ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_representative: f

ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Scaffold

ncbi_country: Antarctica

ncbi_isolation_source: beach sediment

ncbi_organism_name: Paraglaciecola sp. 20A4

ncbi_submitter: Shandong University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Clostridioides difficile CD37

ncbi_submitter: UCL Eastman Dental Institute


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Corynebacterium sp. KPL1860

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD0_bin-1261

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_level: Complete Genome

ncbi_submitter: Virginia Polytechnic Institute and State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis TI0902;x__Francisella tularensis subsp. tularensis TIGB03


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_country: USA: MD

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae SK36809

ncbi_submitter: Read Laboratory, Emory University


ncbi_isolate: Psychrobacter cibarius JG-219

ncbi_isolation_source: jeotgal

ncbi_organism_name: Psychrobacter cibarius

ncbi_strain_identifiers: Psychrobacter cibarius JG-219

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: empyema drain in an infected lung in South East Asia

ncbi_organism_name: Burkholderia pseudomallei B7210

ncbi_submitter: NMRC


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SWYJ118

ncbi_submitter: Shandong University


ncbi_organism_name: Streptomyces microflavus

ncbi_strain_identifiers: NRRL 2249

ncbi_submitter: USDA Agricultural Research Service


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_country: Italy: Bologna

ncbi_isolation_source: Necrotic pancreatic tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: University of Miyazaki


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Cardiobacteriaceae bacterium


ncbi_country: Italy: Florence

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Haemophilus parahaemolyticus


ncbi_country: United Kingdom

ncbi_isolation_source: adult insect on Urtica dioica

ncbi_organism_name: Buchnera aphidicola (Microlophium carnosum)

ncbi_submitter: Queen Mary University of London


ncbi_organism_name: Escherichia coli

ncbi_submitter: Case Western Reserve University


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Czech Republic: Ceske Budejovice

ncbi_isolation_source: Water

ncbi_organism_name: Pragia fontium

ncbi_refseq_category: reference genome

ncbi_submitter: SC


ncbi_isolation_source: poultry farm

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13298

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: nankai university


ncbi_isolation_source: wild Drosophila

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Brigham Young University


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Acidimicrobium ferrooxidans DSM 10331

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: liver

ncbi_submitter: Shanghai Veterinary Research Institute, CAAS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli EC4203

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: lake water

ncbi_organism_name: Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_strain_identifiers: 12i spring

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Sphingomonas floccifaciens

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudidiomarina donghaiensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Caldithrix sp.


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-00059

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Russia: Moscow

ncbi_submitter: SRCAMB


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_46_13


ncbi_organism_name: Agromyces bauzanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: Abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: mid-stream urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: East China Sea

ncbi_isolation_source: sediments

ncbi_organism_name: Marinomonas shanghaiensis

ncbi_submitter: Shanghai Ocean University


ncbi_country: New Zealand: Te Puke

ncbi_isolation_source: kiwifruit orchard

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: New Zealand Institute for Plant and Food Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli G58-1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Rothia sp. HSID18067

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HSID18067


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0028

ncbi_submitter: Broad Institute


ncbi_country: Poland

ncbi_isolation_source: Food: Red deer meat

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Zurich


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway: Oslo

ncbi_isolation_source: hospital

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Oslo University Hospital, Rikshopitalet


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-P23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia

ncbi_isolation_source: Pathology sample

ncbi_organism_name: Solobacterium moorei

ncbi_submitter: La Trobe University


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: India: Kerala; Thiruvananthapuram; Trivandrum Medical College; Chalakkuzhi

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: USA: Falmouth; MA

ncbi_isolation_source: topsoil

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: MBL

ncbi_submitter: California Institute of Technology


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA25

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_organism_name: Buchnera aphidicola (Pseudoregma panicola)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_country: USA: Massachusetts

ncbi_isolation_source: potato

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: University of Maine


ncbi_country: Thailand

ncbi_isolation_source: shrimp pond sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Mahidol University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Tectimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;s__Candidatus Tectimicrobiota bacterium


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Guangdong

ncbi_isolation_source: wall

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Megasphaera micronuciformis


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow lung

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6572


ncbi_organism_name: Phocaeicola sartorii


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Rothia mucilaginosa


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Marivirga lumbricoides

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Xanthomonas axonopodis pv. fascicularis

ncbi_strain_identifiers: NCPPB 2230

ncbi_submitter: University of Exeter


ncbi_country: Belarus:Barysaw District

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: BIM B-454D

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Spain: Canary Islands

ncbi_isolation_source: volcanic mountain soil

ncbi_organism_name: Noviherbaspirillum soli

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: Nigeria

ncbi_strain_identifiers: IBSBF 285

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 285


ncbi_country: USA: inshore coral nursery; Key West; FL

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Vibrio sp. Of7-15

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia: Moscow region

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2928

ncbi_strain_identifiers: VKM Ac-2928

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfotomaculaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Halomonas rhizosphaerae

