ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Hong Kong: Clear Water Bay

ncbi_genome_representation: full

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA200

ncbi_submitter: Broad Institute


ncbi_assembly_level: Contig

ncbi_isolation_source: Vagina

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: SC


ncbi_country: USA: Madison; WI

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Chromosome

ncbi_country: USA: OH

ncbi_isolation_source: Digital lesion

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_strain_identifiers: Scherm

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Pannonibacter anstelovis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: t

ncbi_organism_name: Clostridia bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Utah


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: freshwater MAG --- AM_bin-0098

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG14326

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bradyrhizobium sp. USDA 4532

ncbi_strain_identifiers: USDA 4532


ncbi_country: Mexico: Escuinapa; Sinaloa

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Photobacterium lucens

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CAIM 1937

ncbi_submitter: CIAD, A.C.

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Lebanon

ncbi_isolation_source: urine from Syrian refugee

ncbi_submitter: LAU


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: USDA-ARS


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Croceicoccus sp. Ery15

ncbi_submitter: The Second institute of Oceanography


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA:Texas; Nueces County; Port Aransas; Amos Rehabilitation Keep

ncbi_isolation_source: soil

ncbi_organism_name: Brucella intermedia

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Leptospirillum ferriphilum


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_submitter: The First Affiliated Hospital of Nanchang University,Nanchang University


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_submitter: University of Guelph


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Francisella sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Yersinia rochesterensis

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Rhodospirillales bacterium


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: Georgia

ncbi_isolation_source: Patient ulcer

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: National Center for Disease Control and Public Health (NCDC) of Georgia


ncbi_assembly_name: Acinetobacter baumannii Genome sequencing

ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii LY8

ncbi_submitter: The Singapore Centre on Environmental Life Sciences Engineering


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Athalia cordata


ncbi_assembly_name: IMG-taxon 2654588140 annotated assembly

ncbi_organism_name: Porphyromonadaceae bacterium KH3R12

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil: Brasilia

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Embrapa Genetic Resources and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Shewanella sp. JNE4-2

ncbi_submitter: Yangzhou University


ncbi_assembly_name: R-75386 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_country: USA: MD

ncbi_isolation_source: Oxytetracycline Medicated Fish Feed

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Wenzhou Medical University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: smoked salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_strain_identifiers: Durban

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: South Korea: Seoul

ncbi_isolation_source: catheter blood

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: EFM 30

ncbi_submitter: Yonsei Medical Center


ncbi_assembly_name: Salmonella enterica CVM N42336-SQ v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter okinawensis

ncbi_submitter: university of Ghent


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA3273

ncbi_submitter: University of Queensland


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Escherichia coli CVM N34322PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N34322PS


ncbi_isolation_source: faeces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Vibrio plantisponsor

ncbi_submitter: National Institute for Interdisciplinary Science and Technology (CSIR)


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-020-07_S3_C1

ncbi_submitter: IGS


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 8132

ncbi_submitter: INRA


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: burned soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chlamydia trachomatis RC-J(s)/122

ncbi_submitter: Oregon State University


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: ETH Zurich


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil

ncbi_isolation_source: Meconium

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-1942

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22948;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Japan: Fukushima;Ohnuma

ncbi_organism_name: Longispora fulva

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_strain_identifiers: CSPERAK 3770-5

ncbi_submitter: Universiti Putra Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brancaster


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: uncultured Atribacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__environmental samples;s__uncultured Atribacterota bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Rhabdochlamydia sp.

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp.


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Lishizhenia sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Sphingobium sp. GCM10012300

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Korea

ncbi_submitter: Gangwon province Institute of Health & Environment


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Dialister succinatiphilus


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Cellvibrionales bacterium UBA1969

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Idiomarinaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium psychrotolerans

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: rhizosphere soil culture M58

ncbi_organism_name: Kocuria sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Shigella sp. FJ201001

ncbi_submitter: Fujian Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Marinilabiliaceae bacterium UBA5279


ncbi_country: Algeria: Bejaia

ncbi_isolation_source: tomato

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_country: Sudan

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABOJE

ncbi_submitter: NHGRI


ncbi_isolate: metabat2_XCR1_HET_7832_bwa.63 MAG

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_7832_bwa.63 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Russia: Perm region; Chusovoj

ncbi_isolation_source: child living in a Mn; vanadium; nickel contaminated area polluted by a metallurgical factory

ncbi_submitter: FBUN FNC MPT URZN


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W39826

ncbi_submitter: Broad Institute


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Clemson University


ncbi_country: Poland: Lesser Poland; Lapczyca

ncbi_isolation_source: Brine

ncbi_organism_name: Halomonas sp. 25-S5

ncbi_submitter: University of Lodz


ncbi_assembly_name: Rumen uncultured genome RUG10289

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Kenya

ncbi_isolation_source: Kenya

ncbi_organism_name: Streptomyces formicae

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ponticoccus sp. SC2-60

ncbi_submitter: Shantou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA: Florida

ncbi_isolation_source: Feces

ncbi_submitter: University of Florida


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: The University of Queensland


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroides caecigallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: EMG


ncbi_country: Germany: Wernigerode

ncbi_isolation_source: tracheal swab from cat-captured mouse

ncbi_organism_name: Acinetobacter sp. NCu2D-2

ncbi_submitter: Robert Koch-Institut


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of Queensland


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Tetragenococcus halophilus NBRC 12172

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Germany: Hamburg

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: Belarus: Minsk Region

ncbi_isolation_source: lignocellulosic wastes

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: blood culture of a hospitalized patient

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolate: CON4 bin9

ncbi_organism_name: Treponema sp.

ncbi_strain_identifiers: CON4 bin9

ncbi_submitter: China Agricultural University


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: USA: Tennessee

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Marivivens sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus faecis

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Finland

ncbi_isolation_source: Pork meat

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: University of Helsinki


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: Germany

ncbi_isolation_source: Hospitalized patient

ncbi_organism_name: Enterococcus faecium EnGen0051

ncbi_submitter: Broad Institute


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bifidobacterium sp.


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_isolation_source: seawater

ncbi_organism_name: Neptunitalea chrysea

ncbi_submitter: Egitim Fakultesi, Mugla Sitki Kocman University


ncbi_country: Portugal

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Corynebacterium marambiense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Falsiroseomonas sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Marinovum sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Zhanjiang City

ncbi_isolation_source: freshwater lake

ncbi_organism_name: beta proteobacterium AAP99

ncbi_submitter: Institute of Microbiology, ASCR


ncbi_organism_name: Agathobaculum sp.


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 19

ncbi_strain_identifiers: UCI 19

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 19


ncbi_country: Brazil

ncbi_isolation_source: liver from bovine aborted fetus

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_organism_name: Bellilinea sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_country: Spain: Huelva; Cueva de la Mora

ncbi_isolation_source: Deep anoxic layer (35m depth) Cueva de la Mora

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: The Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus avium

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil: Santa Catarina

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: FIOCRUZ


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S019_01147

ncbi_submitter: Zhejiang University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Spain: Asturias

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: foregut

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_submitter: South China Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Switzerland

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: France: Nimes

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: A-DAP-SS

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Desulfuromonas sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_country: USA: N. Brookville; Ohio

ncbi_isolation_source: sink drain

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 food additive

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Sciensano


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: Toledo; OH

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: China: Tianjin

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nankai University


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFCSPHIGHO2_12_FULL_54_9


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Roi-Et

ncbi_isolation_source: meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Public Health


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_organism_name: Nocardia sp. NBC_01503

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhoushan

ncbi_isolation_source: sewage tank of aquatic processing plant

ncbi_organism_name: Nocardioides malaquae

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Psychroserpens sp. AS72

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: brain

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Research Center of Fish Disease


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_country: USA:Idaho; Franklin county; ID-36 through Emigration Canyon

ncbi_organism_name: Candidatus Gillettellia adelgis

ncbi_submitter: University of Georgia


ncbi_country: Australia: Loxton; South Australia

ncbi_isolation_source: Grape cutting

ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Luminiphilus sp. nBUS_07

ncbi_submitter: University of Washington


ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Archangium sp.


ncbi_organism_name: Bacillus cereus group sp. BceL149

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL149


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Acidimicrobium sp.


ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWC2_40_22

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWC2_40_22


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_isolation_source: sludge

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Shenzhen University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Pig farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: France

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: groin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus sp. S5P8-50

ncbi_submitter: University of Bern


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK202

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Columbus; Ohio

ncbi_isolation_source: X-ray mutagenesis of type strain

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: OSU


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Chitinimonas sp.

ncbi_submitter: Xiamen University


ncbi_assembly_name: Rumen uncultured genome RUG11926

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_country: France: Corsica

ncbi_isolation_source: calcareous sponge Clathrina clathrus

ncbi_organism_name: Poriferisphaera corsica

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Toronto

ncbi_submitter: University of Toronto


ncbi_organism_name: Streptococcus sanguinis


ncbi_organism_name: Giesbergeria sp.


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-0989

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter parvus NIPH 1103

ncbi_strain_identifiers: NIPH 1103

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_isolation_source: farm sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Laval


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 1449

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas sp. FP1740

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_assembly_name: Escherichia coli CVM N36396PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N36396PS

ncbi_submitter: FDA


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Australia

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Murdoch University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_submitter: University of Toronto


ncbi_country: Romania: Pitesti

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus sp. FH8

ncbi_submitter: Faculty of Biology, University of Bucharest

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. FH8


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-11227

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: water

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_country: Australia: Brisbane

ncbi_isolation_source: cystic fibrosis lung

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Bradyrhizobium sp. HKCCYLS1049

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_isolation_source: chicken intestinal contents

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides congonensis


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Chitinimonas lacunae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus AMMC6011

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: pork


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 01T23B2

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oslo


ncbi_country: China: Qinghai

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: Japan:Saitama; Sayama

ncbi_isolation_source: Soil

ncbi_organism_name: Actinoplanes campanulatus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_country: Egypt

ncbi_isolation_source: Ground beef

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea

ncbi_isolation_source: gingeng soil

ncbi_organism_name: Flavobacterium ginsengisoli

ncbi_submitter: Inha Univ.


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of South Africa


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parolsenella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: China: Xinjiang

ncbi_isolation_source: terrestrial

ncbi_organism_name: Nostoc sp. XA013

ncbi_submitter: institute of hydrobiology


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacillales bacterium UBA4856

ncbi_submitter: University of Queensland


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Sulfuricella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Citrobacter meridianamericanus

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidetes bacterium UBA2795

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA2795


ncbi_isolate: metabat2_coassembly_bwa.12 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.12 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Bifidobacterium scardovii


ncbi_organism_name: Salipiger sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: EMG


ncbi_country: Germany: Munich

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Crocosphaera watsonii WH 0401

ncbi_submitter: UCSC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: barley

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_isolation_source: liver

ncbi_organism_name: Morganella morganii

ncbi_submitter: Sichuan University


ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium cheongpyeongense

ncbi_submitter: INHA University


ncbi_country: USA: NJ

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Galiano Island

ncbi_isolation_source: Ixodes angustus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: urine

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2023EL-00494


ncbi_assembly_name: IMG-taxon 2675903029 annotated assembly

ncbi_organism_name: Paraburkholderia lycopersici

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Central Plains Experimental Range; Colorado

ncbi_isolation_source: short-grass prairie soil

ncbi_organism_name: Symplocastrum torsivum CPER-KK1

ncbi_submitter: University of California, Riverside


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Abyssobacteria;s__Candidatus Abyssobacteria bacterium SURF_17


ncbi_organism_name: Micromonosporaceae bacterium


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Armatimonadaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_strain_identifiers: Saari 8

ncbi_submitter: University of Helsinki


ncbi_organism_name: Klebsiella oxytoca 10-5244

ncbi_submitter: Broad Institute


ncbi_country: USA: New Jersey

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas kribbensis

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: AOP35_05H_surf _bin _25

ncbi_organism_name: Micrococcaceae bacterium

ncbi_strain_identifiers: AOP35_05H_surf _bin _25

ncbi_submitter: Genoscope


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: YangZhou university


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Xanthomonas axonopodis pv. vasculorum

ncbi_strain_identifiers: LMG 903

ncbi_submitter: UNIVERSITY OF HAWAII AT MANOA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.3;x__Xanthomonas axonopodis pv. vasculorum


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Solimonas sp.


ncbi_organism_name: Halopseudomonas aestusnigri

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_submitter: Fudan University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_submitter: Osaka University


ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: Salmonella sp. NW1243

ncbi_submitter: Sichuan University


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: Estonia: Tartu

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13127

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-1201

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Bangladesh: Kushtia

ncbi_isolation_source: Clinical wastes

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Islamic University


ncbi_country: India

ncbi_isolation_source: Garden Soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Alistipes finegoldii


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: South Korea:Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Metabacillus niabensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: CAU


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: wound

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brevibacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Streptomyces sp. NPDC056982

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: IMG-taxon 2700988686 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWH9

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0822

ncbi_submitter: BILS


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Gaiellales bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0621

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: uncultured Cellvibrionaceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Brachybacterium conglomeratum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_country: Hungary

ncbi_isolation_source: caecum domestic rabbit

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: Isolate 13

ncbi_submitter: Kalmar county hospital


ncbi_country: Tanzania

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Ningbo

ncbi_isolation_source: pus

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EBI


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Hungatella sp.

ncbi_submitter: University of Copenhagen


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: ARTP mutation

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jiangnan University


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Denmark

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Neisseria elongata

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: ANSES


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Serratia symbiotica

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Marinobacter oulmenensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Shewanella hafniensis

ncbi_strain_identifiers: ATCC BAA-1207

ncbi_submitter: Toho University


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: beijing


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 32

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bielefeld, Germany


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: AOP9_I1_surf _bin _19

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP9_I1_surf _bin _19

ncbi_submitter: Genoscope


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Lethbridge


ncbi_country: USA

ncbi_organism_name: Escherichia coli EC4448

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Kuwait

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Kuwait University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: University Hospital of Abidjan-Cocody

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: throat

ncbi_submitter: unverisity medical center groningen


ncbi_country: China: Guangdong

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute, Germany


ncbi_isolation_source: faecal

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-0237

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lentzea sp. NPDC006480

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Clostridium sp. AF37-5

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: India

ncbi_isolation_source: ETA

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Anaerosomatales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: sputum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: cold seep

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Pedobacter alpinus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces rishiriensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Neptuniibacter sp. QD37_11

ncbi_submitter: Shantou University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: New Zealand: Macauley Cone

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Bathyaustriella thionipta


ncbi_country: Slovenia

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: China: Fujian

ncbi_isolation_source: cerebro-spinal fluid

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chongqing Medical and Pharmaceutical College


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: EMG


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Nantong; Jiangsu province

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: China: Yangzhou

ncbi_isolation_source: sampling staff sole swab


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BMK

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Bifidobacterium actinocoloniiforme DSM 22766

ncbi_submitter: Zhejiang Gongshang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Aliiroseovarius sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Acinetobacter faecalis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-0950

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Amycolatopsis roodepoortensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Michigan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_submitter: University of Texas at Dallas


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 96-2

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Rhodococcus sp. BS-15

ncbi_submitter: Kitami Institite of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BS-15


ncbi_country: China: southern Taiwan

ncbi_isolation_source: coastal marine

ncbi_organism_name: Hoeflea prorocentri

ncbi_submitter: Hohai University


ncbi_organism_name: Streptococcus sp. UBA632

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Department of Molecular Bacteriology, Research Institute for Microbial Diseases, Osaka University


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Erwinia sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_isolate: metabat2_coassembly_bwa.655 MAG

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.655 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_assembly_name: Acholeplasma oculi strain 19L

ncbi_organism_name: Acholeplasma oculi

ncbi_submitter: MPIMG


ncbi_strain_identifiers: Isolate 30

ncbi_submitter: University of Siena


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: meat

ncbi_organism_name: Pseudomonas extremaustralis

ncbi_submitter: CEBITEC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Bifidobacterium pseudocatenulatum