrobacter cryohalolentis K5

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Uberlandia


ncbi_country: Chile

ncbi_isolation_source: franklin gull (Leucophaeus pipixcan)

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_assembly_level: Chromosome

ncbi_country: Tanzania: Bagamoyo

ncbi_isolation_source: marine sediment

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Marian University College


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: acne affected area on cheek of male with moderate acne

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_submitter: Christian Medical College


ncbi_country: USA: CA

ncbi_isolation_source: gazella slender horned feces

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Chlamydia sp. 32-24

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;x__unclassified Chlamydia;s__Chlamydia sp. 32-24


ncbi_country: China

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Hunan Agricultural University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Pararge aegeria


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Schaalia odontolytica


ncbi_organism_name: Comamonadaceae bacterium


ncbi_assembly_name: IMG-taxon 2693429875 annotated assembly

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Enterobacter soli

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: Canada: Ontario

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Zhejiang Sci-Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada

ncbi_isolation_source: coleslaw

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4b str. 81-0861


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Mycobacterium tuberculosis 10

ncbi_submitter: BGI Research Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Madagascar: Toliara

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Columbicola hoogstraali

ncbi_submitter: University of Liverpool


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Mexico: Oaxaca

ncbi_isolation_source: stem

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Cornell University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human skin

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: NIH/NHGRI


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Adolfo Lopez Mateos dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: air sac

ncbi_submitter: FAPESP


ncbi_isolation_source: E. Sharpe; NRRL

ncbi_organism_name: Streptomyces sp. NRRL F-6676

ncbi_strain_identifiers: NRRL F-6676

ncbi_submitter: University of Illinois


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Alteromonas oceani

ncbi_submitter: Xiamen University


ncbi_country: Russia: Arkhangelsk

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Coleofasciculus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: lung

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: SHANGHAI VETERINARY RESEARCH INSTITUTE CHINESE ACADEMY OF AGRICULTURAL SCIENCES


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: Norway

ncbi_organism_name: Escherichia coli

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: anaerobic digester

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__unclassified Verrucomicrobiia;s__Verrucomicrobia subdivision 3 bacterium UBA3939


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parvibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_organism_name: bacterium

ncbi_submitter: Academia Sinica


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: Limnochordia bacterium


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: NIDDK, NIH


ncbi_organism_name: Streptomyces sp. NPDC057244

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Streptomyces sp. CA-142005

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: Candidatus Wallacebacter cryptica

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Wallacebacteriaceae;g__Candidatus Wallacebacter;s__Candidatus Wallacebacter cryptica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Wallacebacteriaceae;g__Candidatus Wallacebacter;s__Candidatus Wallacebacter cryptica


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: URMITE


ncbi_country: China: Shenzhen

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: BGI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: Changshu Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger excrementigallinarum


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Salmonella sp. NW1068

ncbi_submitter: Sichuan University


ncbi_country: China

ncbi_isolation_source: Yogurt

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Psychroflexus maritimus

ncbi_submitter: Shandong University


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG248

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: India: Puttaparthi

ncbi_isolation_source: vitreous fluid

ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: Endophthalmitis

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m1-1

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m1-1


ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Hong Kong

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Poland: Warsaw

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_strain_identifiers: KKP 998

ncbi_submitter: Prof. Waclaw Dabrowski Institute of Agriculture and Food Biotechnology


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Graduate School at Shenzhen, Tsinghua University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Lentisphaera sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: South Korea: Jinju

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: South Africa: Hlabisa

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0048

ncbi_submitter: Broad Institute


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus ATCC 8482

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus;x__Phocaeicola vulgatus ATCC 8482


ncbi_organism_name: Salmonella sp. ZJHZ21_0024

ncbi_submitter: Zhejiang university


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Thermomonas alba

ncbi_strain_identifiers: SYSU G04536

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Streptomyces abikoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: the Baykal lake; Irkutsk region

ncbi_isolation_source: water

ncbi_organism_name: Rhodococcus erythropolis

ncbi_strain_identifiers: IEGM 487

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: ground beef

ncbi_organism_name: Escherichia coli 93.0056

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7754

ncbi_submitter: University of Queensland


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: Germany

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp. FB-6

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. FB-6


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: China

ncbi_isolation_source: Waste water treatment plant

ncbi_organism_name: Citrobacter sp. W6

ncbi_submitter: Shandong University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Chelatococcus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Agrococcus chionoecetis

ncbi_submitter: Pukyong National University


ncbi_organism_name: Nocardia abscessus

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Ndongobacter massiliensis

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Ndongobacter;s__Ndongobacter massiliensis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: feces


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thermaerobacter marianensis

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Thermaerobacter;s__Thermaerobacter marianensis


ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01994

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_organism_name: Micromonospora sp. NBC_00821

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Salmonella enterica CVM N38944-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Stenotrophomonas bentonitica


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Endomicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Wuhan

ncbi_organism_name: Glutamicibacter mysorens

ncbi_submitter: National Biopesticide Engineering Technology Research Center, Hubei Academy of Agricultural Sciences


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2771

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Maribacter sp. HS

ncbi_strain_identifiers: HS

ncbi_submitter: Huaqiao University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus mundtii

ncbi_strain_identifiers: Dm

ncbi_submitter: China Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Escherichia coli O111:NM str. K6722

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6722


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Iowa


ncbi_country: USA: Seattle

ncbi_isolation_source: blood

ncbi_organism_name: Mycolicibacterium porcinum

ncbi_submitter: UW


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Egypt: Red Sea; Ras Mohamed; Sinai

ncbi_organism_name: Actinokineospora spheciospongiae

ncbi_submitter: University of Wuerzburg


ncbi_country: Australia: Brisbane

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Oregon

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of Hawaii


ncbi_country: Japan

ncbi_isolation_source: Acne vulgaris

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Tokyo University of Pharmacy and Life Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus sp. FSL W8-1268

ncbi_submitter: Penn State


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: UIUC


ncbi_country: USA: WA

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Washington


ncbi_country: Malaysia

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_organism_name: Flavobacterium sediminilitoris

ncbi_submitter: Korea Research Institute of Biomedical Science


ncbi_isolation_source: human milk

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Fungus Growing Termite

ncbi_organism_name: Streptomyces sp. SID4925

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Guangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Finland

ncbi_isolation_source: fermented milk product

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: LcA

ncbi_submitter: University of Helsinki


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guiyang

ncbi_organism_name: Streptomyces sp. GZWMJZ-114

ncbi_submitter: Ocean University of China


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Arthrobacter gallicola

ncbi_submitter: Quadram Institutte


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Chicago


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: food

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AF19-22AC

ncbi_submitter: BGI


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_assembly_name: Bacillus clausii TIL-28S Complete genome

ncbi_organism_name: Shouchella clausii

ncbi_submitter: JSS College of Pharmacy, JSS Academy of Higher Education and Research


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kribbella sp. NBC_01484

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Campylobacter sp. CH186

ncbi_submitter: University of Padova


ncbi_country: China: Fankou; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: South china normal university


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: tertiary hospital; surgery

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Deferribacterales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.


ncbi_isolate: metabat2_coassembly_bwa.831 MAG

ncbi_organism_name: Alistipes sp. CHKCI003

ncbi_strain_identifiers: metabat2_coassembly_bwa.831 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolate: Patient #52

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #52

ncbi_submitter: sapienza university


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: China: Zhejiang

ncbi_isolation_source: bile

ncbi_organism_name: Providencia zhijiangensis

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_assembly_name: IMG-taxon 2623620512 annotated assembly

ncbi_organism_name: Prevotella communis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF27-12AA

ncbi_submitter: BGI


ncbi_assembly_name: Rumen uncultured genome RUG12012

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_assembly_name: Rumen uncultured genome RUG14049

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: CRC RESIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Wuhan

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_country: Russia: Moscow

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Halanaerobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Salmonella sp. NW638

ncbi_submitter: Sichuan University


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Streptomyces wuyuanensis

ncbi_submitter: BGI Research


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA5766

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5766


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Ja1_bin-3439

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: freshwater MAG --- Loc090907-1m_bin-040


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Italy: Aosta

ncbi_isolation_source: cheese

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Shigella sp. FC6524

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: China: Henan; Zhumadian

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: ZMD

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0510

ncbi_submitter: The University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Asian vegetable

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: USA: Tattnall Co. GA

ncbi_isolation_source: leaf

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: digestive tract (UBERON:0001555); intestine (UBERON:0000160)

ncbi_organism_name: Bacteroides sp. UBA3406

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Jinan

ncbi_isolation_source: blood

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Campania

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Brazil: Araras

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SRCAMB


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Quadrisphaera sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Zhejiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: deep seawater in Mariana Trench

ncbi_organism_name: Euzebyella marina

ncbi_submitter: Ocean University of China


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Xuzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Curtobacterium sp. B8

ncbi_submitter: Kazusa DNA Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Staphylococcus sp. HMSC072E01

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (1um filter)

ncbi_organism_name: Vibrio tasmaniensis 1F-267

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: EPFL


ncbi_organism_name: Woeseia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 25m

ncbi_organism_name: Erythrobacter sp. REDSEA-S41_B1

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Sao Jose da Bela Vista

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_country: USA: Chicago

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Costa Rica: La Selva Biological Station

ncbi_isolation_source: Atta cephalotes fungus garden

ncbi_organism_name: Paraburkholderia sp. Ac-20342

ncbi_submitter: UW-Madison


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-14

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: Caecum


ncbi_country: Kenya

ncbi_organism_name: Bifidobacterium sp. UBA4633

ncbi_submitter: University of Queensland


ncbi_country: Romania: Iasi

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Euphemobacter frigidus

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Auribacterota;c__Candidatus Erginobacteria;o__Candidatus Erginobacterales;f__Candidatus Erginobacteraceae;g__Candidatus Euphemobacter;s__Candidatus Euphemobacter frigidus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;c__Candidatus Erginobacteria;o__Candidatus Erginobacterales;f__Candidatus Erginobacteraceae;g__Candidatus Euphemobacter;s__Candidatus Euphemobacter frigidus


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Slovenia

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus group sp. N8

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N8


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolate: AOP35_03H_surf _bin _37

ncbi_strain_identifiers: AOP35_03H_surf _bin _37

ncbi_submitter: Genoscope


ncbi_organism_name: Caulobacter sp. DWR1-3-2b1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Maribacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP35_04H_surf _bin _26

ncbi_organism_name: Brachybacterium sp.

ncbi_strain_identifiers: AOP35_04H_surf _bin _26


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Micromonospora sp. NPDC051006

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: uncultured Roseobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Moraxellaceae bacterium


ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Anderseniibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWD2_33_33

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWD2_33_33


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0001

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerocolumna aminovalerica


ncbi_organism_name: uncultured Acidobacteriota bacterium


ncbi_isolation_source: water sample

ncbi_organism_name: Salipiger sp. D13

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyanobacteriota bacterium


ncbi_organism_name: Streptomyces sp. NBC_00539

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acutalibacter muris


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus faecis

ncbi_submitter: Shandong University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: serum

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: China: Shandong

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_country: USA

ncbi_organism_name: Anaplasma phagocytophilum

ncbi_strain_identifiers: HGE1 mutant

ncbi_submitter: IGS


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0967

ncbi_submitter: Broad Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Changsha province

ncbi_isolation_source: sludge in the sediment pool of a pig factory using tetracycline antibiotics as long-term feed additive

ncbi_organism_name: Pandoraea sp. XY-2

ncbi_submitter: Central South University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella sp. 98703

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter sputorum

ncbi_submitter: Yangzhou university


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1578

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear


ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1855R


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium CG_4_10_14_0_8_um_filter_39_42


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Sweden: Norrkoeping

ncbi_isolation_source: Raw water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pirellula sp.

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_country: Malaysia: Johor

ncbi_isolation_source: palm oil wastes

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Volar forearm Swab

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Paenibacillus phoenicis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Wuhan

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: WRAIR-Africa


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC34C02

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: sputum induced

ncbi_organism_name: Rothia sp. HMSC065D02

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC065D02


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Anaerorhabdus sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Frozen peas

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Rumen uncultured genome RUG14036

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rossellomorea sp. FM04394

ncbi_submitter: Guangdong Detection Center of Microbiology


ncbi_country: China: Beijing

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Aquihabitans sp.

ncbi_submitter: EPFL


ncbi_country: USA: California

ncbi_organism_name: Caballeronia sp. Lep1P3

ncbi_submitter: University of Texas at Arlington


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: China: Hunan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces cathayae

ncbi_strain_identifiers: HUAS 5

ncbi_submitter: Hunan University of Arts and Science


ncbi_country: Italy

ncbi_isolation_source: pets

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Bologna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Greater Toronto Area

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Streptomyces sp. NPDC085466

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pedobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_country: Belgium: Ghent

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Wageningen UR


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: tree barks

ncbi_organism_name: Sporolactobacillus shoreae

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Acinetobacter sp.


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Mesorhizobium sp. ORM16

ncbi_submitter: Mohammed V University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC048604

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Moraxella sp. CTOTU48268


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Stanford University


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Citrobacter sp. Ce006

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Labilibaculum sp.

ncbi_submitter: University of Southern California


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: department of plant and microbial biology


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Nan Jing

ncbi_isolation_source: Blood culture medium

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Levilactobacillus cerevisiae

ncbi_submitter: INRAE


ncbi_organism_name: Streptomyces sp. FT05W

ncbi_submitter: Guizhou University


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Hebei province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter agilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica


ncbi_assembly_name: R-75596 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_country: China: Huizhou

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Parvimonas sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Mexico

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0332R

ncbi_submitter: Broad Institute


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV218

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Treponema sp. UBA1233

ncbi_submitter: University of Queensland


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Candidatus Choladousia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;x__unclassified Candidatus Choladousia;s__Candidatus Choladousia sp.


ncbi_country: China

ncbi_isolation_source: beef

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA1027


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: nankai university


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA7893


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enorma burkinafasonensis


ncbi_country: South Korea: miryang

ncbi_isolation_source: stem

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Highland Agriculture Research Institute


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: NanJing University


ncbi_country: China: Hunan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG11388

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Holophaga sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides zhangwenhongii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces viridifaciens

ncbi_submitter: KAIST


ncbi_country: Austria

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Pseudomonas syringae pv. persicae

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. persicae


ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_country: USA

ncbi_isolation_source: pig lungs

ncbi_organism_name: Glaesserella parasuis HPS11

ncbi_submitter: Newport Laboratories, A Sanofi company


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: Caecum


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: seawater from oxygen minimum zone

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Providencia vermicola

ncbi_submitter: University of Oxford


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Pseudomonas sp. O64

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas sp. QD3

ncbi_submitter: University of British Columbia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1052

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-412-O03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas juntendi


ncbi_country: Viet Nam

ncbi_isolation_source: stomach

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Arizona


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: Nitrospira sp. RBC001

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_strain_identifiers: Nitrospira sp. RBC001

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: France: Paris

ncbi_isolation_source: midstream urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Anhui; Luan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Montreal

ncbi_isolation_source: infected lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Guinea fowl meat

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: Ethiopia

ncbi_isolation_source: injera fermented dough

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Brigham Young University


ncbi_country: Sweden

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Uppsala University


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Shigella sp. FC6521

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Spain

ncbi_isolation_source: sputum

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College