ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston; Massachusetts

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Micromonospora sp. NPDC005979

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: EMG


ncbi_organism_name: Sphingomonas sp. MMO-176

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- KR2_bin-1077

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: China: Guangzhou

ncbi_isolation_source: bioaerosols from garbage station

ncbi_organism_name: Psychrobacter ciconiae

ncbi_submitter: Southern Medical University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Fluviibacter phosphoraccumulans

ncbi_submitter: CRC RESIST


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lacticaseibacillus rhamnosus GG

ncbi_strain_identifiers: GG

ncbi_submitter: Chr. Hansen A/S


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: India

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2428PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


gtdb_type_species_of_genus: t

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum;sb__Lactiplantibacillus plantarum subsp. plantarum;x__Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Qucai Geothermal Area

ncbi_isolation_source: geothermal spring

ncbi_organism_name: Thermus caldifontis

ncbi_refseq_category: reference genome

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_organism_name: Streptomyces sp. TSRI0384-2

ncbi_submitter: The scripps research institute


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Escherichia coli MC23

ncbi_submitter: The Genome Institute


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_organism_name: Streptococcus australis

ncbi_submitter: Icahn School of Medicine


ncbi_country: United Kingdom:Charing Cross

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: LCR

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: URMITE


ncbi_country: Italy

ncbi_isolation_source: starter bakery

ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: CIRM-BIA 2226

ncbi_submitter: Brigham Young University


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Shandong; Jinan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_assembly_name: Rumen uncultured genome RUG13732

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Candidatus Profundicultor aquiphilus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yantai

ncbi_submitter: Yuhuangding hospital


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_organism_name: Kribbella soli

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli Jurua 18/11

ncbi_strain_identifiers: Jurua 18;11

ncbi_submitter: IGS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Brisbane

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Limosilactobacillus sp.


ncbi_assembly_level: Chromosome

ncbi_country: Greece

ncbi_isolation_source: potato

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Virginia Tech


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomyces sp. SH-PL62

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. AF04-24

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: DELrpoZ

ncbi_organism_name: Synechocystis sp. PCC 6803 substr. GT-T

ncbi_strain_identifiers: DELrpoZ;PCC 6803

ncbi_submitter: University of Turku

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Merismopediaceae;g__Synechocystis;x__unclassified Synechocystis;s__Synechocystis sp. PCC 6803;x__Synechocystis sp. PCC 6803 substr. GT-T


ncbi_isolation_source: Georgia; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_submitter: SC


ncbi_country: Brazil: Rio de Janeiro; Parnaso

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. CBMA 247

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Tibet and Tibetan Autonomous Region

ncbi_organism_name: Herbiconiux oxytropis

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_country: France

ncbi_isolation_source: Elbow abcess

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Parachlamydiales bacterium


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: China: Taizhou

ncbi_isolation_source: pharyngeal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Czech Republic: South Bohemian Region

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: Beer

ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: South China University of Technology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Microbacterium gorillae

ncbi_submitter: College of Resources and Environmental science


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. NW93

ncbi_submitter: Sichuan University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin45

ncbi_organism_name: Deinococcota bacterium

ncbi_strain_identifiers: MSU bin45

ncbi_submitter: Monash University


ncbi_assembly_name: Rumen uncultured genome RUG14746

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Candidatus Veblenbacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;x__unclassified Candidatus Veblenbacteria;s__Candidatus Veblenbacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10438

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Australia: Sydney

ncbi_isolation_source: Outer Ear Infection

ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_strain_identifiers: ATCC 9027

ncbi_submitter: CSIRO


ncbi_country: Costa Rica

ncbi_organism_name: Candidatus Pantoea edessiphila

ncbi_strain_identifiers: SoEE

ncbi_submitter: Ohio State University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_isolation_source: Honey

ncbi_organism_name: Parasaccharibacter sp. TMW2.1890

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_organism_name: Arcicella sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: India: Madhya Pradesh; Sehore

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Candidatus Contendobacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;x__unclassified Candidatus Contendobacter;s__Candidatus Contendobacter sp.


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Guangxi

ncbi_isolation_source: mangrove plant

ncbi_organism_name: Salinicola avicenniae

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Human feces

ncbi_organism_name: Eubacterium sp. LMAG:67

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. LMAG:67


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Microcoleus vaginatus ZQ-A4

ncbi_submitter: Institute of Hydrobiology


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Pseudomonas cedrina

ncbi_submitter: Zoological Institute, Kiel University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: turkey

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Alkalimonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: EMG


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Peribacillus psychrosaccharolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: oropharynx of Rhesus monkey

ncbi_organism_name: Neisseria macacae ATCC 33926

ncbi_submitter: Korea University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: Institute of Microbiology


ncbi_country: China: Fujian

ncbi_isolation_source: excreted feces

ncbi_organism_name: Agaribacterium haliotis

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_country: China: Sichuan

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chongqing Medical University


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human milk

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: paw swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Pretroia

ncbi_isolation_source: CSF

ncbi_submitter: University of Pretoria


ncbi_assembly_name: Salmonella enterica CVM N38240-SQ v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: FDA


ncbi_country: USA: TX

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: uncultured Marixanthomonas sp.

ncbi_submitter: EMG


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Rickettsiaceae bacterium


ncbi_organism_name: Aeromonas sp. R5-2

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Xiamen University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Sydney

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bdellovibrionaceae bacterium UBA1609

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter sp. WU_MDCI_Abxc22

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B3-2-1

ncbi_submitter: Curtin University


ncbi_isolation_source: pet food (BARF)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter cloacae complex sp. 419I3

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 419I3


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: EMG


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Microbacterium aurugineum

ncbi_submitter: Fudan University


ncbi_submitter: Xiamen University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 145

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paenibacillus medicaginis

ncbi_submitter: Hungarian University of Agriculture and Life Sciences University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. TH208-1LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. TH208-1LC


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: University of Michigan


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Streptococcus suis 89-5259

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: Trach aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Georgenia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1265

ncbi_submitter: Broad Institute


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: NanJing University


ncbi_country: Canada: Metcalfe Bay; British Columbia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Methylorubrum zatmanii

ncbi_strain_identifiers: SLI 499

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SJUD6056


ncbi_isolation_source: CF sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: universita degli studi di verona


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_country: USA: Durham; NC

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea: Yellow sea

ncbi_isolation_source: Tidal flat

ncbi_organism_name: Pelagibacterium sediminicola

ncbi_submitter: Inha University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Marseille

ncbi_organism_name: Clostridium neonatale

ncbi_submitter: IHU - Mediterannee Infection


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Methylobacter marinus A45

ncbi_submitter: JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Brachyspira pulli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Comamonas piscis

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Canada: Alberta

ncbi_isolation_source: coal bed cutting

ncbi_organism_name: Flavobacterium sp. UBA4098

ncbi_submitter: University of Queensland


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: The University of Queensland


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_country: China: Sansha

ncbi_isolation_source: sea water

ncbi_organism_name: Paenibacillus oceani

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_country: China

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Hungatella hathewayi CAG:224

ncbi_submitter: DTU


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Rhodococcoides fascians 05-339-1

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas sp. 10S4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG14063

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India

ncbi_organism_name: Pseudomonas amygdali pv. sesami

ncbi_strain_identifiers: ICMP 4995

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. sesami


ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax arabinosiphilus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Alcaligenes sp.


ncbi_assembly_name: freshwater MAG --- Loc080925-4m_bin-1037

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Streptomyces sp. NBC_01186

ncbi_submitter: Technical University of Denmark


ncbi_country: South Africa: Durban

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Japan

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: ASCENSION


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Streptomyces sp. BH104

ncbi_submitter: University of California Davis


ncbi_organism_name: Thalassospira sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__candidate division WOR-1 bacterium RIFCSPHIGHO2_02_FULL_45_12


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Ruegeria sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Weeksellaceae bacterium


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Australia

ncbi_isolation_source: surgical site

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Kurthia gibsonii


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: Switzerland

ncbi_isolation_source: Deep Tissue

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Priestia megaterium

ncbi_submitter: North Carolina State University


ncbi_country: Australia: Sydney; Botany Sands Aquifer

ncbi_isolation_source: dichloromethane-fermenting enrichment culture inoculated with organochlorine-contaminated groundwater

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-560

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: New York

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: cBio Corp


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 53

ncbi_submitter: Lebanese American University


ncbi_country: Ukraine

ncbi_isolation_source: groin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-43

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Oslo


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. L-S3606

ncbi_submitter: South China Agricultural University


ncbi_country: Belgium

ncbi_isolation_source: blood

ncbi_organism_name: Epilithonimonas hominis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: India

ncbi_isolation_source: cow milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: CSIR-CFTRI Mysore


ncbi_organism_name: Streptomyces sp. NPDC012600

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_country: France

ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: Savastovar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Bradyrhizobium sp.


ncbi_organism_name: Hydrocarboniphaga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Brevundimonas sp.


ncbi_country: Germany: Eastern Thuringia; Gessenbach near Ronneburg

ncbi_isolation_source: fresh creek bank soil; topsoil

ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: Friedrich-Schiller-University Jena


ncbi_isolation_source: chicken farm

ncbi_submitter: Wuhan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Staphylococcus aureus W27852

ncbi_submitter: Broad Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1491


ncbi_organism_name: Casimicrobiaceae bacterium


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Malaysia: Penang

ncbi_isolation_source: water from pickled fruit

ncbi_organism_name: Paenibacillus sp. J5C2022

ncbi_submitter: Universiti Malaysia Pahang


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Final Effluent

ncbi_organism_name: Bacillus aerophilus

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Atlantic Ocean: Gulf of Guinea

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Caecum


ncbi_country: USA

ncbi_isolation_source: lactic starter

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM-BIA 1590

ncbi_submitter: Brigham Young University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Actinotignum urinale

ncbi_submitter: Capital Region


ncbi_country: Mexico: Cuatro Cienegas; Coahuila

ncbi_organism_name: Streptomyces sp. PR69

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: INRAE


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_isolation_source: subject with localized aggressive periodontitis

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype b str. SCC1398


ncbi_organism_name: Bacillus cereus group sp. BceL009

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL009


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_strain_identifiers: ISU 874

ncbi_submitter: USDA-ARS


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Gull Lake

ncbi_organism_name: Microcystis aeruginosa G13-12

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces sp. NPDC059900

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Milan


ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Variovorax sp. RB3P1

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_isolation_source: clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA133

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: China: Anhui

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University of Alberta


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Pelagibacter sp. TMED128

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. TMED128


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0649


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: Spain

ncbi_isolation_source: lung

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: UCM


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG26

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Daejeonella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Clostridioides sp. ES-S-0006-03

ncbi_submitter: Northern Arizona University


ncbi_country: Finland

ncbi_isolation_source: Norway spruce forest humus

ncbi_organism_name: Paenibacillus borealis

ncbi_submitter: Cornell University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Behind the ears

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Cupriavidus alkaliphilus

ncbi_submitter: Northwest Missouri State University


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: part of plant

ncbi_organism_name: Streptomyces scabiei

ncbi_strain_identifiers: LBUM 1488

ncbi_submitter: Universite de Moncton


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus sp. DIV1297f

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Calditerricola satsumensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: Crenalkalicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Corynebacterium coyleae

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Ontario

ncbi_isolation_source: ANIMAL-Domestic Cattle

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120356


ncbi_country: USA: MD

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Proteus sp. G4444

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4444


ncbi_submitter: Centre for Microbiome Research


ncbi_strain_identifiers: Sil MILK 11

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Yonsei University College of Medicine


ncbi_country: Spain: Mallorca; El Arenal

ncbi_isolation_source: flooring

ncbi_organism_name: Gimesia chilikensis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: Pus swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Acetobacter sp. CAG:977

ncbi_submitter: DTU


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_country: USA: Massachusetts;Boston;The Forsyth Institute

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp. TM7-057

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. TM7-057


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: South Korea

ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: KNU


ncbi_isolation_source: feces from 34 year old woman in South America before 1979

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni LMG 9081


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactococcus taiwanensis


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Shewanella indica

ncbi_submitter: South China Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG473

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Porto Alegre

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: human stool

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Finegoldia magna


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia pseudotuberculosis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Western Australia


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_AP_1

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_isolate: AOP23_C1_coeur _bin _1

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: AOP23_C1_coeur _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University Hospital Lozenetz


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Collinsella bouchesdurhonensis


ncbi_organism_name: Shouchella clausii

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Adlercreutzia sp.


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- E14_bin-0963

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Tianjin

ncbi_isolation_source: water

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Insititute of microbilogy,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum sample from hospital patient

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Jinhua Central Hospital


ncbi_country: United Kingdom: England

ncbi_isolate: Invasive disease

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Invasive disease;BSAC_bs1388

ncbi_submitter: University of Sheffield


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Pseudacidovorax sp. 1753

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Colon

ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: Maridesulfovibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5401

ncbi_submitter: University of Queensland


ncbi_country: USA:International Space Station; Node 3

ncbi_isolation_source: air

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India: Puducherry

ncbi_isolation_source: PUS

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_country: Taiwan: Yanshui district

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Cheng Kung University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Alberta

ncbi_organism_name: Rhodonellum sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Macrococcoides caseolyticum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_country: USA: Florida

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Exeter University


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Togo et al. 2019)


ncbi_organism_name: Trichlorobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM N51295 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: FDA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Infant 2 DOL 14 oral

ncbi_organism_name: Staphylococcus epidermidis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_isolation_source: dental biofilm

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Mitsuokella sp. UBA4225

ncbi_submitter: University of Queensland


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0105

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_organism_name: Pseudomonas savastanoi pv. nerii

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. nerii


ncbi_country: Canada: New Brunswick

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Mycobacteroides sp. HXVII

ncbi_strain_identifiers: HXVII

ncbi_submitter: US EPA


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter pametensis

ncbi_submitter: University of Antwerp, Belgium


ncbi_assembly_name: IMG-taxon 2529292557 annotated assembly

ncbi_organism_name: Corynebacterium glucuronolyticum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea

ncbi_isolation_source: Human

ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: loliI FS10

ncbi_submitter: Kangwon National University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Mexico: Torreon; Coahuila

ncbi_isolation_source: Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: rumen

ncbi_organism_name: Paenibacillus dendritiformis

ncbi_strain_identifiers: CRN 18

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: marine

ncbi_organism_name: Phycisphaerales bacterium


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Chromobacterium sp. LK1

ncbi_submitter: University of Malaya


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Oregon State University


ncbi_country: South Korea: Taein-dong; Gwangyang-si; Jeollanam-do

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: Seoul National University


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: Qingdao University

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_organism_name: Micromonospora sp. NPDC048887

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


ncbi_country: China: China University of Geosciences Beijing

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: Boston; MA

ncbi_isolation_source: BRONCHOALVEOLAR LAVA

ncbi_organism_name: Serratia marcescens BIDMC 50

ncbi_strain_identifiers: BIDMC 50

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Parafrankia soli

ncbi_submitter: East Tennessee State University


ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Pseudomonas sp. NPDC089752

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Nitrosospira sp.

ncbi_submitter: EMG


ncbi_submitter: Shinshu university hospital


ncbi_organism_name: Beutenbergiaceae bacterium

ncbi_submitter: University of Fribourg


ncbi_organism_name: Segatella copri


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: Institute for Molecular Bioscience


ncbi_organism_name: Rahnella rivi

ncbi_submitter: University of Alberta


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Quebec

ncbi_isolation_source: patient with CDAD

ncbi_organism_name: Clostridioides difficile QCD-32g58

ncbi_submitter: Washington University (WashU)


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Actinosynnema sp. NPDC050801


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Cystobacterineae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Erysipelotrichales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Demequina lutea

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: India

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Urine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Streptomyces sp. BE230

ncbi_submitter: Washington University in St. Louis


ncbi_country: Russia

ncbi_isolation_source: 4th dilution order of 9-month-old decomposing birch leaves

ncbi_organism_name: Afipia sp.

ncbi_submitter: ARRIAM


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_isolation_source: blood


ncbi_country: USA: NC

ncbi_isolation_source: environment

ncbi_submitter: FDA


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Oxford


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Yonsei University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Sphingobacterium sp. 2149

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Lucknow

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae


ncbi_organism_name: Ilyobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Enterobacter sp. 146F3

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Jamaica

ncbi_isolation_source: Phaseolus vulgaris

ncbi_organism_name: Xanthomonas sp. NCPPB 1128

ncbi_strain_identifiers: NCPPB 1128

ncbi_submitter: University of Exeter


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_country: France

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: Arctic Ocean: Southern Knipovich Ridge

ncbi_isolation_source: marine sediment core GS10_PC15; 223 cmbsf

ncbi_organism_name: Candidatus Anoxychlamydiales bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Candidatus Anoxychlamydiales;x__unclassified Candidatus Anoxychlamydiales;s__Candidatus Anoxychlamydiales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Niallia circulans

ncbi_submitter: BEI Resources


ncbi_organism_name: Candidatus Rubneribacter avistercoris

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 146-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. B21-102

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S113-49063

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Deep seawater from Mariana Trench

ncbi_organism_name: Paroceanicella profunda

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Longimicrobium terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_isolation_source: purulent fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Liverpool


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Ekhidna sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: India: Mangrove forest; Namkhana

ncbi_isolation_source: soil

ncbi_organism_name: Rhodovulum sp. PH10

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Acinetobacter tandoii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: India

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Actinoplanes sp. NPDC023714

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ostreiculturibacter nitratireducens

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP