ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 20 PSU in greater than .8 micron size fraction

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Clemson University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: South Africa

ncbi_genome_representation: full

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: USDA APHIS VS NVSL


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Contig

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EBI


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF17-13

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_level: Chromosome

ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: CSF


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Paenibacillus dendritiformis

ncbi_strain_identifiers: CRN 20

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: Lentilactobacillus kefiri CIRM-BIA2556

ncbi_organism_name: Lentilactobacillus kefiri

ncbi_strain_identifiers: Lentilactobacillus kefiri CIRM-BIA2556

ncbi_submitter: INRAE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Iowa

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiohalobacter sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_representative: t

ncbi_organism_name: Paenibacillus sp. PL2-23

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


gtdb_type_species_of_genus: t

ncbi_organism_name: Heliophilum fasciatum

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Otitis media

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: skin; soft tissue infection

ncbi_submitter: SC


ncbi_organism_name: Saccharopolyspora hordei


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10614

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Antarctica: Barton Peninsular; King George Island

ncbi_isolation_source: soil

ncbi_organism_name: Pedobacter cryoconitis

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Czech Republic: Pribram

ncbi_organism_name: Acinetobacter modestus

ncbi_strain_identifiers: NIPH 236

ncbi_submitter: Broad Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2615840537 annotated assembly

ncbi_organism_name: Bacillus sp. bc15

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. bc15


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Boston

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_organism_name: Pseudomonas brassicae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: USA

ncbi_organism_name: Campylobacter coli

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_country: Senegal

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium terangae

ncbi_submitter: Medicago Hapmap Project


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_43_10


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: South Korea:Jeonnam

ncbi_isolation_source: freshwater of an artificial reservoir

ncbi_organism_name: Sphingomonas lutea

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: pustule

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Psychrobacter glaciei

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-1969

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Streptomyces sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC006641

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Microbacteriaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: India: Madhya Pradesh; Sehore; Padli

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: intraoperative swabs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL010121

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_organism_name: Pseudocalidococcus azoricus BACA0444

ncbi_submitter: University of Azores


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: surface swab

ncbi_organism_name: Sphingobium yanoikuyae


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Flavobacteriales bacterium UBA7612

ncbi_submitter: University of Queensland


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Japan: Kyoto

ncbi_isolation_source: activated sludge

ncbi_organism_name: Microbacterium sp. No. 7

ncbi_strain_identifiers: No. 7

ncbi_submitter: Kyoto Institute of Technology


ncbi_organism_name: Pseudothermotoga sp.


ncbi_country: China

ncbi_organism_name: Rothia sp. ZJ1223

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. ZJ1223


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: Aarhus University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM115

ncbi_submitter: IGS


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Prescottella equi

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: stem

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangxi University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Austria

ncbi_isolation_source: Industrial environment

ncbi_organism_name: Brucella intermedia

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Alicante


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Paralachnospira avium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira avium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira avium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Spain: Ria a Coruna

ncbi_isolation_source: hemolymph

ncbi_organism_name: Photobacterium sanguinicancri

ncbi_strain_identifiers: CAIM 1827

ncbi_submitter: CIAD, A.C.


ncbi_country: China: Xinjiang

ncbi_isolation_source: abortions

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Chinese Animal Health and Epidemiology Center


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: South Africa

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. 852002-51296_SCH5728562-b


ncbi_organism_name: Prevotella sp.


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Cuba

ncbi_isolation_source: genital ulcer

ncbi_organism_name: Treponema pallidum subsp. endemicum

ncbi_submitter: Masaryk University, Faculty of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: other

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Iowa; at Ames

ncbi_isolation_source: swine waste lagoon

ncbi_organism_name: Rhodocyclus purpureus

ncbi_strain_identifiers: DSM 168

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Clostridioides sp. ES-W-0017-02

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: oral cavity

ncbi_organism_name: Aggregatibacter aphrophilus ATCC 33389

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_country: Iran: Kermanshah

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas ogarae

ncbi_submitter: KU Leuven

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: BGI


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: FDA-CVM


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_country: Croatia

ncbi_isolation_source: Human; stool

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: urine

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_submitter: JCVI


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella boydii

ncbi_submitter: icddr,b


ncbi_country: Arctic Ocean

ncbi_isolation_source: Arctic Seawater

ncbi_organism_name: Rhodococcus sp. B7740

ncbi_submitter: Zhejiang Wanli University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. B7740


ncbi_country: USA: CA

ncbi_isolation_source: colon

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Nanjing University


ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01399

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01399


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 2 days after second rain event (91mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium 13_1_20CM_4_66_11


ncbi_organism_name: Afipia sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Actinomyces dentalis

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Thermodesulfobacteriota bacterium B35

ncbi_submitter: CNRS EMR6002


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Hickory Corners; Michigan

ncbi_isolation_source: leaf-associated phyllosphere

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Iowa State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan: Yokohama

ncbi_isolation_source: gut tissue

ncbi_organism_name: Lactobacillus panisapium

ncbi_submitter: University of Lausanne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya - University of Western Australia


ncbi_assembly_name: Lactobacillus equi DPC 6820

ncbi_country: Ireland

ncbi_isolation_source: Horse GIT

ncbi_organism_name: Ligilactobacillus equi DPC 6820

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: Streptomyces sp. PLK1-5

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: Anaerosacchariphilus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus GD2010-159

ncbi_submitter: Broad Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: PAMS

ncbi_submitter: Xi an Fifth Hospital


ncbi_organism_name: Candidatus Vondammii sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;g__Candidatus Vondammii;x__unclassified Candidatus Vondammii;s__Candidatus Vondammii sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Sphingobacterium sp.


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Vibrio sp. AND4

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__unclassified Vibrio harveyi group;s__Vibrio sp. AND4


ncbi_country: Colombia: Bogota

ncbi_organism_name: Providencia rettgeri


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: Eel tank water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: China: Xinjiang

ncbi_organism_name: Pontibacter aydingkolensis

ncbi_submitter: Dongguk University


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0032

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UKKnSpR

ncbi_submitter: TU Dresden


ncbi_organism_name: Acetivibrio sp.

ncbi_submitter: China Agricultural University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aedoeadaptatus coxii

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- VK2_bin-1807

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_isolation_source: Ascites

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: organic falls

ncbi_organism_name: Vibrio sp. Y42_MX_L11

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_assembly_name: freshwater MAG --- Day2-4_bin-025

ncbi_organism_name: uncultured Methylophilaceae bacterium


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Owenweeksia sp.


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Institute for Advanced Biosciences, Keio University


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee queen gut

ncbi_organism_name: Commensalibacter melissae

ncbi_submitter: University of Lausanne


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Dafeng

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Rhodococcus sp. Br-6

ncbi_submitter: Chiba University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. Br-6


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_country: Brazil

ncbi_isolation_source: Raw salad

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Vibrio sp. 1640

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Staphylococcus singaporensis

ncbi_submitter: National University Hospital


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Chile: Santiago

ncbi_isolation_source: blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: China

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: Medicago Hapmap Project


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Nitrincola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Defluviitaleaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Caproicibacter sp.

ncbi_submitter: The University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: DSM 492

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Arthrobacter sp. C9C5

ncbi_submitter: The Ohio State University


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0307

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: pig

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Yangzhou University


ncbi_assembly_name: IMG-taxon 2681812805 annotated assembly

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Thiomargarita sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: Northwest A&F University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bartonella sp. CL71SXKL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Rhodothermaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-278

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Armatimonadota bacterium

ncbi_strain_identifiers: new MAG-278

ncbi_submitter: Micoorganism


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 20763;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: Spain:Mallorca; Balearic Islands

ncbi_isolation_source: subsurface water sample

ncbi_organism_name: Pseudomonas aeruginosa P47

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: IMG-taxon 2590828823 annotated assembly

ncbi_organism_name: Rhodospirillales bacterium URHD0017

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Illinois

ncbi_isolation_source: a zoological facility

ncbi_organism_name: Campylobacter hyointestinalis

ncbi_submitter: University of Illinois Urbana-Champaign College of Veterinary Medicine


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: department of plant and microbial biology


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolate: metabat2_XCR1_HET_6747_bwa.56 MAG

ncbi_strain_identifiers: metabat2_XCR1_HET_6747_bwa.56 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Malaysia: Johor

ncbi_isolation_source: wound swab from ulcer

ncbi_submitter: Institute for medical research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada

ncbi_organism_name: Psychrilyobacter atlanticus DSM 19335

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: P079F I

ncbi_submitter: Imperial College London


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Ghana

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: ETH Zurich


ncbi_country: USA: TX

ncbi_isolation_source: other

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Bangladesh

ncbi_isolation_source: patient sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL/Melanie Blokesch


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: France

ncbi_submitter: Anses


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Yellowfin tuna-anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB22

ncbi_submitter: Soochow University


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_isolation_source: egg

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: feces from infant with NECII

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces albidoflavus

ncbi_strain_identifiers: NRRL F-5618

ncbi_submitter: University of Illinois


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Basurto University Hospital


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Candidatus Proelusimicrobium tauri

ncbi_submitter: University of Queensland


ncbi_organism_name: Gluconobacter thailandicus

ncbi_submitter: Henan University


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Germany: Berlin

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 230853

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 230853


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Ralstonia thomasii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Glycocaulis albus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Bacteroides sp. AR20

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guangdong

ncbi_isolation_source: vegetable

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Corynebacterium stationis


ncbi_country: USA: NY

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus DAR1276

ncbi_submitter: Broad Institute


ncbi_isolation_source: food


ncbi_assembly_name: Rumen uncultured genome RUG13013

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0372

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Kiel University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Paraiba

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Pharmacy - U. Porto


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Turneriella sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Portugal: Alcobaca

ncbi_isolation_source: ear

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0032


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Salmonella sp. NW69

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacillus sp. CB28A.1

ncbi_submitter: University of California, San Diego

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. CB28A.1


ncbi_organism_name: Zhongshania antarctica

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacillus cereus group sp. BCN65

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN65


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Marvinbryantia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ktedonobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium


ncbi_country: Thailand: Trang

ncbi_isolation_source: urine

ncbi_submitter: Prince of Songkla University


ncbi_country: Russia: Kaluga

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Taiwan

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: National Sun Yat-sen University


ncbi_country: Malaysia

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: University of Malaya


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Frigoribacterium sp. Leaf172

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Brucella abortus

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI


ncbi_isolation_source: rat gut

ncbi_organism_name: Lactococcus sp. UBA7128

ncbi_submitter: University of Queensland


ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: China: Anshun

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Guizhou University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Opitutaceae;x__unclassified Opitutaceae;s__Opitutaceae bacterium BACL24 MAG-120322-bin51


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P126P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acinetobacter vivianii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 45

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Fujian

ncbi_organism_name: Acinetobacter sp. YH12029


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Italy

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-02-H06B

ncbi_submitter: Arkin Lab


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. CST9

ncbi_submitter: Michigan Technological University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Actinokineospora alba

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Prevotella melaninogenica


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Region Zealand


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: Hangzhou

ncbi_isolation_source: bile

ncbi_submitter: China Agriculture University


ncbi_country: USA

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: The Ohio State University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG1_02_41_12


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Canada: Toronto

ncbi_isolation_source: Sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Vibrio campbellii ATCC BAA-1116

ncbi_strain_identifiers: BB120;ATCC BAA-1116

ncbi_submitter: The Vibrio harveyi Genome Sequencing Project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii ATCC BAA-1116


ncbi_country: Cuba: Pinar del Rio

ncbi_organism_name: Chroococcidiopsis cubana SAG 39.79

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: intestine tissue

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Collinsella sp. CAG:289

ncbi_submitter: DTU


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: ballast tank

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Shandong university


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Shenzhen

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter mori

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Canada: southern Alberta feedlot

ncbi_isolation_source: feeder lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125127

ncbi_submitter: Brigham Young University


ncbi_organism_name: Dissulfurispiraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Australia

ncbi_isolation_source: clinical

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_organism_name: uncultured Propionivibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Mariniphaga sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enorma massiliensis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: PMLO

ncbi_submitter: University of Turin


ncbi_organism_name: Streptomyces sp. NPDC086077

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands: Flevoland

ncbi_isolation_source: Potato rhizosphere

ncbi_organism_name: Pseudomonas sp. WCS374

ncbi_submitter: Utrecht University, Utrecht, NETHERLANDS


ncbi_isolate: Cupriavidus taiwanensis SWF 66324

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis SWF 66324

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: India

ncbi_isolation_source: TISSUE

ncbi_submitter: Christian Medical College


ncbi_country: Spain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: FT 98

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Streptomyces griseus subsp. griseus

ncbi_strain_identifiers: NRRL B-2621

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;s__Streptomyces griseus;sb__Streptomyces griseus subsp. griseus


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Mahidol University


ncbi_country: South Korea: Wanju-Gun

ncbi_organism_name: Anaerostipes faecalis

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus SAFR-032

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient C

ncbi_organism_name: Pluralibacter gergoviae


ncbi_isolation_source: Caecum


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Streptococcus agalactiae MRI Z1-024

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Vibrio harveyi


ncbi_country: Australia: Clermont; QLD


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. SS35

ncbi_submitter: MIT


ncbi_country: Tanzania: Dakawa

ncbi_organism_name: Pantoea sp. ARC270

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_organism_name: Candidatus Danuiimicrobium aquiferis

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Danuiimicrobium;s__Candidatus Danuiimicrobium aquiferis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Danuiimicrobium;s__Candidatus Danuiimicrobium aquiferis


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: China: Tibet

ncbi_isolation_source: Hippophae rhamnoides root soil actinomycetes

ncbi_organism_name: Nocardia sp. XZ_19_385

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: vagina

ncbi_organism_name: Bifidobacterium breve JCP7499

ncbi_submitter: Washington University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Brooklawnia sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Ireland

ncbi_isolation_source: feaces

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University College Cork


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Chongqing university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Uterus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Henan province

ncbi_isolation_source: bark

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Chryseobacterium sp. JUb44

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_country: France

ncbi_isolation_source: rotting apples

ncbi_organism_name: Providencia sp. JUb39

ncbi_submitter: University of Alabama


ncbi_organism_name: Thauera sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: University of Alaska Anchorage


ncbi_country: China: Guangxi

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Monash University


ncbi_submitter: North-West University


ncbi_organism_name: uncultured Oligoflexia bacterium

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Pseudomonadales bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Algeria: El-Tarf

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium canariense

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA: La Jolla; CA

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinomonas sp. SBI22

ncbi_submitter: Scripps Institution of Oceanography


ncbi_assembly_name: IMG-taxon 2636416175 annotated assembly

ncbi_organism_name: Onishia taeanensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Syria

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Medicago Hapmap Project


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Ohio State University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA4884

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Zurich


ncbi_country: Germany

ncbi_isolation_source: Urinary catheter

ncbi_submitter: SurvCARE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SCOPE


ncbi_country: Australia

ncbi_isolation_source: floor

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia sp. WS545

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: uncultured Pelagibacterales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hyphomonas sp. FCG-A18

ncbi_submitter: XIAMEN University


ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Nocardioides caricicola

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Spirochaetia bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pseudoporcinus

ncbi_submitter: UNIVERSITY OF CAMBRDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: Nigeria: Ibadan; Oyo State

ncbi_isolation_source: Fermented maize gruel

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Life and Earth Sciences Institute (Including Health and Agriculture), PAULESI


ncbi_organism_name: Bergeyella sp. RCAD1439

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Experimental Botanical Garden Goettingen

ncbi_isolation_source: compost soil

ncbi_organism_name: Pseudomonas ogarae

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Alistipes putredinis


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Yersinia pestis CMCC05013

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Germany: Forest near Ammerbach; Jena

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Saratov

ncbi_isolation_source: rizoplany potato varieties Nevsky at the beginning stage of forming tubers

ncbi_organism_name: Brucella cytisi

ncbi_submitter: Kazan Institute of Biochemistry and Biophysics RAS


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Empis tessellata


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Northeastern University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 216 (4-3042952)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 216 (4-3042952)


ncbi_country: Japan

ncbi_organism_name: Kluyvera georgiana

ncbi_submitter: Yonsei University


ncbi_country: Pakistan: Faisalabad

ncbi_submitter: Yangzhou University


ncbi_country: USA: Chicago

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTSA


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Bilophila sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: Pre-treated sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Colombia

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_assembly_name: IMG-taxon 2687453684 annotated assembly

ncbi_organism_name: Sphingomonas sp. YR710

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_isolation_source: Pterocarpus santalinus leaf

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human stool

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas sp.


ncbi_assembly_name: freshwater MAG --- AM_bin-3597

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus aureus M66407

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong: New Territories

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: New York City

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Columbia University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Nebraska

ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Hinthialibacterota;x__unclassified Candidatus Hinthialibacterota;s__Candidatus Hinthialibacteria bacterium OLB16


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Kocuria sp. CH-021

ncbi_submitter: Centro Integral de Microscopia Electronica (CIME - UNT - CONICET)


ncbi_submitter: MRSN BI Team


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; high temperature; high CO2

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. BA28

ncbi_submitter: Dong-Eui University


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Potato flake

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: Universite Catholique de Louvain


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: China: Suzhou

ncbi_organism_name: Blautia sp. MSJ-36

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: School of Biotechnology


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_organism_name: Salmonella sp. SKLX103958

ncbi_submitter: Zhejiang university