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_organism_name: uncultured Intestinibacter sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolate: SPRUCE 500

ncbi_organism_name: Bradyrhizobium sp.

ncbi_strain_identifiers: SPRUCE 500

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Chromosome

ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Christensenellales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centre de Bioinformatique de Bordeaux


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: BGI Research


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: solid retention time of 6 days

ncbi_organism_name: Mesosutterella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_organism_name: Cellulophaga baltica

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Ireland

ncbi_isolation_source: Cork

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University College Cork


ncbi_country: France: Rocamadour PDO area

ncbi_isolation_source: raw milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Toulouse Biotechnology Institute


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Helicobacter pylori SA171C

ncbi_submitter: MHH


ncbi_country: China: Yellow Sea

ncbi_isolation_source: marine intertidal sediment

ncbi_submitter: shandong university


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: pig

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Henan Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_country: China: Yunnan

ncbi_isolation_source: lake water

ncbi_organism_name: Rhodanobacteraceae bacterium XH05

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: IMG-taxon 2622736503 annotated assembly

ncbi_organism_name: Fontimonas thermophila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0395R

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Caproicibacter sp. BJN0012

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Seattle University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan:Fukuoka prefecture

ncbi_isolation_source: not known


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Candidatus Aalborgicola bjergmarkensis

ncbi_submitter: Aalborg University


ncbi_submitter: EMG


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LinL1_bin-0944

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Glutamicibacter sp. AOP12-B1-11

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Hadeer Aly Ibrahim Aly Morgaan


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1125

ncbi_submitter: Broad Institute


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maryland

ncbi_organism_name: Mesoplasma corruscae

ncbi_submitter: Academia Sinica


ncbi_country: Thailand

ncbi_isolation_source: stem

ncbi_organism_name: Sphingobium sp. Sx8-8

ncbi_submitter: Faculty of Science, Chulalongkorn University


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-270

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: new MAG-270

ncbi_submitter: Micoorganism


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: MA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 61 (174a)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 61 (174a)


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Brisbane

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: The University of Queensland


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Hominimerdicola aceti

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Russia: Moskva River

ncbi_isolation_source: Mud

ncbi_organism_name: Zavarzinia compransoris

ncbi_submitter: Chung-Ang University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Pseudomonas qingdaonensis


ncbi_organism_name: Candidatus Acutalibacter ornithocaccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Cohnella caldifontis

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_assembly_name: IMG-taxon 2585428144 annotated assembly

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Brown University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Sichuan Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: USA

ncbi_isolation_source: Roquefort Cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Lunds Universitet


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Chloroflexi bacterium UBA4669

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium UBA4669


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Wolbachia sp. wLmal

ncbi_strain_identifiers: wLmal

ncbi_submitter: University of Minnesota


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Cadiz


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Uniformed Services University


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Actinobacteria bacterium UC5.1-1C2

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo


ncbi_country: USA: AL

ncbi_isolation_source: tuna salad

ncbi_organism_name: Morganella morganii

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- VK2_bin-1610

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_assembly_name: Complete genome of Sulfitobacter sp. LCG007

ncbi_organism_name: Roseobacteraceae bacterium LCG007

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Manitoba


ncbi_country: Saudi Arabia

ncbi_organism_name: Escherichia coli


ncbi_country: New Zealand: North Canterbury; Ashley River Estuary

ncbi_submitter: University of Canterbury


ncbi_organism_name: Paraprevotella clara


ncbi_country: Costa Rica:Cuenca Murcielago

ncbi_isolation_source: Cuenca Murcielago travertine

ncbi_organism_name: Cyanobacteria bacterium UBA999

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA999


ncbi_assembly_name: Rumen uncultured genome RUG11340

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Japan

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Infectious Diseases, Kyorin University School of Medicine


ncbi_country: Thailand

ncbi_isolation_source: root

ncbi_organism_name: Aureimonas sp. SK2

ncbi_submitter: SSRU


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Ningxia Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bradyrhizobium elkanii CCBAU 05737

ncbi_strain_identifiers: CCBAU 05737

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: Saline soil

ncbi_organism_name: Halomonas alkalisoli

ncbi_submitter: Inner Mongolia university


ncbi_country: Israel: Beer-Sheva

ncbi_isolation_source: Oropharyngeal Swab

ncbi_organism_name: Kingella negevensis

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Iowa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Candidatus Phaeomarinibacter sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0135

