ncbi_country: USA

ncbi_isolation_source: Thigh Biopsy

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Northern Arizona University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_level: Contig

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Streptomyces griseorubiginosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Actinomyces sp. HMSC08A01

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: India: Lonar Lake in Buldhana district of Maharashtra State

ncbi_isolation_source: soil sample from the vicinity of an alkaline salt water meteorite lake

ncbi_organism_name: Streptomyces lonarensis

ncbi_refseq_category: reference genome

ncbi_submitter: Southern Oregon Univeristy

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: IMG-taxon 2675903164 annotated assembly

ncbi_organism_name: Roseivivax halotolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas fluorescens NZ011

ncbi_submitter: The Sainsbury Laboratory


ncbi_assembly_level: Chromosome

ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: Sarnia oil refinery

ncbi_isolation_source: Carbon granules from GAC filter

ncbi_organism_name: Candidatus Manganitrophus sp.

ncbi_submitter: Western University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;g__Candidatus Manganitrophus;x__unclassified Candidatus Manganitrophus;s__Candidatus Manganitrophus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan: Hokkaido

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Selenomonas noxia

ncbi_submitter: EMG


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1179

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1179


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Daegu Catholic University School of Medicine


ncbi_country: Spain: Madrid

ncbi_organism_name: Moraxella pluranimalium

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavonifractor plautii


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sp. AM22-11AC

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04609

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Pondicherry University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Ghent University


ncbi_country: China: Guigang

ncbi_isolation_source: Soil from swine farm

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Chinese Academy Of Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Streptomyces sp. NPDC050759

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nonomuraea bangladeshensis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Megasphaera sp. WILCCON 0056

ncbi_strain_identifiers: WILCCON 0056

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia marcescens

ncbi_submitter: North Carolina State University


ncbi_organism_name: Candidatus Deferrimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;x__unclassified Candidatus Deferrimicrobium;s__Candidatus Deferrimicrobium sp.


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: pig gut metagenome


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Bremerella sp.

ncbi_submitter: Jinan University


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Dermatophilaceae bacterium


ncbi_organism_name: Alistipes sp.


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: TCI Co., Ltd.


ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Aeromonas sp. S5(2024)

ncbi_submitter: the Chinese University of Hong Kong


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_country: Argentina: Cordoba; Marcos Juarez

ncbi_organism_name: Curtobacterium sp. Arg-1

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Escherichia coli KTE201

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P40C2

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P40C2


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Himalayan mountain soil

ncbi_organism_name: Kitasatospora sp. MBT63

ncbi_submitter: Institute of Biology, Leiden University


ncbi_country: Turkmenistan: Darvaz

ncbi_isolation_source: Desert soil

ncbi_organism_name: Shimazuella alba

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_assembly_name: Rumen uncultured genome RUG10216

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: HuaZhong Agriculture University


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_submitter: Guangzhou Medical University


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium VRE1261

ncbi_submitter: Swedish Institue for Communicable Disease Control


ncbi_country: Brazil: Southwest

ncbi_isolation_source: fecal swab

ncbi_submitter: University of Sao Paulo


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Paenalcaligenes sp.

ncbi_submitter: Colorado State University


ncbi_country: India

ncbi_isolation_source: stool sample

ncbi_organism_name: Pelistega indica

ncbi_submitter: National Centre for Cell Science


ncbi_country: Australia

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWA2_43_24


ncbi_organism_name: uncultured Parvibaculum sp.

ncbi_submitter: EMG


ncbi_country: Russia: St.Peterburg

ncbi_isolation_source: fish; semi-finished product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Switzerland: lake Zug

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Crenothrix sp. D3

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolate: ATA bin18

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: ATA bin18

ncbi_submitter: Monash University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA:Delaware Bay; Delaware

ncbi_isolation_source: bay water spring sample 20 PSU in greater than .8 micron size fraction

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas sp. ML2-2023-6

ncbi_submitter: Macquarie University


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_country: South Africa: Durban

ncbi_isolation_source: Rectum

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Africa: Mookgopong

ncbi_isolation_source: Worker head

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Mn106-1 head2 chi

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: Resp Cx

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Douglas Channel

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_isolation_source: Complejo Hospitalario Universitario de Albacete (Albacete)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_assembly_name: freshwater MAG --- B12_bin-3186

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Russia: Moscow region

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SRCAMB


ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter amalonaticus


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Haifa


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centro de Investigaciones Biologicas del Noroeste S.C


ncbi_organism_name: Paenibacillus sp. FSL R7-0652

ncbi_submitter: Penn State


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Brevundimonas sp. TSPC3-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University Duisburg-Essen


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;f__Candidatus Absconditicoccaceae;x__unclassified Candidatus Absconditicoccaceae;s__Candidatus Absconditicoccaceae bacterium


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Malaysia: HUSM Kubang Kerian

ncbi_isolation_source: CNS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UiTM Cawangan Sarawak Kampus Mukah


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Psychrobacter sp.


ncbi_strain_identifiers: CNCI 3

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_assembly_name: Arsenophonus sp. (Ceratovacuna japonica) strain CjNOSY1 v. 1.0

ncbi_country: Japan:Nagano; Norikura

ncbi_isolation_source: whole body of the eusocial aphid; Ceratovacuna japonica strain NOSY1

ncbi_organism_name: Arsenophonus endosymbiont of Ceratovacuna japonica

ncbi_submitter: Laboratory of Evolutionary Genomics, National Institute for Basic Biology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Armatimonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Qipengyuania sp. R86523

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardia fluminea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTsouthwestern Medical Center


ncbi_organism_name: uncultured Polynucleobacter sp.


ncbi_genome_category: derived from single cell

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: Fictibacillus sp. NRS-1165

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus montaniterrae

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: CVUAS 11699

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: SciBear LLC


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Serratia inhibens

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_isolation_source: gut

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_isolation_source: organic manure

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Asturias

ncbi_isolation_source: Cabrales Cheese

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: IPLA-CSIC


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Czech Republic: Ortvinovice

ncbi_isolation_source: Sludge of pond dam

ncbi_organism_name: Acinetobacter modestus

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Yuncheng; Shandong

ncbi_isolation_source: compost sample from farm

ncbi_organism_name: Comamonas serinivorans

ncbi_submitter: Jiangsu University


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1015

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: forest soil

ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: USA: Boise; ID

ncbi_isolation_source: Breast meat

ncbi_submitter: Broad Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: IBSD


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: epithelial cells

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_country: Mexico: Xico; Veracruz

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCGUVB4N

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: Indonesia: hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Manitoba


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: NHS Scotland

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: USA: Cleveland

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Dorea sp. YH-dor228

ncbi_submitter: ABS Research Support Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Uganda: Mbararam

ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: JCVI


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Manitoba

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: Rain

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: stool

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_assembly_name: IMG-taxon 2675903036 annotated assembly

ncbi_organism_name: Nitrosomonas sp. Nm58

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis PM221

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florence, Florence, Italy


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy: Pavia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pavia


ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_country: Austria

ncbi_isolation_source: Industrial environment

ncbi_organism_name: Brucella intermedia

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_country: Belgium

ncbi_isolation_source: Chest abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Centre pasteur du Cameroun


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Kribbella sandramycini

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Siena College


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillus cereus group sp. BceL189

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL189


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: uncultured Syntrophales bacterium


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: JAYPEE INSTITUTE OF INFORMATION TECHNOLOGY


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Micromonospora globbae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Nakamurella lactea

ncbi_submitter: University of South Africa


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Clinical

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Exeter University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Rakuno Gakuen University


ncbi_country: China

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Copromorpha sp.

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;x__unclassified Candidatus Copromorpha;s__Candidatus Copromorpha sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: the hong kong university of science and technology


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Shigella flexneri 2002017

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: USA: Boston

ncbi_submitter: University of Oxford


ncbi_country: Turkey

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Black Sea Agricultural Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China:Taibai mountain; Qinling; Shaanxi Province

ncbi_isolation_source: roots

ncbi_organism_name: Paenibacillus qinlingensis

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil

ncbi_isolation_source: Drag Swab

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium prati

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human skin

ncbi_organism_name: Flavobacterium lindanitolerans

ncbi_submitter: NHGRI/NIH


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: enrichment culture inoculated with sediment from anoxic soda lake

ncbi_organism_name: Tindallia sp. MSAO_Bac2

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- KT_bin-1124

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: BILS


ncbi_organism_name: Ructibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: Stool

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489


ncbi_isolation_source: infected leaves

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Mycobacterium tuberculosis HSZ10223

ncbi_organism_name: Mycobacterium tuberculosis 1034

ncbi_submitter: Lanzhou University


ncbi_organism_name: Microbacterium mitrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_assembly_name: Rumen uncultured genome RUG12261

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Washington


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Ideonella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: India: Meghalaya

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Peptacetobacter sp. AB800

ncbi_submitter: AnimalBiome Inc


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University at Buffalo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-40

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_strain_identifiers: new MAG-40

ncbi_submitter: Micoorganism


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: University of Queensland


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Oxford


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Sao Carlos

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Trinidad and Tobago

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of the West Indies


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: Cincinnati; OH

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: Belarus: Salihorsk District

ncbi_isolation_source: potash salt dump

ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: BIM B-1314D

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences


ncbi_country: South Korea: Seoul

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jeonbuk National University


ncbi_country: France: Rennes

ncbi_submitter: University of Rennes 1


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: CCTCC

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Wuhan University


ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rhodobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ruzzini Lab


ncbi_organism_name: Streptomyces sp. NPDC057445

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Central Texas Vetrans Healthcare system


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA2157

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2157


ncbi_organism_name: Salmonella sp. SAL4355

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Ornithomonoglobus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithomonoglobus;x__unclassified Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus sp.


ncbi_organism_name: uncultured bacterium


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: Brazil:Mato Grosso

ncbi_isolation_source: minigarden for teak propagation

ncbi_organism_name: Xanthomonas citri

ncbi_submitter: Universidade de Brasilia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Bacillus cereus AH187

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus AH187


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: Coking wastewater activated sludge

ncbi_organism_name: Ottowia beijingensis

ncbi_submitter: institut hospitalo universitaire mediterranee infection


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Argentina

ncbi_isolation_source: Bone

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Facultad de Medicina, Universidad de Buenos Aires


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Uncultured Candidatus Berkiella sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Berkiellales;f__Candidatus Berkiellaceae;g__Candidatus Berkiella;x__environmental samples;s__Uncultured Candidatus Berkiella sp.


gtdb_type_species_of_genus: t

ncbi_isolation_source: stool

ncbi_organism_name: Leminorella grimontii

ncbi_submitter: Bacteriology Microbiology, Osaka Institute of Public Health


ncbi_organism_name: Novosphingobium pokkalii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5353

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5353


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Brucella sp. NVSL 07-0026

ncbi_submitter: Broad Institute


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: North West Territories; Daring Lake region

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp. AR07

ncbi_submitter: Queen's University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Roseibacillus sp.

ncbi_submitter: EMG


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21318


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_country: South Korea

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus massiliensis;sb__Paenibacillus massiliensis subsp. panacisoli;x__Paenibacillus massiliensis subsp. panacisoli DSM 21345


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Mycobacterium ulcerans

ncbi_submitter: Research Institute of Tuberculosis


ncbi_organism_name: Pantoea phytobeneficialis

ncbi_submitter: UFSC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: North-West University


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- LinL3_bin-0404

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA

ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: India: Mizoram

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Canada: Alberta

ncbi_organism_name: Campylobacter canadensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1910R

ncbi_submitter: Broad Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T78544


ncbi_assembly_name: Rumen uncultured genome RUG512

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Alabama

ncbi_isolation_source: air filter

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Italy: Milano

ncbi_isolation_source: Endobronchial swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: S.Orsola-Malpighi University Hospital


ncbi_country: Germany: Mecklenburg-Vorpommern

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_isolation_source: stool

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: bone

ncbi_submitter: URMC


ncbi_assembly_name: Pseudovibrio sp. Alg231_02

ncbi_isolate: Pseudovibrio sp. Alg231_02

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudovibrio sp. Alg231-02

ncbi_strain_identifiers: Pseudovibrio sp. Alg231_02

ncbi_submitter: Elham Karimi


ncbi_assembly_name: BSN03 Closure

ncbi_country: USA: Detroit; MI

ncbi_isolation_source: blood

ncbi_submitter: Wayne State University


ncbi_country: Portugal

ncbi_isolation_source: Ixodes frontalis

ncbi_organism_name: Borreliella turdi

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Australia: Queensland

ncbi_isolation_source: Formation water

ncbi_organism_name: Desulfuromonas sp. CSMB_57

ncbi_submitter: CSIRO


ncbi_country: Brazil: Santos

ncbi_isolation_source: cloaca

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Salmonella sp. s60093

ncbi_submitter: Zhejiang university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: stanford university school of medicine


ncbi_strain_identifiers: kraussei Becker Underwood

ncbi_submitter: UWM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Xenorhabdus;s__Xenorhabdus bovienii;x__Xenorhabdus bovienii str. kraussei Becker Underwood


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: skin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: jiangnan


ncbi_country: Australia: Newcastle

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: University of Queensland


ncbi_country: China: Hebei

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Microcoleus sp. S36a_B3

ncbi_submitter: Palacky University Olomouc


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: East Timor

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tropicimonas sp. S265A

ncbi_submitter: Shenzhen University


ncbi_organism_name: Salmonella sp. SKLX107357

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella sp. NW1114

ncbi_submitter: Sichuan University


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus thuringiensis serovar kurstaki

ncbi_submitter: Anses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki


ncbi_organism_name: Cupriavidus oxalaticus

ncbi_submitter: University of Science Malaysia


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus fungorum

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: cold seep

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 8

ncbi_submitter: USDA-ARS


ncbi_country: Iraq

ncbi_isolation_source: lesion

ncbi_organism_name: Treponema pallidum subsp. endemicum

ncbi_strain_identifiers: Iraq B

ncbi_submitter: Masaryk University, Faculty of Medicine


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Brown University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Campylobacteraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Poultry Meat (Wings)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Queensland


ncbi_organism_name: Lentibacillus kimchii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus sp. AFS031507

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS031507


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7123


ncbi_country: USA: Maryland

ncbi_isolation_source: environmental

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Paraburkholderia sacchari

ncbi_submitter: College of Resources and Environmental science


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2606

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: Urine; cytoscopy

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Penn State


ncbi_country: South Korea

ncbi_isolation_source: soil of a ginseng field

ncbi_organism_name: Brachybacterium ginsengisoli

ncbi_submitter: Kyung Hee University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Sphingomonas sanxanigenens


ncbi_country: Italy: Pavia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pavia


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Gemmatirosa kalamazoonensis

ncbi_submitter: University of Tennessee


ncbi_country: USA: Echo; Oregon

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Alloprevotella sp.


ncbi_country: Russia: Uzon Caldera; Kamchatka

ncbi_isolation_source: Terrestrial hot spring

ncbi_organism_name: Ammonifex thiophilus

ncbi_strain_identifiers: SR

ncbi_submitter: Winogradsky Institute of Microbiology


ncbi_country: Egypt

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: University of Florida


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Heilongjiang

ncbi_isolation_source: Frozen drink

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Pantoea sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Streptomyces ramulosus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: vagina

ncbi_organism_name: Porphyromonas somerae

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Raymondiibacteriota;s__Candidatus Raymondbacteria bacterium RifOxyB12_full_50_8


ncbi_country: Australia: Melbourne

ncbi_isolation_source: disintigrated concrete from an outflow sewer

ncbi_organism_name: Halothiobacillus neapolitanus c2

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_assembly_name: IMG-taxon 2675903147 annotated assembly

ncbi_organism_name: Sphingobacterium lactis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Microcoleus sp. F8-C1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Chitinispirillales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_submitter: Institut Pasteur


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC101249

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Streptomyces niveus


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp4 AA21

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp4 AA21

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Gracilimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Janibacter terrae

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Niallia nealsonii AAU1

ncbi_submitter: Anand Agricultural University


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Comamonas testosteroni


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Maribacter sp. HTCC2170

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Ares Genetics


ncbi_country: Italy

ncbi_isolation_source: faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Roseateles asaccharophilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_submitter: Northeastern University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ellagibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:678

ncbi_submitter: DTU


ncbi_country: Singapore

ncbi_isolation_source: Farm water

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: University of Chicago


ncbi_organism_name: Trichocoleus desertorum GB2-A4

ncbi_submitter: Institute of Hydrobiology


ncbi_country: France

ncbi_isolation_source: baby blood culture

ncbi_submitter: UMR9198, Universite Paris Saclay

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Czech Republic

ncbi_isolation_source: clinical

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_assembly_name: Rumen uncultured genome RUG10247

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Microbacterium sp. NPDC089180

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG345

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Limosilactobacillus fermentum


ncbi_organism_name: Saccharopolyspora gloriosae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China: Donggang

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ghent University


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Rhodobacterales bacterium FZCC0083

ncbi_submitter: Chinese university of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: root from Arable land

ncbi_organism_name: Pseudomonas sp. A-RE-15

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Bradyrhizobium guangxiense

ncbi_strain_identifiers: CCBAU 53363

ncbi_submitter: The University of Sydney


ncbi_assembly_name: freshwater MAG --- KR_bin-1539

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa LESB58

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_assembly_name: Rumen uncultured genome RUG461

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG11191

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mucilaginibacter sp. FT3.2


ncbi_country: Norway

ncbi_isolation_source: Nose

ncbi_organism_name: Kingella kingae

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces bangladeshensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Mycolicibacterium arabiense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H38239

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechocystis sp. FACHB-929

ncbi_submitter: South China Normal University


ncbi_country: USA: GA

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: DMB SH20200

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_assembly_name: Shigella dysenteriae strain SD1D

ncbi_country: India

ncbi_organism_name: Shigella dysenteriae SD1D

ncbi_submitter: CSIR-IMTECH


ncbi_assembly_name: Rumen uncultured genome RUG13348

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Gardnerella sp. DNF01180P

ncbi_submitter: Fred Hutch


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_submitter: Colorado State University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Falsiroseomonas tokyonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Trunk River; Woods Hole; MA

ncbi_isolation_source: Estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Veillonella sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Guiyang and Nanxiong

ncbi_isolation_source: isolated from the tobacco substrate

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Guangdong Academy of Agricultural Science Crops Research Institute


ncbi_country: South Africa: Capetown

ncbi_isolation_source: flocculating fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: China: Beijing

ncbi_submitter: Chinese Academy of Agricultural Sciences Institute of Plant Protection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;s__Streptomyces avermitilis;x__Streptomyces avermitilis MA-4680 = NBRC 14893


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Agricultural University of Athens


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1678

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Galactobacter sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Northumbria University


ncbi_assembly_name: Rumen uncultured genome RUG13232

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: Crew Resupply Vehicle

ncbi_isolation_source: CRV environmental surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxic seawater

ncbi_organism_name: Candidatus Micropelagius thuwalensis

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;g__Candidatus Micropelagius;s__Candidatus Micropelagius thuwalensis


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44298_10

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Romania: Cluj

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan