ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


gtdb_representative: f

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Durham; NC

ncbi_isolation_source: left thigh tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile P69

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: China: Beijing

ncbi_isolation_source: salted duck egg

ncbi_submitter: Center for Disease Prevention and Control of PLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_level: Scaffold

ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides faecis CAG:32

ncbi_submitter: DTU


ncbi_country: Thailand: Nakhon pathom

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Cutibacterium sp. SC8-2W

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides merdigallinarum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Paracoccus sp.


ncbi_country: Russia: Tver

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Tepidanaerobacter syntrophicus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0330

ncbi_submitter: The University of Queensland


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: India: East Rathong Glacier

ncbi_isolation_source: glacier forefield soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: Aeromonas oralensis

ncbi_refseq_category: reference genome

ncbi_submitter: al-Farabi Kazakh National University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerorhabdus sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;x__unclassified Atribacterota;s__Candidatus Atribacteria bacterium UBA6794


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Kramfors

ncbi_isolation_source: Baltic Sea sediments close to the wastewater stream of a sulfite pulp production plant

ncbi_organism_name: Pseudomonas sp. 9.1(2019)

ncbi_submitter: Lignin valorization group at Lund University


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Stenotrophomonas hibiscicola

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Antarctica

ncbi_isolation_source: beach sediment

ncbi_organism_name: Polaribacter sp. 20A6

ncbi_submitter: Shandong University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: TN

ncbi_isolation_source: Sow

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59910F

ncbi_submitter: FDA


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_assembly_level: Chromosome

ncbi_organism_name: Nostoc linckia NIES-25

ncbi_submitter: Toyohashi University of Technology


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia: Irkutsk Region; Irkutsk

ncbi_isolation_source: swamp-lake complex

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Irkutsk Antiplague Research Institute of Siberia and Far East


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_assembly_name: IMG-taxon 2596583606 annotated assembly

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Pontiellaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: New Zealand

ncbi_organism_name: Rhizobium rhizogenes

ncbi_strain_identifiers: ICMP 4617

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA

ncbi_isolation_source: Egg

ncbi_submitter: Agricultural Research Service, United States Department of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Widemarsh


ncbi_organism_name: Aequorivita antarctica

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Ontario

ncbi_isolation_source: symptomatic shoots/leaves

ncbi_organism_name: Pseudomonas cerasi

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Toho University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Chicago


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: clinical isolate

ncbi_organism_name: Serratia marcescens SMB2099

ncbi_submitter: JLU


ncbi_country: China: Tianjin

ncbi_isolation_source: salt water

ncbi_organism_name: Salinivibrio kushneri

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: USA: FL

ncbi_isolation_source: Calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Zunongwangia profunda

ncbi_submitter: EMG


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli BIGS0002

ncbi_submitter: Swansea University


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: Activated sludge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Ireland

ncbi_isolation_source: Green peas

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Teagasc Food Research


ncbi_country: China: Dalian

ncbi_isolation_source: intestine

ncbi_strain_identifiers: ZC-S1 2nd

ncbi_submitter: Dalian University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newlands


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Corynebacterium simulans

ncbi_submitter: Eberhard Karls Universitaet Tuebingen


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: France: La Reunion Island

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: VHProbi M12

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 577

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_strain_identifiers: CIM:MAG 577

ncbi_submitter: Mayo Clinic


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef patties

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces boninensis

ncbi_submitter: Chulabhorn Graduate Institute


ncbi_country: China: Liaoning

ncbi_isolation_source: saline estuarine water

ncbi_organism_name: Halomonas salinarum

ncbi_submitter: CAU(China Agricultural University)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2734482144 annotated assembly

ncbi_organism_name: Nitrosomonas ureae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Gifu University - Life Science Research Center - Division of Anaerobe Resear ch


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0289

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Sporomusaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Ruminobacter sp.

ncbi_submitter: DOE JGI


ncbi_country: Zimbabwe

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae CP1038(11)

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Prevotella sp.


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-494

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin4

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: HIE bin4

ncbi_submitter: Monash University


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: UIUC


ncbi_organism_name: Enterobacter cloacae complex sp. CDL007

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. CDL007


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC053079

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudoalteromonas tetraodonis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Montana State University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: mill for raw meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas oryzae

ncbi_submitter: Xiamen University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Calgary


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Eudoraea sp.

ncbi_submitter: Monash University


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food producing environment surface

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Canada

ncbi_organism_name: Helicobacter pylori R037c

ncbi_submitter: IGS


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Nanyang Technological University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human skin

ncbi_organism_name: Falseniella ignava

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hattori Laboratory, Department of Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, The University of Tokyo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Neisseria perflava

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Myopa tessellatipennis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: VHProbi O10

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Kenya: Talek

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. ZJOU C1

ncbi_strain_identifiers: ZJOU C1

ncbi_submitter: Zhejiang Ocean University


ncbi_country: Ethiopia: Oromia; East Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Thomasclavelia sp.

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_isolation_source: feed for poultry

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Leifsonia sp.

ncbi_submitter: EPFL


ncbi_country: Seychelles: Mahe Island

ncbi_isolation_source: gut

ncbi_organism_name: Commensalibacter melissae

ncbi_submitter: University of Liverpool


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Francisella tularensis


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: final product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Rothia aeria


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas avellanae

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Segatella copri

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: L'Oreal


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Loyola University Chicago


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: urine culture

ncbi_submitter: Istituto Superiore di Sanita


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: poultry meal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000178


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG211

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Paraguay

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: strain KUD2

ncbi_submitter: Nigeria


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] nexile


ncbi_country: Australia

ncbi_isolation_source: lung

ncbi_submitter: University of New South Wales


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shandong University


ncbi_country: Switzerland: Bern

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox granular sludge freshwater column reactor

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Hydrogenophaga sp.


ncbi_organism_name: uncultured Tardiphaga sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC056231

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Roseburia inulinivorans


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterococcus sp. DIV0655

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Globicatella sulfidifaciens

ncbi_submitter: University of Minnesota


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kaust


ncbi_organism_name: Corynebacterium pollutisoli


ncbi_isolate: AOP7_C1_surf _bin _8

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP7_C1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. 5

ncbi_submitter: Cornell University


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Staphylococcus hominis subsp. hominis

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alicyclobacillus cycloheptanicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: FL

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Fuscovulum sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sterile site

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0964

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pelistega sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bdellovibrionaceae bacterium UBA3536

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: USA: Lake Superior

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Chicago


ncbi_organism_name: [Ruminococcus] torques


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Vienna


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Somalia

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: DMB SH20142

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sea water

ncbi_organism_name: Planktomarina sp.

ncbi_submitter: University of Oldenburg


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: oysters; cultured off Spanish Mediterranean coast; Vinaroz

ncbi_organism_name: Roseibium album

ncbi_strain_identifiers: CECT 7551

ncbi_submitter: UVEG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. BT190

ncbi_submitter: Seoul Women's University


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: Thailand: Surat Thani

ncbi_isolation_source: fruit

ncbi_organism_name: Acetobacter suratthaniensis

ncbi_strain_identifiers: TBRC 1719

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: carageenan 40-100 m particle (artificial) late colonization

ncbi_organism_name: Zobellia uliginosa

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_isolation_source: Feces

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Zhejiang

ncbi_isolation_source: retail chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Rhizobiaceae group bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__environmental samples;s__uncultured Rhizobiaceae group bacterium


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: University of Maryland Baltimore


ncbi_country: China

ncbi_organism_name: Corynebacterium qintianiae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_country: USA: HI

ncbi_isolation_source: Seawater

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: rice paddy

ncbi_organism_name: Phytopseudomonas straminea

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Brazil

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 12888

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: CT;Gay City State Park Hebron

ncbi_isolation_source: Amphibolite rock found found in surrounding area by Mill site

ncbi_organism_name: Allobranchiibius sp. CTAmp26

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_submitter: US Meat Animal Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Campylobacter coli 59-2

ncbi_submitter: Cornell University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagaceae bacterium UBA5593

ncbi_submitter: University of Queensland


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Human

ncbi_organism_name: Mycobacterium riyadhense

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_submitter: EMG


ncbi_organism_name: Pseudescherichia sp.


ncbi_organism_name: Bacillus albus

ncbi_submitter: University of Zurich


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;s__Candidatus Terrybacteria bacterium RIFCSPLOWO2_01_FULL_44_24


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Netherlands

ncbi_isolation_source: mouse kidney

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Campylobacter concisus


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: Kansas State University


ncbi_organism_name: Avibacterium endocarditidis

ncbi_strain_identifiers: SCPM-O-B-13139 (Simon)

ncbi_submitter: SRCAMB


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Smithella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_strain_identifiers: # 3 line S

ncbi_submitter: Saratov State University of Genetics, Biotechnology and Engineering named after N.I. Vavilov


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Kitasatospora griseola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: pig gut metagenome


ncbi_country: Denmark: Hilleroed

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Region Zealand


ncbi_organism_name: Saccharopolyspora pogona

ncbi_submitter: Hunan Normal University


gtdb_type_species_of_genus: t

ncbi_organism_name: Chondromyces crocatus

ncbi_strain_identifiers: Cm c5

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Shandong

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Weifang People's Hospital


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Magnetospirillum sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis


ncbi_organism_name: Geodermatophilus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Mycetohabitans endofungorum

ncbi_submitter: Cornell University


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Guangzhou

ncbi_isolation_source: fecal sample

ncbi_submitter: SouthChina Agriculture University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Minnesota

ncbi_isolation_source: Penile lesion

ncbi_organism_name: Aggregatibacter segnis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosomonas eutropha

ncbi_strain_identifiers: Nm 57

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Rothia sp.


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Synechococcus sp. MIT S1220

ncbi_strain_identifiers: MIT S1220

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Providencia sp. CIM-Carb-044

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Nevskia sp.

ncbi_submitter: University of Glasgow


ncbi_organism_name: Trebonia sp.


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Maryland Eastern Shore


ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Yersinia pestis MGJZ9

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Health Canada


ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: oral cavity

ncbi_organism_name: Haemophilus aegyptius ATCC 11116

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_isolation_source: sludge of an anaerobic digestion reactor

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus catus

ncbi_submitter: University College Cork


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Serratia sp. PL1

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. PL1


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7734A

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: stream rock

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: Maryland

ncbi_isolate: MRSN 3405

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii MRSN 3405

ncbi_strain_identifiers: MRSN 3405

ncbi_submitter: Walter Reed Army Institute of Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii MRSN 3405


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG721

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Anaerovibrio slackiae

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces sp. NPDC048376

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Psychroflexus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Arsenicicoccus bolidensis

ncbi_strain_identifiers: ACRQZ

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW297

ncbi_submitter: Sichuan University


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Multivoradales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;x__unclassified Candidatus Multivoradales;s__Candidatus Multivoradales bacterium


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Shandong University


ncbi_isolate: Phaeobacter sp. SH40

ncbi_organism_name: Phaeobacter sp. SH40

ncbi_strain_identifiers: Phaeobacter sp. SH40

ncbi_submitter: Helmholtz Institute for Functional Marine Biodiversity


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: uncultured Ferruginibacter sp.


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: California

ncbi_isolation_source: plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: Spain: Asturias

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Polaromonas sp. YR568

ncbi_submitter: Biology Centre CAS


ncbi_country: Germany: Tanna

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Actibacterium sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Myroides sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: stomach contents

ncbi_organism_name: Lactobacillus sp. LL6

ncbi_submitter: University of California Irvine


ncbi_country: China: Hefei

ncbi_organism_name: Streptomyces sp. T12

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: France

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: IA

ncbi_isolation_source: feces (Meleagris sp.)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bulleidia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Peptostreptococcales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospira bacterium HGW-Nitrospira-1

ncbi_submitter: UC Berkeley


ncbi_submitter: The University of Tokyo


ncbi_organism_name: Segatella copri

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: University of Parma


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: EMG


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: France: Reims

ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia sp. SEWSISQ10-4 2

ncbi_strain_identifiers: SEWSISQ10-4 2

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Guangxi University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CHU de Bicetre


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: King's College London


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. ML290

ncbi_submitter: Universidad de Sevilla


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sp. AK08-02

ncbi_submitter: Oregon State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Streptomyces triculaminicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Streptomyces sp. NPDC047023


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Bulgaria

ncbi_isolation_source: Black Sea water

ncbi_organism_name: Ancylomarina euxinus

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina sp. UBA3162

ncbi_submitter: University of Queensland


ncbi_organism_name: Paenibacillus sp. PastF-2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Psychrobacter sp. AH5

ncbi_submitter: King Abdulaziz City for Science and Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Plant

ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Institute of Biology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: South Korea: Gyeong buk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Dorea sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of Southern California


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: Sweden: Gothenborg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: uncultured Chthoniobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Succinivibrio sp.


ncbi_organism_name: Monoglobus pectinilyticus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_country: Italy: Lecco

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: DSMZ Isolate

ncbi_organism_name: Streptomyces californicus

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Poland: Otwock

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces sp. Akac8

ncbi_submitter: Hubbard Center for Genome Studies


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD18090

ncbi_submitter: Broad Institute


ncbi_isolation_source: caprine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: UCC strain

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Hospital La Paz


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter kobei

ncbi_strain_identifiers: 54w winter

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Nonomuraea sp. N2-4H

ncbi_submitter: Chungnam National University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Rhizobium sp. IMFF44

ncbi_submitter: Marondera University of Agricultural Sciences and Technology (MUAST)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: Aquaculture system

ncbi_organism_name: Citrobacter sp. On28M

ncbi_submitter: UFTM


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC024062

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Brachymonas denitrificans

ncbi_submitter: Linnaeus University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: adult hen caecal content

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1380

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFOXYC1_FULL_41_16


ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920


ncbi_country: Netherlands

ncbi_isolation_source: grass shoots

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: stream sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA

ncbi_isolation_source: in silico pooling of 166 mouse fecal samples

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_40_14


ncbi_country: USA: Michigan

ncbi_organism_name: Citrobacter freundii


ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Brazil

ncbi_isolation_source: abdominal fluid

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: NIVIP


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaerobutyricum hallii


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Maine

ncbi_organism_name: Wolbachia endosymbiont of Drosophila melanogaster

ncbi_submitter: University of Montana


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia schinkii

ncbi_submitter: University of Chicago


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Nepal: Himalayas; soil from near a hot spring

ncbi_isolation_source: alpine soil [ENVO:00005741]

ncbi_organism_name: Streptomyces sp. MBT62

ncbi_submitter: Institute of Biology, Leiden University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_country: USA: Beltsville; MD

ncbi_isolation_source: chicken

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: North West University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0644

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Granulicella sp.


ncbi_country: China: Beijing

ncbi_organism_name: Blautia segnis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Marine fish farm

ncbi_organism_name: Yersinia ruckeri


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Tang lab


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Guangxi; Dachang

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: South Korea

ncbi_isolation_source: Armpit

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Korea University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Avipropionibacterium sp.

ncbi_submitter: University of Fribourg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;x__Propionibacteriaceae incertae sedis;g__Candidatus Avipropionibacterium;x__unclassified Candidatus Avipropionibacterium;s__Candidatus Avipropionibacterium sp.


ncbi_organism_name: Bifidobacterium boum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Agitococcus sp.

ncbi_submitter: The University of Hong Kong


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: SPRUCE 70

ncbi_organism_name: Opitutales bacterium

ncbi_strain_identifiers: SPRUCE 70

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: CA

ncbi_isolation_source: Raw Goat Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Clostridium sp. SN20

ncbi_submitter: URMITE


ncbi_country: USA

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: China:Fujian Provience

ncbi_isolation_source: intertidal zone

ncbi_organism_name: Shewanella sedimentimangrovi

ncbi_submitter: Agricultural Bio-resources Research Institute


ncbi_country: Atlantic Ocean: Gulf of Cadiz

ncbi_isolation_source: cold seep sediment sample 8 MPa II

ncbi_organism_name: Desulfosarcina sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Paenibacillus sp. IITD108

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Instituto Nacional de Salud


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-1707

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: China: Yangjiang

ncbi_isolation_source: Sewage

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: fecal material

ncbi_organism_name: Oxalobacter aliiformigenes

ncbi_submitter: University of Western Ontario


ncbi_isolation_source: host stool sample

ncbi_organism_name: Peptoniphilus timonensis JC401

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198


ncbi_isolation_source: Abdominal abscess

ncbi_organism_name: Streptococcus intermedius B196

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_isolation_source: soil

ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: Hunan Academy of Agricultural Science


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Africa

ncbi_isolation_source: Environment

ncbi_submitter: Zoonosis Science Center


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China