ncbi_organism_name: uncultured Sphingobium sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Chattahoochee River

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


gtdb_representative: t

ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus albus

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1096

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: PA

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_isolate: Staphylococcus

ncbi_organism_name: Staphylococcus roterodami

ncbi_strain_identifiers: Staphylococcus

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SC


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus OCMM6037

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2617270782 annotated assembly

ncbi_organism_name: Planococcus glaciei

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_01439

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Streptomyces sp. SID4915

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Hangzhou

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: zhejiang University


ncbi_country: USA

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiaceae bacterium R5-34

ncbi_submitter: Shandong university


ncbi_organism_name: Candidatus Cloacimonas acidaminovorans

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans


ncbi_country: Japan

ncbi_isolation_source: meadow soil

ncbi_organism_name: Actinoallomurus iriomotensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerofilum faecale

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_strain_identifiers: ICMP 4328

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. atropurpurea


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_assembly_name: Rumen uncultured genome RUG10681

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Aeromonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Quebec

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Bilophila sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Brazil: Patrocinio Paulista

ncbi_isolation_source: water

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: China: Huizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Cysteiniphilum marinum

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Human saliva

ncbi_organism_name: Prevotella melaninogenica


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease Swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: NCTR/FDA


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Lake Ontario

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: University of Chicago


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. IBSBF 2806

ncbi_strain_identifiers: IBSBF 2806

ncbi_submitter: UFSCar


ncbi_organism_name: Enterobacter soli

ncbi_submitter: Southwest Medical University


ncbi_organism_name: uncultured Mediterranea sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_organism_name: Mesorhizobium sp. M0589

ncbi_submitter: Washington State University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: France: Dieulouard

ncbi_isolation_source: Rhizoplane of Brassica napus

ncbi_organism_name: Pseudomonas brassicacearum subsp. brassicacearum

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alcaligenes faecalis


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus suis 12814

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: Blood

ncbi_submitter: University College Cork


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Tsinghua University


ncbi_isolation_source: caecum

ncbi_organism_name: Drancourtella sp. An57

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical sample: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: naresuan university


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Syntrophothermus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_submitter: Chouaib Doukkali University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Erwinia sp. AnSW2-5

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aureimonas pseudogalii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Streptomyces sp. JW3

ncbi_submitter: Euromed University of Fes


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: New Zealand: Te Puke

ncbi_isolation_source: kiwifruit orchard

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_strain_identifiers: Psa NZ-65

ncbi_submitter: New Zealand Institute for Plant and Food Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter sp. NIPH1876

ncbi_submitter: UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO-CCG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_assembly_name: freshwater MAG --- Ki3-D1_bin-0497

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Collimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: uncultured Nitrosomonadaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 34 E 7

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 34 E 7


ncbi_country: India

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli TA271

ncbi_submitter: Broad Institute


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. ADAK21

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Onthovicinus;s__Candidatus Onthovicinus excrementipullorum


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_organism_name: Acinetobacter sp. YH12112

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Germany

ncbi_organism_name: Salipaludibacillus agaradhaerens

ncbi_refseq_category: reference genome

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: China

ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: XV

ncbi_submitter: Tianjin university of science and technology


ncbi_country: France: Besancon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: USA: West Virginia

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: France

ncbi_organism_name: Variovorax sp. 38R

ncbi_submitter: INRA


ncbi_assembly_name: Rumen uncultured genome RUG13206

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Alcanivorax nanhaiticus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21178


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Micromonospora matsumotoense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus capitis CR01

ncbi_submitter: BGI


ncbi_country: South Africa: Mpumalanga

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 228

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea nosoerga

ncbi_submitter: LM-UGent


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Dourados

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: uncultured Caldilineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Denmark

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella viridescens

ncbi_submitter: Lactobio A/S


ncbi_country: Australia

ncbi_isolation_source: Drinking Water System

ncbi_organism_name: Legionella waltersii

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Nonomuraea sp. NPDC047897

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Vibrio sp. Vb2531

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: IRRI


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Antarctica: Lake Vanda; McMurdo Dry Valleys

ncbi_isolation_source: oligotrophic lake microbial mat

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: University of California Davis

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: sand

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Gunma University


ncbi_country: Israel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPC 46

ncbi_submitter: TLVMC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_submitter: Central Public Health Laboratories

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Israel: Evolution Canyon; south-facing slope

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus swezeyi

ncbi_submitter: NCAUR-ARS-USDA


ncbi_submitter: national health research institutes


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: University of Karachi, Karachi, Pakistan


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_submitter: University of Wyoming


ncbi_organism_name: Anaerovoracaceae bacterium SGI.174

ncbi_submitter: University of Manitoba


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Morganella morganii


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolate: AOP43_C2_coeur _bin _17

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP43_C2_coeur _bin _17

ncbi_submitter: Genoscope


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS AMP-66

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS AMP-66

ncbi_submitter: The University Hong Kong


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Lebanon

ncbi_isolation_source: Fresh Produce 4

ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Carnobacterium sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1566

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: France: Lyon

ncbi_isolation_source: urine

ncbi_submitter: Anses


ncbi_organism_name: Gluconobacter japonicus NBRC 3271

ncbi_strain_identifiers: NBRC 3271

ncbi_submitter: Tokyo University of Agriculture


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: Blood

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus aureus M1056


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 216

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 4204

ncbi_submitter: University of Calgary


ncbi_country: Colombia

ncbi_isolation_source: Organ

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Sweden

ncbi_organism_name: Glaesserella parasuis D74

ncbi_submitter: Iowa State University


ncbi_country: South Korea: Jeongseon-gun

ncbi_organism_name: Microvirga sp.

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Vibrio toranzoniae

ncbi_strain_identifiers: CECT 7225

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Quadram Institutte


ncbi_country: USA: UPMC Children s Hospital of Pittsburgh; Pittsburgh; Pennsylvania

ncbi_isolation_source: laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: A909 sCas9revertant

ncbi_submitter: University of Pittsburgh


ncbi_country: Russia: Lake Baykal

ncbi_isolation_source: water

ncbi_organism_name: Tychonema sp. BBK16

ncbi_submitter: Limnological Institute, Siberian Branch of the Russian Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Day2-5_bin-016

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Henan

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane factory

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China:Qinghai-Tibet Plateau

ncbi_isolation_source: Glycerine

ncbi_organism_name: Streptococcus marmotae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Callosa d en Sarria (Alicante)

ncbi_isolation_source: petioles and stem

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: XF-ACTORS


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (small; 1 micrometer filter)

ncbi_organism_name: Vibrio cyclitrophicus 1F273

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: San Gabriel

ncbi_isolation_source: midribs of infected leaves

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: University of California


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: Shellfish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Endomicrobium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA190

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC090073

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidobacteriota bacterium DAS_389

ncbi_submitter: Stellenbosch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteriota bacterium DAS_389


ncbi_organism_name: Veillonella sp.


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Netherlands:Reeuwijkse Lakes

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Cylindrospermopsis raciborskii Cr2010

ncbi_submitter: University of Tennessee

ncbi_type_material_designation: assembly designated as reftype


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1367

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute of Public Health NIH - National Research Institute


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Klebsiella sp. 102123

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_assembly_level: Chromosome

ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Lapidilactobacillus gannanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Ecuador

ncbi_isolation_source: urine

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: UAEM


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Aggregatibacter segnis

ncbi_submitter: Aarhus University


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: NanJing University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Pammene fasciana


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptomyces sp. LN704

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: National Institute of Biotechnology


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Massachusetts

ncbi_organism_name: Pedobacter sp. ASV28

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: Candidatus Gallimonas merdigallinarum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdigallinarum


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Flavobacterium sp. FlaQc-28

ncbi_submitter: Universite Laval


ncbi_organism_name: Corynebacterium sp. L4757

ncbi_submitter: Shanxi Eye Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Umea_bin-03904

ncbi_submitter: BILS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Sphaerochaeta sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Streptococcus oralis subsp. dentisani

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Leadbetterella sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada

ncbi_isolation_source: coleslaw

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Ireland: Cork

ncbi_isolation_source: Bovine Tongue

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: Teagasc Food research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Huashan Hospital


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Cuba

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Russia: Biysky District; Altai Krai

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli O1:HNT

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Nanjing University


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio sp. Isolate23

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: wwtp active sludge

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Hubei University of Technology


ncbi_isolation_source: CSF or blood culture

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: Upper Respiratory Tract

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Skin wound of burn human patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Forsyth Institute


ncbi_country: South Korea

ncbi_isolation_source: sewage water

ncbi_organism_name: Stenotrophomonas daejeonensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Kingella denitrificans

ncbi_submitter: EMG


gtdb_type_species_of_genus: t

ncbi_organism_name: Micrococcus luteus NCTC 2665

ncbi_strain_identifiers: ATCC 4698

ncbi_submitter: Signature Science, LLC


ncbi_country: USA: DC

ncbi_isolation_source: Urine catheter

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Mexico: Mexico city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Beijing

ncbi_isolation_source: egg surface

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Chile: Puerto Montt

ncbi_isolation_source: human with diarrhea assosiated with seafood cunsumption; Hospital General

ncbi_submitter: Omics Solutions


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Jasper Ridge Biological Preserve; Stanford; California

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella nectarea

ncbi_submitter: Complutense University of Madrid


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0060

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek feta cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria sp. HKCCD7239

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6034


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Norway

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Brucella suis F8/06-1


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Hong Kong; Shek Wu Hui wastewater treatment plant

ncbi_isolation_source: sludge

ncbi_organism_name: Clostridiales bacterium UBA2028


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: rhizosphere soil culture M46

ncbi_organism_name: Leucobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD04028

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Sphingomonas sp. LY54

ncbi_submitter: China CDC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Agroscope


ncbi_country: Georgia: Ninotsminda

ncbi_organism_name: Yersinia pestis 3067

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 3067


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Dialister sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridioides difficile CD131

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Streptomyces sp. NPDC058657

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SAMIN0017120-Comprehensive Genomic Analysis of Mixta calida Isolated from the Faecal Sample of a Tuberculosis Patient in India

ncbi_organism_name: Mixta calida

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gardnerella sp. KA00255

ncbi_submitter: Fred Hutch


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: CORNELL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Photorhabdus bodei

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Mexico

ncbi_isolation_source: Swine Farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Escherichia sp.


ncbi_organism_name: Segatella copri


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Hudson Valley; NY

ncbi_isolation_source: stream

ncbi_organism_name: Chitinimonas sp. BJB300

ncbi_submitter: GCAT-SEEK


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus V14/01

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus V14/01


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_organism_name: Stenotrophomonas pictorum JCM 9942

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Mycobacterium pseudokansasii

ncbi_submitter: CHUV-UNIL


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kenya

ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: Center of Molecular Biosciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Boston

ncbi_organism_name: Finegoldia sp. BIOML-A3

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Prochlorococcus marinus XMU1403

ncbi_submitter: Xiamen University


ncbi_country: Switzerland: Basel city

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Verrucomicrobia bacterium UBA6375

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6375


ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: BGI


ncbi_country: South Korea:Yellow Sea beach

ncbi_organism_name: Pseudomonas putida B001

ncbi_submitter: Chonnam National University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: Ecuador

ncbi_isolation_source: urine

ncbi_submitter: Universidad Tecnica de Ambato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Neopsylla mana Wagn

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: human gut

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sediminis

ncbi_submitter: Nanjing Forestry University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Microbacterium sp. TPU 3598

ncbi_submitter: Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean

ncbi_isolation_source: South Pacific Ocean

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Klebsiella oxytoca


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tissue

ncbi_organism_name: Staphylococcus aureus M1074

ncbi_submitter: Broad Institute


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_organism_name: Moraxella sp. CTOTU47579


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_organism_name: Schlesneria sp.

ncbi_submitter: EPFL


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolate: STPDE

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Germany

ncbi_isolation_source: nose swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: St. Louis; Missori

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: Vanuatu

ncbi_isolation_source: cutaneous ulcer

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Alberta


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Tepidisphaeraceae bacterium


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 118362

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Mesorhizobium sp.


ncbi_organism_name: Acinetobacter geminorum

ncbi_submitter: Universidad de Leon


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: Broiler

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120005


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Brazil

ncbi_isolation_source: chicken meat from slaughterhouse

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: Switzerland: Zurich University Hospital

ncbi_isolation_source: Human blood culture

ncbi_organism_name: Corynebacterium coyleae

ncbi_submitter: Bielefeld University


ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Taylorella equigenitalis

ncbi_strain_identifiers: CAPM 6606

ncbi_submitter: Masaryk University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Azospirillales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany: Dresden

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Thermosynechococcus sp. PKX95

ncbi_submitter: Academia Sinica


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_country: Bangladesh

ncbi_isolation_source: sandy soil from Cox s Bazar; Bangladesh

ncbi_organism_name: Nonomuraea coxensis DSM 45129

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Lacrimispora sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter bacterium nBUS_44


ncbi_organism_name: Bermanella sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: Teagasc


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Synechococcus sp. W60.1

ncbi_submitter: University of Montana


ncbi_organism_name: Pedobacter sp. AW31-3R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphaerotilus montanus

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Acidobacteriota bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Acetobacter fabarum


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: LBAE B1

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptococcus pneumoniae R6M2-PG

ncbi_submitter: Université Laval


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Germany

ncbi_isolation_source: Turkey meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Blood cultures

ncbi_organism_name: Cardiobacterium hominis

ncbi_submitter: CHUV-UNIL


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Thiomicrorhabdus sp. Kp2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Microbial mat material

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Maasstad Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120581


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_41_107


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Nitrospirales bacterium


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of South Africa


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli ED1a

ncbi_submitter: Genoscope


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudoalteromonas sp. M8

ncbi_submitter: Chinese Academy of Fishery Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: CAU


ncbi_country: Brazil: Cachoeirinha

ncbi_isolation_source: Rice cultivar BR-IRGA 409

ncbi_organism_name: Paenibacillus riograndensis

ncbi_submitter: UFRGS


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: China University of Mining and Technology, Beijing


ncbi_organism_name: Candidatus Sabulitectum sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;g__Candidatus Sabulitectum;x__unclassified Candidatus Sabulitectum;s__Candidatus Sabulitectum sp.


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: Temple University


ncbi_country: Italy

ncbi_isolation_source: BAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Chitinophagales bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Phycisphaerales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Denmark

ncbi_isolation_source: throat swab

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_organism_name: Clostridioides difficile P23

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Soil

ncbi_organism_name: Pandoraea soli

ncbi_submitter: LM-UGent


ncbi_organism_name: Micromonospora olivasterospora

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB07-206

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Toho university


ncbi_country: Switzerland: Basel district

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Micropruina sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Rothia aeria

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_assembly_name: TPHSE

ncbi_organism_name: Terrisporobacter petrolearius

ncbi_strain_identifiers: HSE

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Ireland

ncbi_isolation_source: Drain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_country: Sri Lanka:Anuradhapura

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Rajarata University of Sri lanka


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Parvularculaceae bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Bradyrhizobium sp. HKCCYLS3013

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: bacterium

ncbi_submitter: University of Trento


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Acetobacteraceae bacterium


ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Shanghai Institute of Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Luoyang

ncbi_isolation_source: soil of karst cave

ncbi_organism_name: Antribacter gilvus

ncbi_submitter: Sun Yat-sen University


ncbi_country: Tanzania

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: JiangSu

ncbi_isolation_source: Suppuration

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: sediment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: bovine feces

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni ATCC 33560


ncbi_country: Thailand: Kalasin

ncbi_isolation_source: Som fak (Thai fermented fish)

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: IL

ncbi_isolation_source: organic soy

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: USA: Alaska

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: EMG


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: CAU


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacteriaceae bacterium UBA6954


ncbi_organism_name: Escherichia coli BL21(DE3)

ncbi_submitter: Austrian Center for Biopharmaceutical Technology