ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_assembly_level: Contig

ncbi_organism_name: Corynebacterium rouxii

ncbi_submitter: Fundacao Oswaldo Cruz


ncbi_assembly_level: Complete Genome

ncbi_country: United Kingdom: Sheffield

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: SC


ncbi_country: Serbia: Sirig

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_submitter: University of Exeter


ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: t

ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Austria: Innsbruck

ncbi_isolation_source: glacier s cryoconite

ncbi_organism_name: Pseudomonas sp. PAMC 25886

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Poultry environment

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: EaTS

ncbi_submitter: TUM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia albertii;x__Escherichia albertii NBRC 107761 = DSM 17582

ncbi_type_material_designation: assembly from type material


ncbi_country: Germany: Castle ruin Eutinger Tal; Eutingen im Gaeu

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. Isolate_45

ncbi_submitter: Leibniz-HKI


ncbi_country: Germany

ncbi_isolation_source: swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_country: USA

ncbi_organism_name: Snodgrassella communis

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: USA: Squaxin Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Granulosicoccus sp.

ncbi_submitter: University of Washington-Seattle


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: BGI-Shenzhen


ncbi_country: Russia: Nizhny Novgorod

ncbi_isolation_source: urogenital tract

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Blokhina Research Institute of Epidemiology and Microbiology, Nizhny Novgorod, Russia


ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Antarctica

ncbi_isolation_source: water column

ncbi_organism_name: Pseudoalteromonas sp. TAE79

ncbi_submitter: University of Florence


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Department of Bacteriology II, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium scardovii;x__Bifidobacterium scardovii JCM 12489 = DSM 13734


ncbi_organism_name: Saccharopolyspora hirsuta

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_submitter: Sichuan University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Shandong; Qingdao

ncbi_isolation_source: soil

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab back

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Ginsengibacter sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8875A

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: Mac and Cheese

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9065

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: Shellfish

ncbi_organism_name: Campylobacter sp. RKI_CA19_01122

ncbi_submitter: IFREMER


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_type_species_of_genus: t

ncbi_organism_name: Sphaerisporangium melleum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Phycisphaerales bacterium JB054

ncbi_submitter: JNTUH


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Arizona; Sonoran Desert

ncbi_isolate: SON bin9

ncbi_strain_identifiers: SON bin9

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Phytobacter sp. V91

ncbi_submitter: max planck institute for biology, tuebingen


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Armatimonadota bacterium


ncbi_organism_name: Shewanella sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1102

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: CIM:MAG 1102

ncbi_submitter: Mayo Clinic


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Tangshan City; Hebei Province

ncbi_isolation_source: roots

ncbi_organism_name: Rheinheimera tangshanensis

ncbi_submitter: Environment and Plant Protection Institute,Chinese Academy of Tropical Agricultural Sciences


ncbi_country: China: Yunnan; Machang village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_organism_name: Bacillus smithii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolate: labscale reactor_MAG21

ncbi_organism_name: Candidatus Saccharimonas sp.

ncbi_strain_identifiers: labscale reactor_MAG21

ncbi_submitter: European Union Horizon 2020 research and innovation programme

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__unclassified Candidatus Saccharimonas;s__Candidatus Saccharimonas sp.


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: cold seep

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Haemophilus parainfluenzae


ncbi_country: Qatar

ncbi_isolation_source: Retail Chicken Carcasse

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Pelagibacter sp. TMED64

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. TMED64


ncbi_country: USA

ncbi_isolation_source: ATCC Reference Strain

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: US Food and Drug Administration Office of Regulatory Affairs


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_country: Russia: Republic of Kalmykia

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG177

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus W25814

ncbi_submitter: Broad Institute


ncbi_organism_name: Anabaena minutissima FACHB-250

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2866550

ncbi_submitter: IGS


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R894;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: California

ncbi_isolation_source: aquarium

ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Chung-Ang university


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 83 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter sp. AOR01_HL

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Germany

ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Caproiciproducens sp.


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Luteimonas sp. TWI414

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: Rumen uncultured genome RUG14052

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: TCI Co., Ltd.


ncbi_organism_name: Moraxella sp.


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Shanghai

ncbi_isolation_source: raw milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Southwest University


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Copenhagen


ncbi_country: Sri Lanka: Anuradhpura

ncbi_isolation_source: Exorhizosphere rice

ncbi_organism_name: Pseudomonas oryzicola

ncbi_refseq_category: reference genome

ncbi_submitter: KU Leuven


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_submitter: South China Agricultural University


ncbi_country: Chile: Retiro; Maule

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Universidad Santo Tomas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Italy

ncbi_isolation_source: ice cream

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: animal manure

ncbi_organism_name: Acutalibacter sp. 1XD8-33

ncbi_submitter: Chinese Academy of Science


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_organism_name: Alicycliphilus denitrificans


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Algisphaera sp.

ncbi_submitter: Tsinghua University


ncbi_country: USA: Alameda; California; Pep s backyard; strawberry plants

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00654

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: AB

ncbi_isolation_source: lichen thallus

ncbi_organism_name: Nostoc sp. JL33

ncbi_submitter: University of Liege


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: SC


ncbi_isolation_source: traditional Korean food

ncbi_organism_name: Dietzia alimentaria 72

ncbi_submitter: Kyung Hee University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: University of Padova


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Salipiger sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. WMMC905

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Penn State


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S32

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.68

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_strain_identifiers: bin S2.68

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_submitter: Miguel Servet University Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Kenya

ncbi_organism_name: Bacillales bacterium UBA6449

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Streptomyces sp. NPDC001380

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAMchJs136i

ncbi_submitter: Washington University


ncbi_organism_name: Bacillus sp. FSL M8-0266

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0266


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Cuba: Santa Cruz del Norte

ncbi_isolation_source: Cloacal sample

ncbi_submitter: University of Bern


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;s__Candidatus Blochmannia vicinus (nom. nud.)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Pyramidobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: CLUE-TERRA


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: ENVO: 01000924(plumbing drain)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Kenya: Laikipia ranch

ncbi_isolation_source: milk of mastitis-infected camel

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Kenya Agricultural and Livestock Research Organisation


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus faecipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus faecipullorum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterobacteriaceae bacterium UBA1584

ncbi_submitter: University of Queensland


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Kingston University


ncbi_isolation_source: nasopharynx


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-3974

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_isolation_source: herbarium material of Anacystis montana

ncbi_organism_name: Calothrix sp. PCC 7103

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Calotrichaceae;g__Calothrix;x__unclassified Calothrix;s__Calothrix sp. PCC 7103


ncbi_submitter: Yonsei University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Prevotella dentalis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Macellibacteroides fermentans


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Paraperithous gnathaulax


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Yangzhou University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia luti

ncbi_submitter: University of Chicago


ncbi_country: Russia: Pushchino

ncbi_isolation_source: Silt of bottom sediments

ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: IBPM RAS


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Haryana; Gurugram Civil Hospital

ncbi_isolation_source: high vaginal swab

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Interdisciplinary Group for Advanced Research on Birth Outcomes – A DBT India Initiative (GARBH-Ini)


ncbi_country: China: Changchun

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus sp. RCBS9

ncbi_submitter: Jilin Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. RCBS9


ncbi_country: Portugal: Oeiras

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Instituto Gulbenkian Ciencia


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-1055

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Chile: Temuco

ncbi_isolation_source: Secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Candidatus Gemmiger stercoripullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger stercoripullorum


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-66

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SZAS TMP-66

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Thailand

ncbi_isolation_source: stems

ncbi_organism_name: Streptomyces oryzae

ncbi_submitter: KASETSART UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sultan Qaboos University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Neisseriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: SC


ncbi_isolation_source: benthal deposit

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: MD

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_assembly_level: Chromosome

ncbi_isolation_source: rotting apples

ncbi_organism_name: Enterobacter sp. JUb54

ncbi_submitter: University of Alabama


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Yosemite National Park; California

ncbi_organism_name: Luteibacter rhizovicinus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Candidatus Caenarcanales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;c__Vampirovibriophyceae;o__Candidatus Caenarcanales;x__unclassified Candidatus Caenarcanales;s__Candidatus Caenarcanales bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_genome_category: derived from single cell

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas fortuita

ncbi_submitter: FAFU


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Canada: Lake Hazen

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC087769


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium SL_1_1

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4488_9 depth 4-6 cm

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Rumen fluid

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus XMU1420

ncbi_submitter: China University of Geosciences


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Alcanivorax profundi

ncbi_submitter: EMG


ncbi_country: United Kingdom: London

ncbi_isolation_source: Periodontal pocket

ncbi_organism_name: Prevotella sp. oral taxon 820

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;x__unclassified Prevotella;s__Prevotella sp. oral taxon 820


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Lambdaproteobacteria;x__unclassified Candidatus Lambdaproteobacteria;s__Candidatus Lambdaproteobacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Russia

ncbi_isolation_source: compost

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudoramibacter alactolyticus


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia sp. MOD1-EC5449

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Brenneribacteriota;s__Candidatus Brennerbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_44_41


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-338

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Qinling Mountains

ncbi_isolation_source: roots

ncbi_organism_name: Paenibacillus qinlingensis

ncbi_submitter: Inner Mongolia University


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: USA: GA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Enterobacter kobei

ncbi_strain_identifiers: MER

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Denmark: Hellerup

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas sp. IB21

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Soochow University


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Phycisphaerales bacterium JB047

ncbi_submitter: JNTUH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Thailand

ncbi_submitter: Cardiff University


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: GM-anode biofilm

ncbi_organism_name: Rhodanobacteraceae bacterium UBA703

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0124R

ncbi_submitter: Broad Institute


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Streptomyces sp. SA3_actG

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 222


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Poland

ncbi_organism_name: Yersinia intermedia


ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_country: New Zealand

ncbi_organism_name: Campylobacter novaezeelandiae

ncbi_submitter: Massey University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock biobioreactor

ncbi_organism_name: Chryseobacterium sp. 39-10

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Endomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Collinsella sp.


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-460-02_S1_C2

ncbi_submitter: IGS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1044

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water from culvert

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: freshwater

ncbi_organism_name: Aquabacterium sp. UBA2148

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp. UBA2148


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: University of Guelph


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: USA: AK

ncbi_isolation_source: cloaca

ncbi_organism_name: Escherichia albertii

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Gouqi Island

ncbi_isolation_source: Sea weed

ncbi_organism_name: Peteryoungia algae

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Gimcheon

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Texas

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine

ncbi_organism_name: Marinobacter adhaerens


ncbi_country: USA: UC Davis Medical Center; Davis; Ca

ncbi_isolation_source: blood

ncbi_submitter: UC Davis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Actinomycetaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Morganella morganii

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: University of Connecticut


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Michigan


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Paenibacillus sp. KS-LC4

ncbi_submitter: Kunsan National University


ncbi_isolation_source: community garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_assembly_name: Bifbif

ncbi_isolation_source: Breast-fed Infant feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Parma


ncbi_country: Kenya: KDH MDR TB Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0007

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Gloeotrichia echinulata DVL01

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Polyangiales bacterium


ncbi_organism_name: uncultured Megasphaera sp.


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_submitter: Aalborg University


ncbi_organism_name: Microbacterium sp. ZW T5_45

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11120

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Parabacteroides sp. D25


ncbi_organism_name: Tenuifilaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia

ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cyanobacteria bacterium J06623_7

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06623_7


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Oceanospirillales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: USA: Washington

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UW


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Sphingobium sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Pseudacidobacterium ailaaui

ncbi_submitter: University of British Columbia


ncbi_country: China: Shandong

ncbi_isolation_source: Brain tissue of dead ducks

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020052023

ncbi_submitter: Broad Institute


ncbi_organism_name: Erysipelotrichaceae bacterium 5_2_54FAA


ncbi_country: Sweden: Oresund

ncbi_isolation_source: Top-layer sediments

ncbi_organism_name: Sphingorhabdus sp. SMR4y

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: IMG-taxon 2657245729 annotated assembly

ncbi_organism_name: Streptomyces sp. Cmuel-A718b

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom: Norwich

ncbi_strain_identifiers: P091C P

ncbi_submitter: Imperial College London


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus WAMC6102


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pretoria


ncbi_organism_name: Tateyamaria omphalii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: water; hot spring; Mammoth Sinkhole II

ncbi_organism_name: Fischerella thermalis PCC 7521

ncbi_submitter: Heinrich-Heine-University Duesseldorf


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France: Corsica; near Sagone

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. AP-Jannik-300A-C4

ncbi_submitter: University of Innsbruck


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: China: Anhui


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_submitter: University of Trento


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: Thailand


ncbi_organism_name: Mesorhizobium sp. NBIMC_P2-C2

ncbi_submitter: FDA


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: India: Chennai

ncbi_isolation_source: Aqueous aspirate

ncbi_organism_name: Brucella anthropi

ncbi_submitter: MEDICAL RESEARCH FOUNDATION, SANKARA NETHRALAYA


ncbi_country: Singapore

ncbi_isolation_source: mixed liquor from activated sludge; highly enriched sample containing a single organism selected through FISH-FACS and genomic binning

ncbi_organism_name: Sphingobacteriales bacterium TSM_CSS

ncbi_submitter: SCELSE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: lamb

ncbi_organism_name: Clostridium algidicarnis

ncbi_submitter: University of Zurich


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_organism_name: Listeria monocytogenes


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Neisseria sicca


ncbi_country: USA: High Ridge; Jefferson County; Missouri

ncbi_isolation_source: Mouth

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Washington University in St. Louis


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0138

ncbi_submitter: Broad Institute


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Veblenbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;x__unclassified Candidatus Veblenbacteria;s__Candidatus Veblenbacteria bacterium


ncbi_country: Sweden: Lidkoeping

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: dtu national food institute


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: University of Oviedo


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: Rumen uncultured genome RUG12327

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_country: Germany

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWF2_43_8


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_country: Ukraine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: ANSES Ploufragan


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_isolation_source: intestine

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus kitasatonis;x__Lactobacillus kitasatonis DSM 16761 = JCM 1039


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Sinomonas puerhi

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 414

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 2899

ncbi_submitter: University of Calgary


ncbi_country: USA: NY

ncbi_isolation_source: intestine (Canis lupus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Plantactinospora sp. ZYX-F-223

ncbi_submitter: Chinese Academy of Tropical Agriculture Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- A14_bin-1987

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: IBPM RAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Castellaniella defragrans 65Phen

ncbi_submitter: MAX-PLANCK-INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Corynebacterium bouchesdurhonense

ncbi_submitter: URMITE


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_assembly_name: Rumen uncultured genome RUG13045

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mouse gut metagenome


ncbi_submitter: University of California San Diego


ncbi_country: United Kingdom: Kingston upon Thames

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Kingston University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: burned soil

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Bulgaria: Silistra

ncbi_isolation_source: yellow cheese produced without pasteurization

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Fastidiosipila sanguinis


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Indian Ocean

ncbi_isolation_source: marine

ncbi_organism_name: Qipengyuania profundimaris

ncbi_submitter: SECOND INSTITUTE OF OCEANOGRAPHY, MNR


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Leucobacter chromiireducens

ncbi_submitter: Central South University


ncbi_organism_name: Candidatus Anaerobutyricum stercoris


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Paeniroseomonas aquatica

ncbi_strain_identifiers: CECT 7131

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: West Haven; CT

ncbi_isolation_source: gut

ncbi_organism_name: Frischella perrara

ncbi_submitter: University of Lausanne


ncbi_isolation_source: Tracheal aspirate from a hospitalized patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Avimonas intestinalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas intestinalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas intestinalis


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Szeged


ncbi_submitter: VCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Kinetoplastidibacterium;s__Candidatus Kinetoplastidibacterium crithidiae;x__Candidatus Kinetoplastidibacterium crithidiae TCC036E


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Delft University of Technology


ncbi_country: Canada: Guelph

ncbi_isolation_source: seeds

ncbi_organism_name: Cronobacter sp. EKM102R

ncbi_submitter: University of Guelph


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden

ncbi_organism_name: Brucella pseudintermedia

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chulabhorn Research Institute


ncbi_country: China: Chengdu

ncbi_isolation_source: Aquatic products

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_country: France: Reims

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia sp. WS6

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: USA: FL

ncbi_isolation_source: fecal calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Bangladesh

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Pigmentiphaga sp.

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: Denmark

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Xanthomonas sp. NCPPB 2922

ncbi_strain_identifiers: NCPPB 2922

ncbi_submitter: University of Exeter


ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Oak Ridge

ncbi_isolation_source: groundwater

ncbi_organism_name: Janthinobacterium sp. GW460W

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis EnGen0060

ncbi_submitter: Broad Institute


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Tyzzerella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: IN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Alaska

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mycoplasma sp. 'Moose RK'

ncbi_strain_identifiers: Moose RK

ncbi_submitter: USDA-ARS


ncbi_country: Afghanistan

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Photorhabdus sp. S9-53

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: USA: Arizona

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T64 sea water enriched with oil for 64 days

ncbi_organism_name: Halobacteriovorax marinus

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: India: Kadwad village; Bidar taluk and district; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Gwangwha Island; Incheon

ncbi_isolation_source: a rhizosphere mudflat of a halophyte

ncbi_organism_name: Aurantiacibacter suaedae

ncbi_submitter: Jeju National Univeristy


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-00287

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-00287


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Vibrio ishigakensis

ncbi_submitter: The University of Tokyo


ncbi_country: Antarctica: King George Island; Admiralty Bay

ncbi_isolation_source: petroleum-contaminated soil collected near the petroleum pumping and storage warehouse at the Henryk Arctowski Polish Antarctic Station

ncbi_organism_name: Sporosarcina sp. ANT_H38

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Ghana: Tulaku Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome hRUG906

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: soil

ncbi_organism_name: Herbaspirillum sp. meg3

ncbi_submitter: Jeju National University


ncbi_organism_name: Bacillus cereus BAG1X2-3

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG1X2-3


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea:Kyungki

ncbi_isolation_source: stool

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: BRD


ncbi_country: USA: Boston

ncbi_isolation_source: Wound abscess

ncbi_organism_name: Escherichia coli MGH 57

ncbi_strain_identifiers: MGH 57


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Lactobacillus amylovorus


ncbi_isolation_source: intermediate water

ncbi_organism_name: Moritella sp. F3

ncbi_submitter: Tokyo university of marine science and technology


ncbi_assembly_name: IMG-taxon 2617270887 annotated assembly

ncbi_organism_name: Billgrantia desiderata

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3001

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Papua New Guinea

ncbi_isolation_source: Skin Ulcer

ncbi_organism_name: Fusobacterium ulcerans

ncbi_submitter: SC


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma urealyticum;x__Ureaplasma urealyticum serovar 9;x__Ureaplasma urealyticum serovar 9 str. ATCC 33175


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Florida


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Velocimicrobium sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_country: Russia: Moscow region

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SRCAMB


ncbi_country: Viet Nam:Hanoi

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG10521

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Ear

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: Yale Center for Genome Analysis


ncbi_organism_name: Gardnerella sp. DNF01204

ncbi_submitter: Fred Hutch


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: TN FL 158

ncbi_submitter: Tamilnadu Agricultural University


ncbi_organism_name: Camelimonas abortus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Megamonas funiformis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Gemella haemolysans


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: France: Les Antiques; Alpilles; Provence

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: King Mongkut's Institue of Technology Ladkrabang


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: MD

ncbi_isolation_source: musca domestica alimentary canal

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: College of Life Science


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9645

ncbi_organism_name: uncultured Mycobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia