ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Sweden

ncbi_genome_representation: full

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


gtdb_representative: t

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: rock scraping

ncbi_organism_name: Synechocystis sp. PCC 7509

ncbi_submitter: JGI


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Toronto


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Imperial College London


ncbi_organism_name: Rhodococcoides fascians

ncbi_submitter: National Institute of Agronomy, Tunis, Carthage University


ncbi_country: Norway: Molde

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: D

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: National Centre for Infectious Diseases


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Streptococcus sp. CCH8-G7

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Washington


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_assembly_level: Chromosome

ncbi_organism_name: Limnospira platensis NIES-39

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Rhizobium sp. Q54


ncbi_organism_name: Oceanihabitans sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Myroides sp. C4067

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


gtdb_type_species_of_genus: t

ncbi_organism_name: Glycocaulis abyssi

ncbi_refseq_category: reference genome

ncbi_submitter: University of Scranton

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Alberta


ncbi_submitter: University of Galway


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05852

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolate: AOP5_B1_surf _bin _21

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP5_B1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_isolate: AOP42_C2_surf _bin _17

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP42_C2_surf _bin _17


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: Microbacterium sp. 22296

ncbi_submitter: Yantai University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteriovoracia bacterium

ncbi_submitter: Inha University


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Massilimicrobiota timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: Pus culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Mozambique

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Shinella sp. UYSO24

ncbi_submitter: Institute of Biological Research Clemente Estable


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Terribacillus sp. 7520-G

ncbi_submitter: Bielefeld University


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Vercelli

ncbi_isolation_source: paddy soil amended with rice straw

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0335R

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Germany

ncbi_isolation_source: infection

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: SA G8

ncbi_submitter: University of Pecs


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Amycolatopsis vancoresmycina

ncbi_submitter: University of Illinois


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Acidaminococcus massiliensis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: University of Turku


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Akkermansiaceae bacterium UBA1955

ncbi_submitter: University of Queensland


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Sneathia sp.


ncbi_country: Guatemala

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Milking apparatus

ncbi_organism_name: Siminovitchia fortis

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Guelph


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: France: Morbihan

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Anses


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Mycoplasma feriruminatoris

ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Pelagibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Yunnan; PuEr City; SiMao District

ncbi_isolation_source: Rodent

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Thailand

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Francisella tularensis

ncbi_submitter: SRCAMB


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Turicimonas muris


ncbi_country: Switzerland

ncbi_isolation_source: river sediment

ncbi_organism_name: Kaistia defluvii

ncbi_submitter: University of Neuchatel


ncbi_country: USA: Boston

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: EPFL


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: lung biopsy of a patient with chronic destructive pneumonia

ncbi_organism_name: Brucella sp. BO2

ncbi_submitter: Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Salmonella enterica

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Germany

ncbi_organism_name: Salana multivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Klebsiella oxytoca


ncbi_country: USA: Yellowstone National Park; Wyoming

ncbi_isolate: OS-Red

ncbi_isolation_source: hot spring phototrophic microbial mat; red layer

ncbi_strain_identifiers: Yellowstone;OS-Red

ncbi_submitter: The Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Schleiferiaceae;g__Schleiferia;s__Schleiferia thermophila;x__Schleiferia thermophila str. Yellowstone


ncbi_country: USA: NC

ncbi_isolation_source: Cattle

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 22513


ncbi_isolation_source: sediment

ncbi_organism_name: Sulfuricaulis limicola

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Xanthomonas sp. LF06-19

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,CAAS


ncbi_country: France: Nantes

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mesorhizobium sp. M1143

ncbi_submitter: Washington State University


ncbi_country: China

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Metabacillus fastidiosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Belgium

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Saccharicrinis sp. FJH65

ncbi_submitter: Shandong University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_country: China: Guangxi

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Vreelandella piezotolerans

ncbi_submitter: Ocean University of China


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Salmonella sp. NW613

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: IMG-taxon 2623621021 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_submitter: Oklahoma State University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus cereus BAG3O-1

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG3O-1


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University College Cork


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: BGI-Shenzhen


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_country: China: Guangdong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_country: USA: New Mexico

ncbi_isolation_source: Fecal Material

ncbi_organism_name: Streptomyces sp. A0958

ncbi_submitter: Hubbard Center for Genome Studies


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Solibacter sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__unclassified Candidatus Solibacter;s__Candidatus Solibacter sp.


ncbi_country: USA

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: The Research Institute at Nationwide Children's Hospital


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Africa: Pretoria

ncbi_submitter: University of Pretoria


ncbi_country: Finland: Lake Saimaa

ncbi_isolation_source: lice collected 2009 through 2017 from Pusa hispida saimensis

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: wastewater

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Holosporales;f__Candidatus Nucleicultricaceae;g__Candidatus Nucleicultrix;s__Candidatus Nucleicultrix amoebiphila;x__Candidatus Nucleicultrix amoebiphila FS5


ncbi_country: China: Huizhou

ncbi_isolation_source: sputum


ncbi_organism_name: Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: Riverside Soil

ncbi_organism_name: Flavobacterium humidisoli

ncbi_submitter: Chungnam National University


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-J22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: New Zealand: Auckland Combined

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_country: Peru

ncbi_isolation_source: Intra-abdominal abscess

ncbi_organism_name: Staphylococcus aureus DAR5849

ncbi_submitter: Broad Institute


ncbi_organism_name: Achromobacter animicus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: India: Lucknow

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Siksha 'O' Anusandhan (Deemed to be University), Bhubaneswar, Odisha


ncbi_country: China

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: Texas

ncbi_isolation_source: leaf

ncbi_organism_name: Pantoea sp. B566

ncbi_submitter: TEXAS A&M UNIVERSITY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Sorangium sp. So ce1014

ncbi_strain_identifiers: So ce1014

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1014


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Kiloniellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- Umea_bin-08653

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. VBCF_05 NA6

ncbi_strain_identifiers: VBCF_05 NA6

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Viet Nam

ncbi_isolation_source: Brassica juncea rhizosphere

ncbi_organism_name: Lysinibacillus sp. CD3-6

ncbi_submitter: ENDOBICA


ncbi_country: Rwanda: Huye

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda


ncbi_organism_name: Candidatus Chlorohelix sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;o__Candidatus Chloroheliales;f__Candidatus Chloroheliaceae;g__Candidatus Chlorohelix;x__unclassified Candidatus Chlorohelix;s__Candidatus Chlorohelix sp.


ncbi_country: Mozambique

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudomonas idahonensis

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: China: Hong Kong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Uniformed Services University


ncbi_isolation_source: marine water

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA5321

ncbi_submitter: University of Queensland


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_submitter: Lebanese American university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;x__unclassified Stenotrophomonas maltophilia group;s__Stenotrophomonas maltophilia group sp. CASM7


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chromatiaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Salmonella sp. NW358

ncbi_submitter: Sichuan University


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Methylotuvimicrobium alcaliphilum

ncbi_submitter: University of Valladolid


ncbi_organism_name: Hydrosulfovibrio ferrireducens

ncbi_submitter: Duisburg-Essen University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Micromonospora sp. NPDC050795

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Treponema denticola

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterobacter sp. PA-016-I-ECC

ncbi_submitter: TRAPREA


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_organism_name: Enterobacter sp. J706

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured bacterium


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_assembly_name: freshwater MAG --- KR_bin-0775

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3285

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Lund University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-90

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Myxococcales bacterium

ncbi_strain_identifiers: new MAG-90

ncbi_submitter: Micoorganism


ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;x__environmental samples;s__uncultured Parcubacteria group bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_country: USA: Arizona

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA

ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia anthina

ncbi_submitter: University of Michigan


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-N23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: Pneumonia Response and Surveillance Laboratory (CDC)


ncbi_country: China: Sichuan

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_isolation_source: Air sacs

ncbi_organism_name: Mycoplasmopsis gallopavonis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya

ncbi_isolation_source: trachea

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Masinde Muliro University of Science and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: intestinal content

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Anaerovibrio sp.

ncbi_submitter: EMBL-EBI


ncbi_country: USA: MN

ncbi_isolation_source: urine

ncbi_submitter: University of Minnesota


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Narathiwat

ncbi_isolation_source: food

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas jessenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12974

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: a feces sample of swine origin

ncbi_submitter: Yangzhou University


ncbi_organism_name: Orientia tsutsugamushi str. Gilliam

ncbi_strain_identifiers: Gilliam

ncbi_submitter: IGS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-425

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Zhejiang University


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Thailand

ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Acinetobacter baumannii 15827

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Microcoleus sp. F6_B6

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon aspirate

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of New Hampshire


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Acidovorax soli

ncbi_submitter: department of plant and microbial biology


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Kangiella aquimarina

ncbi_submitter: Cultivarium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.430 MAG

ncbi_isolate: bin.430 MAG

ncbi_isolation_source: North Pacific

ncbi_strain_identifiers: bin.430 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Russia: Babolovsky park; Pushkin; St. Petersburg

ncbi_isolation_source: reservoir inhabited by larvae of the genus Aedes

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_country: Belgium: Ghent

ncbi_isolation_source: top layer of a denitrification tank of a waste water treatment plant

ncbi_organism_name: Methylomonas methanica

ncbi_submitter: Ghent University


ncbi_country: USA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-1230

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Nitrospinaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pendulispora rubella

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: Rumen uncultured genome RUG14486

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Saprospira sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Conghua

ncbi_isolation_source: Freshwater pond

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-8667

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: Kosakonia cowanii strain I87

ncbi_organism_name: Kosakonia cowanii

ncbi_strain_identifiers: UFU I87

ncbi_submitter: Federal University of Uberlandia


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Nannocystis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Marinicella sediminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alysiella crassa

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: South Korea: Jeonnam Shinan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: SK

ncbi_submitter: National Institute of Fisheries Science


ncbi_organism_name: Tropheryma whipplei str. Twist

ncbi_strain_identifiers: Twist

ncbi_submitter: Genoscope


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Human

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_organism_name: Mycolicibacterium nivoides

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Arctic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Dietzia sp. KRD202

ncbi_submitter: Robert Gordon University


ncbi_isolation_source: Seafood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3986 T(B)13

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3986 T(B)13


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: BLOOD CULTURE

ncbi_organism_name: Klebsiella pneumoniae BIDMC 12B

ncbi_strain_identifiers: BIDMC 12B

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 12B


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Chile

ncbi_submitter: Universidad Autonoma de Chile


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2708743150 annotated assembly

ncbi_organism_name: Bacillus sp. V-88

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. V-88


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UC Irvine


ncbi_country: USA: Columbus; Ohio

ncbi_isolation_source: lab construct

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Ohio State University


ncbi_country: China: Ningbo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_isolation_source: sludge from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Portugal: Sta Maria Feira

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium CG_4_9_14_3_um_filter_36_7


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Alabama; DeKalb

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Auburn University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 416

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 2936

ncbi_submitter: University of Calgary


ncbi_submitter: Southwest Medical University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: I.V. Cannula

ncbi_organism_name: Acinetobacter baumannii NIPH 2061

ncbi_strain_identifiers: NIPH 2061

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 2061


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Spain

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: GA; Athens

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Pseudooceanicola sp. HF7

ncbi_submitter: University of Georgia


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_isolation_source: Wetland

ncbi_organism_name: Comamonas koreensis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-471

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Department of Clinical Laboratory Medicine, Saitama medhical university


ncbi_country: Antarctica: Tokarev Island; Archipelago Haswell

ncbi_isolation_source: guano

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sungkyunkwan University School of Pharmacy


ncbi_organism_name: Candidatus Scatocola faecigallinarum


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Actinomyces culturomici

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: soil

ncbi_organism_name: Sediminibacillus terrae

ncbi_submitter: College of Biology and Environmental Sciences


ncbi_isolation_source: gut content

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Aeromonas media

ncbi_submitter: Agroscope


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf85

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Shandong

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Hong Kong

ncbi_isolation_source: genital

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Verrucomicrobia bacterium UBA1412

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1412


ncbi_organism_name: Streptomyces sp. NPDC127113

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Vienna


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Yoonia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Mycolicibacterium nivoides

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sanglieri

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Nonomuraea sp. NPDC050227


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: National Research Council Canada


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes inops

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rio Hondo Golf Course; Downey; California

ncbi_isolation_source: Dead Mole Cricket

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UCR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Guangzhou

ncbi_isolation_source: hospital patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_submitter: The Lu'an People's Hospital


ncbi_isolation_source: Wound

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacterium sp. S8

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: marine water

ncbi_organism_name: Pontimicrobium aquaticum

ncbi_submitter: Chung-Ang University


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Main Ward

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020056884

ncbi_submitter: Broad Institute


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Portugal

ncbi_organism_name: Paucisalibacillus globulus DSM 18846

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: processed sugarcane

ncbi_organism_name: Paenibacillus sp. 598K

ncbi_submitter: Laboratory of Bioinformatics, Department of Molecular Microbiology, Faculty of Life Sciences, Tokyo University of Agriculture


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Clostridium sp. AF37-5

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: USA: AZ

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Auburn University


ncbi_country: Slovenia

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: ECTOBIsp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Elulimicrobium sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Candidatus Elulimicrobiota;c__Candidatus Elulimicrobia;o__Candidatus Elulimicrobiales;f__Candidatus Elulimicrobiaceae;g__Candidatus Elulimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Elulimicrobiota;c__Candidatus Elulimicrobia;o__Candidatus Elulimicrobiales;f__Candidatus Elulimicrobiaceae;g__Candidatus Elulimicrobium;x__unclassified Candidatus Elulimicrobium;s__Candidatus Elulimicrobium sp.


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Yale University


ncbi_organism_name: Nitrolancea sp.

ncbi_submitter: Zhejiang University


ncbi_country: Turkmenistan

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Barranquilla

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Winogradskyella wandonensis

ncbi_strain_identifiers: CECT 8445

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: intestine environment [ENVO:2100002]

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Kansas State University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: Enterococcosel

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Raw material of pellet

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Sulfitobacter sp. D35

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces johnsoniae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon aspirate

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: uncultured Thalassolituus sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: infected leaves

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: Pacific Ocean: Hydrate Ridge North

ncbi_isolation_source: sample #5579; elevator 3A push core 41 containing 12 cm of sediment; collected at Hydrate Ridge North during Jason II dive J2-593 from an area of active seepage marked by bubble ebullition and surface expression of white microbial mat

ncbi_organism_name: Desulfuromonadales bacterium C00003107

ncbi_submitter: California Institute of Technology


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Rhodospirillales bacterium


ncbi_country: Armenia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces violens

ncbi_strain_identifiers: NRRL ISP-5597

ncbi_submitter: University of Illinois


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Tharpella sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Tharpellota;c__Candidatus Tharpellia;o__Candidatus Tharpellales;f__Candidatus Tharpellaceae;g__Candidatus Tharpella;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Tharpellota;c__Candidatus Tharpellia;o__Candidatus Tharpellales;f__Candidatus Tharpellaceae;g__Candidatus Tharpella;x__unclassified Candidatus Tharpella;s__Candidatus Tharpella sp.


ncbi_organism_name: Streptomyces sp. NBC_01294

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Hainan University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F42556

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Microcoleus sp. S36b_A3

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pelagimonas sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Chitinophaga sancti


ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Cloacimonetes bacterium SCGC AAA252-I11

ncbi_strain_identifiers: SCGC AAA252-I11

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium SCGC AAA252-I11


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: stool

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000958


ncbi_country: China: Guangxi

ncbi_isolation_source: BALF

ncbi_organism_name: Streptomyces gardneri

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Synechococcus sp. bin52

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Israel: Dead Sea near Ein Gedi

ncbi_isolation_source: salt lake

ncbi_organism_name: Rhodovibrio sodomensis

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: PUS

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Radboudumc


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 3

ncbi_isolation_source: Acid mine drainage site biofilm from emergence

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_strain_identifiers: MAG 3

ncbi_submitter: University of California Davis


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy: Naples; Cotugno Hospital

ncbi_isolation_source: guinea pig infected with blood from typhus patient

ncbi_organism_name: Rickettsia prowazekii

ncbi_submitter: cBio Corp


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: Eubacterium ruminantium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Thailand: Nong Khai

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: slush of soda lake

ncbi_organism_name: Thioalkalivibrio versutus

ncbi_submitter: Institute of Process Engineering, Chinese Academy of Sciences


ncbi_country: China: Wuhan

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Huazhong University of Science and Technology


ncbi_country: USA: Washington State

ncbi_isolation_source: food (pork)

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Darwin; NT

ncbi_isolation_source: Microcerotermes nervosus termite mound periphery

ncbi_organism_name: Acidothermales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Denmark

ncbi_isolation_source: wheat straw

ncbi_organism_name: Thermoclostridium stercorarium

ncbi_submitter: North Carolina State University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: Mexico: Jalisco

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: uncultured Ardenticatenaceae bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Desulfuromonadales bacterium GWD2_54_10

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan: Motobu; Okinawa

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saudi food and drug authority


ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Rickettsia helvetica

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: MI

ncbi_organism_name: Rhodococcus sp. 05-2221-1B

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2221-1B


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_submitter: City University of Hong Kong


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Saint Margaret

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0086

ncbi_submitter: Broad Institute


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: CAU


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Navamindradhiraj University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Phycisphaerae bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-4497

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Chicago; IL; Near Lake Michigan on the Museum Campus

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus naphthalenovorans

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_strain_identifiers: FA

ncbi_submitter: MacLea Laboratory


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Patient

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: China: Jiangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Sil RS 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Hohhot

ncbi_isolation_source: sour goat milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_country: USA:Colorado; Denver

ncbi_isolation_source: Human blood

ncbi_organism_name: Cellulomonas denverensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Guatemala

ncbi_organism_name: Shigella dysenteriae 1617

ncbi_submitter: Armed Forces Research Institute of Medical Sciences U.S. Army Medical Component Department of Enteric Diseases


ncbi_isolation_source: human stool

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Planctellipticum variicoloris

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC050848

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: VA

ncbi_isolation_source: water gallon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Italy: Pisa

ncbi_isolation_source: rectal swab

ncbi_submitter: Sapienza University of Rome