ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_assembly_level: Scaffold

ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_assembly_level: Contig

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lysobacter sp. 22409

ncbi_submitter: Yantai University


gtdb_representative: t

ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: China: Malan

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_assembly_name: Rumen uncultured genome RUG13261

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: meat

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. TM10-2

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: Brazil: Parana

ncbi_isolation_source: soil

ncbi_organism_name: Leclercia adecarboxylata

ncbi_strain_identifiers: Palotina

ncbi_submitter: UFPR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Institute for Basic Sceince


ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV160

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_organism_name: Desulfobacteraceae bacterium 4572_123

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_country: Bangladesh

ncbi_isolation_source: Other body fluids

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Bacteriovoracales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human tissue

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas agarici

ncbi_submitter: Wageningen University & Research

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Prevot Dewping

ncbi_submitter: Northern Arizona University


gtdb_type_species_of_genus: t

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: sludge

ncbi_organism_name: Enteractinococcus helveticum

ncbi_refseq_category: reference genome

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Solobacterium moorei F0204

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Estonia

ncbi_isolation_source: internal organs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mixta calida


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_country: China: Heilongjiang

ncbi_submitter: South China Agricultural University


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-88


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University College Dublin


ncbi_country: Australia: Surat Basin; Queensland

ncbi_isolation_source: Filtered formation waters collected from the Coxon Creek 10 (CX-10) coalbed methane well

ncbi_organism_name: Deltaproteobacteria bacterium UBA7527

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA7527


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: Buttermilk powder

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Groningen


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Pseudomonas glycinae


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW531-R1

ncbi_submitter: Arkin Lab


ncbi_country: USA: Sacramento; CA

ncbi_submitter: UC Davis


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Desantisiibacteriota;s__Candidatus Desantisbacteria bacterium CG_4_8_14_3_um_filter_40_12


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Hiroshima University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Bartonellaceae;g__Bartonella;s__Bartonella doshiae;x__Bartonella doshiae NCTC 12862 = ATCC 700133


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Candidatus Campylobacter infans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China: Xining

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Streptomyces sp. NPDC005435

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Bacteroides togonis

ncbi_submitter: URMITE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: SC


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Nigeria

ncbi_isolation_source: symptomatic lesions of tomato plants

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arachnia propionica NBRC 14587

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: India: Lonar Lake

ncbi_isolation_source: saline and alkaline soil

ncbi_organism_name: Streptomyces alkaliterrae

ncbi_submitter: Nicolaus Copernicus University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Microbacterium phosphatis

ncbi_submitter: Institute of Biology Co., Ltd, Henan Academy of Sciences


ncbi_organism_name: Lacunisphaera sp.


ncbi_country: USA: MD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: USA: VA

ncbi_isolation_source: goose feces (Branta canadensis)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa: Northern Cape Province

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Synergistaceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1064

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1730


ncbi_isolation_source: human gut


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium UBA3073


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0103R

ncbi_submitter: Broad Institute


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Trento

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Parma


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_assembly_name: freshwater MAG --- AM2_bin-0110

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: France

ncbi_organism_name: Dickeya solani

ncbi_submitter: Institute for integrative biology of the cell


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Macrococcoides caseolyticum


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_organism_name: Pigmentiphaga litoralis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Shaanxi Qingling mountain

ncbi_isolation_source: soil

ncbi_organism_name: Erwinia sp. QL-Z3

ncbi_submitter: College of Life Science


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lambayeque

ncbi_organism_name: Streptomyces sp. CS149

ncbi_submitter: Universidad de Oviedo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Schleiferia thermophila

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Qujing Normal University


ncbi_country: Iran: Caspian sea near Balbosar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus faecalis T11

ncbi_submitter: Broad Institute


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0034

ncbi_submitter: University of Liege


ncbi_country: India

ncbi_isolation_source: dry soil

ncbi_organism_name: Litoribacter ruber

ncbi_submitter: Institute of Applied Microbiology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Chile: Santiago

ncbi_strain_identifiers: ACE 59

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: hot water systems

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_country: USA: Texas

ncbi_isolation_source: aphids on Pistacia tree

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium endosymbiont of Geopemphigus sp.


ncbi_organism_name: Streptococcus canis

ncbi_submitter: FU berlin


ncbi_organism_name: Epilithonimonas hominis


ncbi_country: Norway: the Svalbard archipelago

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pontibacter arcticus

ncbi_submitter: Shandong University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: France: Camargue

ncbi_isolation_source: water

ncbi_organism_name: Pectobacteriaceae bacterium C80

ncbi_submitter: CNRS UMR5240


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Geodermatophilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P152P


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Hangzhou

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: EUPOLsin

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Muribaculum gordoncarteri

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Marinobacteraceae bacterium S3BR75-40.1

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium 13_1_40CM_2_65_8


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Chloroflexi bacterium CFX7

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium CFX7


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_submitter: University of Liverpool


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: USA: Florida

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Candidatus Onthousia excrementipullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Onthousia;s__Candidatus Onthousia excrementipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthousia;s__Candidatus Onthousia excrementipullorum


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: EMG


ncbi_country: USA: NY

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR2019

ncbi_submitter: Broad Institute


ncbi_organism_name: Chlorobi bacterium CHB7

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobi bacterium CHB7


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-16083

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: mantle tissue

ncbi_organism_name: Aquipseudomonas alcaligenes OT 69

ncbi_strain_identifiers: OT 69

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_assembly_name: freshwater MAG --- MJ3_bin-000

ncbi_organism_name: uncultured Sterolibacterium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Turkey

ncbi_isolation_source: traditional yogurt 2

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: TSGB 4231

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_isolation_source: burned soil

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Hengyang

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: USA: New Mexico; Sevilleta Desert

ncbi_isolation_source: desert soil

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Sardinia; Tramariglio

ncbi_isolation_source: soft bottom

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: University of Sassari


ncbi_country: Paraguay

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Helicobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG12358

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Rothia sp. P4278

ncbi_submitter: Masaryk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. P4278


ncbi_organism_name: Streptomyces similanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: hydraulically fractured well fluid at Timepoint_82

ncbi_organism_name: Halomonadaceae bacterium T82-2

ncbi_submitter: The Ohio State University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Rikenella sp.


ncbi_isolation_source: pet food (BARF)

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: drag swab: produce field

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Micromonospora okii

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_country: Singapore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA2952


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Taklamakan desert in Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Desertihabitans brevis

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: NJ/NY oil refinery site

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Stutzerimonas balearica

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient11 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Wandonia haliotis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: uncultured Balneola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;g__Balneola;x__environmental samples;s__uncultured Balneola sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: sludge from a mesophilic anaerobic wastewater digester enriched on phosphite and carbon dioxide

ncbi_organism_name: Aminobacterium sp. EBM-42

ncbi_submitter: UC Berkeley


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: Canada: Charlottetown

ncbi_isolation_source: eye swab

ncbi_organism_name: Eikenella halliae

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hong Kong

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Texas

ncbi_isolation_source: Clean room

ncbi_organism_name: Ureibacillus endophyticus

ncbi_submitter: NASA Johnson Space Center


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: MA; Boston

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Broad Institute


ncbi_country: Canada

ncbi_isolation_source: retail chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Bacteroides cellulosilyticus CL02T12C19

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Georgia

ncbi_isolation_source: human feces

ncbi_organism_name: Barnesiellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China: Beijing

ncbi_isolation_source: drainage

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Marinobacter gelidimuriae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium indicum


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Castellaniella denitrificans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Prochlorococcus sp. MIT 0601

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Phocaeicola coprophilus


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Kiloniella sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Frigoribacterium sp. 2-23

ncbi_submitter: Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Monash University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Geitlerinemataceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas forensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: Hospital Universitario Marques de Valdecilla (Santander)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRA (INRA Jouy en Josas)


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India

ncbi_isolation_source: oil

ncbi_organism_name: Achromobacter insolitus

ncbi_strain_identifiers: AK-COS

ncbi_submitter: National Environmental Engineering Research Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Yonsei University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDH8C109P

ncbi_submitter: South China Agricultural University


ncbi_country: Sweden: near Abisko

ncbi_isolation_source: freshwater lake sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of California, Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1473

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 14

ncbi_strain_identifiers: CHS 14

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 14


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alabama; Simpson

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of California Davis


ncbi_country: Brazil

ncbi_isolation_source: Raw Sausage

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Eubacterium xylanophilum ATCC 35991

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Vibrio sp. 780

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: ProBone


ncbi_assembly_name: IMG-taxon 2623620519 annotated assembly

ncbi_organism_name: Butyrivibrio proteoclasticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1573

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Beduini sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: EMG


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus agalactiae MRI Z1-035

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Italy: Udine

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Helicobacter pylori SA164A

ncbi_submitter: MHH


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-61A1

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: freshwater MAG --- YR_bin-3044

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2585428065 annotated assembly

ncbi_organism_name: Tepidibacter thalassicus DSM 15285

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: California Department of Public Health


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrosomonas sp. Is24

ncbi_submitter: Miami University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: Tsinghua University


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Fayetteville AR

ncbi_isolation_source: Grower Feed

ncbi_organism_name: Enterococcus sp. PF-3

ncbi_submitter: Pittsburg State University


ncbi_country: South Africa

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: North-West University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: bioreactor

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_country: Kenya: Lwak

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_strain_identifiers: Fiocruz LV4234

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV4234


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallacutalibacter pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Gallacutalibacter;s__Candidatus Gallacutalibacter pullicola


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Tete de Moine

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_isolation_source: blown cheese

ncbi_organism_name: Loigolactobacillus bifermentans DSM 20003

ncbi_submitter: Shanghai Majorbio


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Psychrobacter sp. 1Y6


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_submitter: Toho University


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_submitter: MRSN BI Team


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Wunengus sp. YC65

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wunengus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wunengus;x__unclassified Candidatus Wunengus;s__Candidatus Wunengus sp. YC65


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Gongshang University


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: University hospital Lubeck


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-1003

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Caulobacter sp. ErkDOM-YI

ncbi_strain_identifiers: ErkDOM-YI

ncbi_submitter: Stockholm University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium M7

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M7


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: meat product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: MPIPZ


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: China: Henan

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. CFH S0078

ncbi_strain_identifiers: CFH S0078

ncbi_submitter: Xinxiang Medical University


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Indonesia

ncbi_isolation_source: sea snail

ncbi_strain_identifiers: EPEC 919f

ncbi_submitter: Shanghai Customs


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Kenya

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Blautia sp. BCRC 81119

ncbi_submitter: FIRDI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;x__unclassified Blautia;s__Blautia sp. BCRC 81119


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Sphingopyxis sp.


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micrococcus porci

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: blood

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: LCDC 99A006

ncbi_submitter: national microbiology laboratory


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Allomuricauda sp. MMSF_3362

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Desulfocicer vacuolatum DSM 3385

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Germany: Grieheim

ncbi_isolation_source: Insects

ncbi_organism_name: Streptomyces sp. AM 2-1-1

ncbi_submitter: Albert Ludwigs Universitaet Freiburg


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Ecuador

ncbi_isolation_source: pulmonary

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad San Francisco de Quito


ncbi_organism_name: Streptococcus cristatus


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M65003

ncbi_submitter: Broad Institute


ncbi_assembly_name: Assembly of Aneurinibacillus migulanus Nagano

ncbi_organism_name: Aneurinibacillus migulanus


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea: 86; Jungnim 3-ro; Gwangdo-myeon; Tongyeong-si; Gyeongsangnam-do

ncbi_isolation_source: seawater

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Seowon University


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: USA: New York City

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: dog bite

ncbi_organism_name: Lysobacteraceae bacterium NML07-0707

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_isolation_source: Chicken; thigh

ncbi_organism_name: Listeria innocua

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Treponema pedis

ncbi_submitter: Washington State University


ncbi_country: USA: Kentucky

ncbi_isolation_source: Sink drain at pizza restaurant

ncbi_organism_name: Ochrobactrum sp. MR31

ncbi_submitter: University of Louisville


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: Japan

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Illinois


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Saudi Arabia

ncbi_submitter: FDA/CFSAN


ncbi_country: France

ncbi_isolation_source: pork

ncbi_strain_identifiers: EPEC 1095a

ncbi_submitter: Shanghai Customs


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-325

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidia bacterium

ncbi_strain_identifiers: new MAG-325

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Xanthomonas euvesicatoria pv. allii

ncbi_submitter: Universidade de Brasilia


ncbi_organism_name: Borreliella afzelii K78

ncbi_submitter: BOVAC


ncbi_isolation_source: Mulberry soil

ncbi_organism_name: Flavobacterium selenitireducens

ncbi_submitter: Shandong University of Technology


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_organism_name: Mycolicibacterium porcinum

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Actinophytocola glycyrrhizae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Brazil

ncbi_isolation_source: umbilicus

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: ECBEZ

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Monash University


ncbi_organism_name: Paenarthrobacter sp. NPDC018779

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroidia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Prosthecobacter sp.


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: USA: North Carolina

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: North Carolina State University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes SHL009

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: DC

ncbi_isolation_source: Right eye swab

ncbi_organism_name: Agrobacterium sp. FDAARGOS_525

ncbi_submitter: US Food and Drug Administration


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Shanghai City

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: China: Xinjiang

ncbi_organism_name: Bacillus sp. S66

ncbi_submitter: Nanjing University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S66


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 151

ncbi_submitter: Oregon State University


ncbi_assembly_name: IMG-taxon 2710724122 annotated assembly

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa24

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: Sewer

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine water anammox upflow column reactor biofilm on non-woven sheet

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: KAUST


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Santander

ncbi_isolation_source: Pharyngeal swab

ncbi_submitter: ITACYL


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: South Korea: Changwon

ncbi_isolation_source: tuberculosis patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: University of Pittsburgh


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: bone infection of foot

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_assembly_name: IMG-taxon 2599185353 annotated assembly

ncbi_organism_name: Staphylococcus hominis


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas sp. VA159-2

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Zhejiang

ncbi_isolation_source: Domestic environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_submitter: Toho University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Slackia exigua

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Sichuan

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: French Guiana

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Miami


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Balcanica

ncbi_submitter: Massey University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Spain

ncbi_isolation_source: surface sediment

ncbi_organism_name: Ferrimonas balearica DSM 9799

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Candidatus Aphodomonas merdavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Aphodomonas;s__Candidatus Aphodomonas merdavium


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Pseudomonas mandelii

ncbi_submitter: Universite Laval


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Institute of Subtropical Agriculture, Chinese Academy of Sciences.


ncbi_country: United Kingdom

ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-21

ncbi_submitter: Rothamsted Research


ncbi_country: USA: Woods Hole; MA

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Paracoccus yeei

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC058542

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH3059

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Chitinophaga sp. W2I13

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: VAR A4 1.1

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Enterocloster lavalensis

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Peking University


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Chromatiaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_assembly_name: freshwater MAG --- Day2-1_bin-038

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Yunnan

ncbi_organism_name: Bartonella sp. W8151

ncbi_submitter: China Agricultural University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_assembly_name: Comamonas testosteroni P19

ncbi_country: South Korea

ncbi_isolation_source: biphenyl as a sole carbon source from the waste water

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: JEJU NATIONAL UNIVERSITY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Robinsoniella sp. KNHs210

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: Rumen uncultured genome RUG11434

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Czech Republic: Ostrava

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium bohemicum

ncbi_submitter: University of Trento


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: Colombia: Bolivar

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: USA: Granby; CT

ncbi_isolation_source: termite hindgut

ncbi_organism_name: Dysgonomonas sp. GY617

ncbi_submitter: University of Connecticut


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: McGill University


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01321

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01321


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil

ncbi_isolation_source: feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alcanivorax sp. UBA2512

ncbi_submitter: University of Queensland


ncbi_organism_name: Terracidiphilus sp.


ncbi_organism_name: Streptococcus pneumoniae DAR3264

ncbi_submitter: University of Mississippi medical center


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: Rumen uncultured genome RUG13323

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan: Chiayi

ncbi_isolation_source: coffee beans

ncbi_organism_name: Enterococcus alishanensis

ncbi_submitter: Ming Chuan University


ncbi_country: China: Shandong; Weifang

ncbi_isolation_source: feces

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: ShandongCDC


ncbi_country: USA

ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University of Michigan


ncbi_organism_name: Limnospira sp. PMC 1249.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: Rumen uncultured genome RUG13839

ncbi_organism_name: uncultured Bacteroidales bacterium