ncbi_submitter: Broad Institute


ncbi_isolation_source: Small intestine

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli KTE229


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI1058

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: San Jose; CA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Kenya

ncbi_isolation_source: urine

ncbi_submitter: MMUST biological


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: rumen

ncbi_organism_name: Acidaminococcaceae bacterium UBA2812

ncbi_submitter: University of Queensland


ncbi_organism_name: Nocardioides oleivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Stenotrophomonas riyadhensis

ncbi_submitter: Centro de Ciencias Genomicas - UNAM


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Nitrospinaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Maricaulaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 976

ncbi_submitter: USDA-ARS


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0996

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: France: Paris

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Proteus mirabilis

ncbi_strain_identifiers: PmirR

ncbi_submitter: INSERM 1137


ncbi_country: China: Shandong

ncbi_isolation_source: fecal swabs from commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: blood

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_organism_name: uncultured Olsenella sp.


ncbi_isolation_source: patient environment

ncbi_submitter: University Hospital Muenster


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_submitter: City University of Hong Kong


ncbi_country: Brazil

ncbi_isolation_source: pecked egg yolk

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: feces

ncbi_submitter: Aarhus University Hospital


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Hunan

ncbi_organism_name: Acinetobacter sp. YH16037

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Beijing

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Australia: Sydney

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: Western Sydney University


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China:South Sea

ncbi_isolation_source: coral

ncbi_organism_name: Brevibacterium sp. W7.2

ncbi_submitter: Third Institute Of Oceanography,MNR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Roseovarius nubinhibens ISM

ncbi_strain_identifiers: ISM

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: Psychrobacter faecalis PBFP-1

ncbi_isolation_source: polar bear stool

ncbi_organism_name: Psychrobacter faecalis

ncbi_strain_identifiers: Psychrobacter faecalis PBFP-1

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli MP021017.6

ncbi_submitter: IGS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Sichuan

ncbi_isolation_source: Anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Cornell University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13991

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Eubacterium sp. AF19-17

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF19-17


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Zhejiang University of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Arsenophonus endosymbiont of Dermacentor nuttalli

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Vicinamibacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Pediococcus acidilactici 7_4

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus;x__Pediococcus acidilactici group;s__Pediococcus acidilactici;x__Pediococcus acidilactici 7_4


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pseudomonas sp. NBRC 111118

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of British Columbia


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Bacteriology, Basic Medicine, Kyushu University Faculty of Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10985

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: IMG-taxon 2622736518 annotated assembly

ncbi_organism_name: Mucilaginibacter polytrichastri

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands: wageningen

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eubacterium maltosivorans

ncbi_strain_identifiers: YI

ncbi_submitter: wageningen university and reasearch


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Taiwan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Taiwan University Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 24 days

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shantou University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: Boston

ncbi_isolation_source: blood sample

ncbi_organism_name: Francisella sp. MA067296

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Bradyrhizobium centrosematis

ncbi_strain_identifiers: SEMIA 424

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aurantibrevibacter litoralis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Crocinitomix sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Beijing Genome Institute


ncbi_country: China: Huzhou

ncbi_isolation_source: stool sample

ncbi_submitter: Huzhou cdc


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acholeplasma hippikon ATCC 29725


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-172

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_strain_identifiers: new MAG-172

ncbi_submitter: Micoorganism


ncbi_country: United Kingdom: VLA

ncbi_isolation_source: Laboratory reference strain

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_country: Atlantic Ocean

ncbi_isolation_source: North Atlantic Ocean

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Austria: Neusiedler See

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Lelliottia nimipressuralis


ncbi_country: Switzerland

ncbi_isolation_source: Salad

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Singapore

ncbi_isolation_source: rectal

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_organism_name: Lachnospiraceae bacterium 6_1_63FAA

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_01_FULL_33_13


ncbi_country: Antarctica

ncbi_isolation_source: intertidal sediment

ncbi_organism_name: Aureibaculum flavum

ncbi_submitter: Shandong University Qingdao Campus


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: China

ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Pseudochrobactrum asaccharolyticum

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Gar CS 4

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_submitter: Okinawa Institute of Advanced Sciences


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_country: Taiwan

ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-28

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_country: Poland

ncbi_organism_name: Hafnia alvei

ncbi_submitter: nankai university


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Sulfitobacter albidus

ncbi_submitter: Jeju National University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-125

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Halieaceae bacterium UBA5055

ncbi_submitter: University of Queensland


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Clostridiaceae bacterium BRH_c20a

ncbi_submitter: EPFL


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: University of Utah


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter sp. RM12651

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Longimicrobium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: fruit

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: La Trobe University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: Distal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Saudi Arabia

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Halobacteriovorax sp. HFRX-1_3

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 1813

ncbi_submitter: The University of Queensland


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12940

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Stanford University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Human rectal swab

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: WI

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Meleagridis


ncbi_submitter: University of Manchester


ncbi_organism_name: Thiohalobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: floral nectar

ncbi_organism_name: Acinetobacter nectaris

ncbi_submitter: Cornell University


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: feces

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Tidjanibacter massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC005900

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Chile: Los Lagos; Cahuelmo Hot Spring

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_organism_name: Hydrococcus sp. C42_A2020_068

ncbi_submitter: Pontificia Universidad Catolica de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Pleurocapsales;f__Hydrococcaceae;g__Hydrococcus;x__unclassified Hydrococcus (in: cyanobacteria);s__Hydrococcus sp. C42_A2020_068


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Liaoning

ncbi_submitter: China agricultural university


ncbi_organism_name: Caballeronia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Minisyncoccales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;s__Minisyncoccales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: Italy: Frasassi caves

ncbi_isolation_source: colonization device Net 2 floating at the air-water interface of the Frasassi cave system sulfidic spring

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Delaware


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: Botswana

ncbi_isolation_source: Ting

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_strain_identifiers: kraussei Quebec

ncbi_submitter: UWM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Xenorhabdus;s__Xenorhabdus bovienii;x__Xenorhabdus bovienii str. kraussei Quebec


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Respiratory Tract

ncbi_organism_name: Mycoplasmopsis bovirhinis

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lysinibacillus sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Lane County; Oregon

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: Oregon State University


ncbi_organism_name: Pantoea anthophila

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Streptomyces noursei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: PUl

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun-yat Sen University


ncbi_submitter: EMG


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Human

ncbi_organism_name: Mycobacterium riyadhense

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Nigeria: Akure

ncbi_isolate: IaulAkure

ncbi_isolation_source: whole tick

ncbi_organism_name: Candidatus Midichloria sp.

ncbi_strain_identifiers: IaulAkure

ncbi_submitter: University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bacteriovorax stolpii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: North Pond on the west flank of Mid-Atlantic Ridge

ncbi_isolation_source: pelagic marine sediments

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Antarctica

ncbi_organism_name: Marinobacter sp. ANT_B65

ncbi_submitter: UNICAMP


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Broad Institute


ncbi_organism_name: Nostoc sp. ChiSLP03a

ncbi_submitter: LANGEBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Brachyspira sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Fibrobacter sp. UBA4223

ncbi_submitter: University of Queensland


ncbi_country: Colombia

ncbi_isolation_source: Ascitic liquid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydiifrater volucris

ncbi_submitter: ANSES


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_assembly_name: IMG-taxon 2636416069 annotated assembly

ncbi_organism_name: Paenibacillus sp. cl130

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Congregibacter sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_organism_name: Candidatus Pelethousia gallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Pelethousia;s__Candidatus Pelethousia gallinarum


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0482

ncbi_submitter: The University of Queensland


ncbi_organism_name: Alcanivorax borkumensis

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacillus sp. YIM B13410

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13410


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Center for Biotechnology


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Gemella sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_country: Kosovo

ncbi_isolation_source: stray dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: tip from a venous catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Bacillus sp. FSL K6-3846

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3846


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-06273

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Roseomonas sp. CCTCC AB2023176

ncbi_strain_identifiers: CCTCC AB2023176

ncbi_submitter: Wuhan University


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Urine

ncbi_submitter: WTSI


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1736

ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: USA

ncbi_isolation_source: iceberg head of lettuce

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 80959-06


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Bacillus sp. LK2

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LK2


ncbi_country: Ghana

ncbi_isolation_source: Animal (cattle)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 72.A.52


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Limadaptatus stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limadaptatus;s__Candidatus Limadaptatus stercoravium


ncbi_country: China:Hubei; Xiaogan

ncbi_isolation_source: abdominal cavity

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: Norway

ncbi_isolation_source: Culture

ncbi_submitter: Orebro University Hospital


ncbi_country: China

ncbi_isolation_source: fly from chicken farm

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: Colombia

ncbi_isolation_source: Salt mine

ncbi_organism_name: Salifodinibacter halophilus

ncbi_strain_identifiers: USBA 960

ncbi_submitter: Universidad de Los Andes


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus equicursoris;x__Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162


ncbi_organism_name: Mesorhizobium sp. C420B

ncbi_submitter: Washington State University


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE