ncbi_submitter: Center for Microbial Communities


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: United Kingdom

ncbi_genome_representation: full

ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: not provided

ncbi_organism_name: Corynebacterium durum

ncbi_submitter: EMG


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: haikou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_level: Scaffold

ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Qatar University


ncbi_country: USA: Eugene

ncbi_isolation_source: indoor dust from athletic faciility hallway

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: Northwestern University


ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C488_07

ncbi_submitter: IGS


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: lake water

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;x__Bacteroidaceae incertae sedis;g__Candidatus Gallibacteroides;s__Candidatus Gallibacteroides avistercoris


gtdb_representative: t

ncbi_country: South Korea:Seoamcheon stream

ncbi_isolation_source: freshwater environment

ncbi_organism_name: Flavobacterium aquiphilum

ncbi_refseq_category: reference genome

ncbi_submitter: Inha Univ.

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: Kenya Marine And Fisheries Research Institute


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Microbiology and Infectious Diseases, Nara Medical University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Zhejiang

ncbi_organism_name: Pelomonas sp. V22

ncbi_submitter: China University of Petroleum(Beijing)


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: France: Institut Pasteur Lyon

ncbi_isolation_source: Rabbit liver

ncbi_organism_name: Neisseria leonii

ncbi_submitter: Institut Pasteur


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4042

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC007872

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Noviherbaspirillum sp.

ncbi_submitter: EMG


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_assembly_level: Chromosome

ncbi_organism_name: Hyphococcus formosus

ncbi_submitter: Shandong Univerity


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loc080925-8-8m_bin-099

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Spirochaetota bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Anaerolineae bacterium


ncbi_country: Bolivia: La Paz; Agricultural area Mecapaca

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Lu'an People's Hospital


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Enterobacter cloacae JD6301

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea: Coast of Jeju

ncbi_organism_name: Microterricola gilva


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Maribacter aquivivus

ncbi_submitter: marine college, shandong university


ncbi_country: India: Himachal Pradesh

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus sp. KS1

ncbi_submitter: CSIR- INSTITUTE OF MICROBIAL TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. KS1


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Rani Lakshmi Bai Central Agricultural University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_country: Germany

ncbi_isolation_source: River sediment; Germany; river Saale

ncbi_organism_name: Desulfitobacterium hafniense TCP-A

ncbi_strain_identifiers: TCP-A

ncbi_submitter: JGI


ncbi_country: China: Gaocheng county

ncbi_isolation_source: black leg symptoms of Solanum tuberosum

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Agricultural University of Hebei


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Alistipes timonensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Escherichia coli CVM N34543PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N34543PS

ncbi_submitter: FDA


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_country: India: Delhi

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. AF18-15LB

ncbi_submitter: BGI


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Deferrisomatales bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Niallia sp. FSL R7-0271

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. FSL R7-0271


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of Helsinki


ncbi_country: USA: Florida

ncbi_isolation_source: sugarcane

ncbi_organism_name: Xanthomonas albilineans

ncbi_submitter: CIRAD


ncbi_organism_name: uncultured Centipeda sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Bacterial and Parasitic Diseases Research Division, National Institute of Animal Health


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Science, Chulalongkorn University


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2011C-3216


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Lecce

ncbi_isolation_source: Hospital setting

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Foggia


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Coprobacillaceae bacterium CR2/5/TPMF4

ncbi_submitter: Institute of Animal Physiology nad Genetics


ncbi_country: Russia: Eastern Siberia; Chita oblast; lake Shuluutai-Ekhe-Torom

ncbi_organism_name: Roseococcus suduntuyensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Viet Nam: Da Lat

ncbi_isolation_source: Commercial plant nursery

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Treponema berlinense

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG11190

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_country: USA: Texas; Falfurrias

ncbi_isolation_source: abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland

ncbi_isolation_source: Deep Tissue

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C157_11

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Xichang Colleage


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA6078


ncbi_submitter: University of Vienna, Austria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Parachlamydiaceae;g__Candidatus Protochlamydia;s__Candidatus Protochlamydia amoebophila;x__Candidatus Protochlamydia amoebophila UWE25


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus cereus group sp. BceL184

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL184


ncbi_organism_name: uncultured Rhabdothermincola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Sphingopyxis sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Lund University


ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Caulobacterales bacterium


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jiangnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Thiomargarita sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Spain: Santander

ncbi_isolation_source: Pharyngeal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul;x__Salmonella enterica subsp. enterica serovar Saintpaul str. 9712


ncbi_country: France: (64 department)

ncbi_isolation_source: Organ

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Spain:Santa Pola

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: Centre for Genomic Regulation (CRG)


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1065

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: colon biopsy

ncbi_organism_name: Brachyspira aalborgi

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Cedecea sp. FDAARGOS_727

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2634166276 annotated assembly

ncbi_organism_name: Crystallibacter crystallopoietes

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Deep sea water

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus sp. FSL W8-1207

ncbi_submitter: Penn State


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleH

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sphingomonadales bacterium 28-56-43


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-249

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Amphibiibacter pelophylacis

ncbi_submitter: University of Coimbra


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Campylobacter jejuni subsp. jejuni S3

ncbi_submitter: The University of Arizona, Department of Veterinary Science & Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni S3


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfatator sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii TG22148

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: CAU


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-442-B03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_organism_name: uncultured Chthonomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: EMG


ncbi_country: China: Futian

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: Lactuca sativa var. capitata (red lettuce)

ncbi_submitter: Max Rubner-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: New Zealand

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 2417

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_country: USA: Pennsylvania; Scalp Level

ncbi_isolation_source: biofilm

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acinetobacter sp. 25977_1

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 25977_1


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: stool

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Xiamen University


ncbi_country: Russia:Yaroslavl Region

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: P.G. Demidov Yaroslavl State University


ncbi_organism_name: Litorilinea sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Salmonella enterica CVM N45928 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Legs

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Planococcus maritimus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_country: Denmark: Randers; Randers Regnskov

ncbi_organism_name: Testudinibacter aquarius

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AM30-16

ncbi_submitter: BGI


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: The Research Institute at Nationwide Children's Hospital


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Bradyrhizobium sp. S3.9.1


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Somov Institute of Epidemiology and Microbiology


ncbi_organism_name: Salmonella sp. NW1188

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Trueperella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alteromonas australica

ncbi_submitter: EMG


ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bdellovibrionales bacterium


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: India: Chilika Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Streptomyces chitinivorans

ncbi_submitter: KIIT University


ncbi_organism_name: Symbiobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India

ncbi_isolation_source: avian heart (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: California

ncbi_submitter: USDA-ARS


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-2 day 1480

ncbi_organism_name: Moorella sp. (in: firmicutes)

ncbi_submitter: The Ohio State University


ncbi_country: Colombia

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0149


ncbi_organism_name: Brachyspiraceae bacterium


ncbi_isolation_source: throat

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nocardia fusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pirellulales bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_isolation_source: Eye swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: University of Bern


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_country: Switzerland

ncbi_isolation_source: Infloran capsule

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: CHUV-UNIL


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF7451

ncbi_submitter: Nofima


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella sp. SH14S936

ncbi_submitter: Zhejiang university


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Auburn University


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: China

ncbi_isolation_source: bed sheet

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-1391

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Japan:Ibaraki; Tsukuba

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Fengtai Region for Disease Control and Prevention, Beijing,China


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Rhodobacter sp.

ncbi_submitter: EMG


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Acidaminococcus timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome hRUG888

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG13208

ncbi_isolation_source: cattle rumen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Treponema succinifaciens

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Queensland


ncbi_submitter: University of Wuerzburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 6850


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. SAL04173

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella sp. NW1236

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Addis Ababa University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces coeruleorubidus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Nanosyncoccus sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__environmental samples;s__uncultured Candidatus Nanosyncoccus sp.


ncbi_organism_name: Pseudomonas sp. NPDC087346


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Kitasatospora sp. NPDC059599


ncbi_organism_name: Candidatus Spongiisociaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Halobacillus sp. H74

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: ballast tank

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: OM182 bacterium

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Cornell University


ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Marche; Ancona

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Fermentimonas sp.


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Psychrobacillus sp. MER TA 171

ncbi_strain_identifiers: MER TA 171

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Psychrobacillus;x__unclassified Psychrobacillus;s__Psychrobacillus sp. MER TA 171


ncbi_organism_name: Bacteroides uniformis


ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_organism_name: Escherichia coli 27A

ncbi_submitter: University Medical Center Utrecht


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_country: China: Heilongjiang

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Harbin Medical University


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: bed

ncbi_submitter: University of KwaZulu Natal


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_country: New Zealand

ncbi_isolation_source: twig from a walnut tree

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_strain_identifiers: CFBP 2528

ncbi_submitter: INRA


ncbi_organism_name: Campylobacter jejuni subsp. doylei

ncbi_submitter: SC


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Nannocystaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: University of Pavia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Daeguia caeni

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_country: Brazil

ncbi_isolation_source: biological fluid or tissue

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flaviramulus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3100

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: caecum

ncbi_organism_name: Gemmiger sp. An120

ncbi_submitter: Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp. An120


ncbi_country: Russia: Belgorod

ncbi_isolation_source: Inpatient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBCH RAN


ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR111

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 993520

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SC


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira gomenensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_organism_name: Bacteriovoracaceae bacterium UBA6582

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter gengyunqii

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Oscillibacter acetigenes

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Antarctica

ncbi_organism_name: Dietzia psychralcaliphila

ncbi_submitter: stazione zoologica


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Fusobacterium varium

ncbi_submitter: BGI-Shenzhen


ncbi_country: Sweden

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2651870317 annotated assembly

ncbi_organism_name: Acinetobacter sp. DSM 11652

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_country: China: Beijing

ncbi_isolation_source: Anus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC061E04

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC061E04


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: Pasta Salad with Mayonnaise

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: GA

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: USA: MA

ncbi_isolation_source: shrimp

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Sponge: Aplysina aerophoba

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paenibacillus alkaliterrae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: BIM B-492D

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Aristaeellaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: JAMSTEC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: unknown

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium LLD_019

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital ICU

ncbi_organism_name: Superficieibacter electus

ncbi_submitter: Washington University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: internal stem tissue

ncbi_organism_name: Pseudomonas sp. RIT-PI-o

ncbi_strain_identifiers: RIT-PI-o

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: ProBone


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: sheep meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China

ncbi_isolation_source: Human sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: New York Presbyterian Queens Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli 90.0039

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: North Carolina

ncbi_isolation_source: Ceca

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: NC State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paludibacterium paludis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Actinomycetaceae bacterium zg-1166


ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Caecum


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Buchnera aphidicola (Schlechtendalia chinensis)

ncbi_submitter: Shanxi University


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 1997-4


ncbi_isolation_source: handrail

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NIH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Pseudomonas putida GB-1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Wolinella succinogenes

ncbi_submitter: Fudan University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus pallens ATCC BAA-351

ncbi_strain_identifiers: ATCC BAA-351

ncbi_submitter: Broad Institute


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 4DZ3-17B2


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Aquarickettsia rohweri

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Zhangzhou Squirrel Snake Farm

ncbi_organism_name: Morganella morganii

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A29

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. Ks17

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Bile

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Mycolicibacterium vanbaalenii PYR-1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Granulicatella adiacens

ncbi_submitter: University of California, Berkeley


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: cow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zoonosis Science Center


ncbi_isolation_source: mouse gut metagenome


ncbi_country: South Korea: Gimcheon

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1297


ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: sewage treatment plant

ncbi_organism_name: Desulfolutivibrio sulfoxidireducens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolation_source: Urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNIFESP - CRT DST/Aids SP


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0047

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Vibrio thalassae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Uniformispora flossi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_organism_name: Paenirhodobacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Flavobacteriales bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Streptomyces sp. rh254

ncbi_submitter: Cornell University


ncbi_organism_name: Blautia sp. HCP3S3_H10_1


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Saint-Louis Hospital


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Divison of Bacterial Diseases, Centers for Disease Control


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 308

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 5079

ncbi_submitter: University of Calgary


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: US Food and Drug Administration


ncbi_country: South Korea

ncbi_isolation_source: 10 years old rusty ginseng root

ncbi_organism_name: Sphingomonas panacis

ncbi_submitter: Deok Chun Yang


ncbi_country: Germany: Muenster

ncbi_isolation_source: anoractal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University Hospital Muenster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Sulfurovum sp. UBA1140

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Pectobacterium wasabiae

ncbi_strain_identifiers: NCPPB 3702

ncbi_submitter: Food and Environment Research Agency


ncbi_country: Australia: Sydney

ncbi_isolation_source: Ensuite 7/8

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: Fitzroy River; Rockhampton

ncbi_isolation_source: freshwater

ncbi_organism_name: Dolichospermum circinale CS-534/05

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Japan:Fukuoka; Munakata

ncbi_organism_name: Ureibacillus thermosphaericus

ncbi_submitter: Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Streptomyces asoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_isolate: GDFS

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: GDFS

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Broiler leg meat

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_organism_name: Paenibacillus melissococcoides

ncbi_submitter: Agroscope


ncbi_country: Israel: Solar Lake

ncbi_isolation_source: water

ncbi_organism_name: Geitlerinema sp. PCC 9228

ncbi_submitter: University of Michigan


ncbi_country: China: Zhejiang

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Sel(aux star)

ncbi_submitter: ETH Zurich


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Weihai

ncbi_organism_name: Oceaniglobus trochenteri

ncbi_submitter: Shandong Univesity


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: Thailand: Sing Buri Province

ncbi_isolation_source: gills of Hemibagrus wyckioides

ncbi_organism_name: Neochlamydia sp. AcF65

ncbi_submitter: University of Vienna


ncbi_country: Brazil

ncbi_isolation_source: Raw kafta

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Lishizhenia tianjinensis


ncbi_organism_name: Mycolicibacterium sp. 120266

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Atlantic Ocean

ncbi_isolation_source: pentadecane enrichment inoculated with seawater

ncbi_organism_name: Thalassolituus oleivorans

ncbi_submitter: University of Califronia


ncbi_country: South Korea

ncbi_isolation_source: cyanobaceterial bloom lake

ncbi_organism_name: Caenimonas aquaedulcis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Spain

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Russia: Dagestan

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_submitter: USDA


ncbi_isolation_source: caecum

ncbi_organism_name: Faecalicoccus acidiformans

ncbi_submitter: Veterinary Research Institute


ncbi_country: France: Vosges

ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia aspalathi

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Geothrix sp.

ncbi_submitter: EPFL


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pork salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Germany: Kiel

ncbi_isolation_source: waste water

ncbi_organism_name: Listeria kieliensis

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung ZIEL


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-197

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_country: Germany

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC1C

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Fusobacterium nucleatum


ncbi_country: USA: Lyons; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Norway: Skien

ncbi_isolation_source: eye

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Laboratory for Microbial Dynamics (LaMDa)


ncbi_organism_name: Streptomyces scopuliridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Svalbard: Ny-Alesund

ncbi_isolation_source: Pond soil

ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: MicroArctic


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point C

ncbi_organism_name: Stygiobacter sp. RIFOXYC12_FULL_38_8

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_assembly_name: freshwater MAG --- Umea3_bin-1609

ncbi_organism_name: uncultured Legionella sp.

ncbi_submitter: BILS


ncbi_organism_name: Pseudochelatococcus lubricantis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Streptosporangium subroseum

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group