ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_level: Scaffold

ncbi_country: Pakistan

ncbi_isolation_source: Coriender and Cumin mix

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


gtdb_representative: t

ncbi_country: Canada: Nunavut

ncbi_isolation_source: Arctic cryosol methane SIP

ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: Rumen uncultured genome RUG10468

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Marvinbryantia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Complete Genome

ncbi_country: Poland: Silesia; next to Bytom city

ncbi_isolation_source: Surface sterilized roots of Sida hermaphrodita

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Helmholtz Zentrum Muenchen GmbH


ncbi_country: Germany: Hattingen waste water treatment plant

ncbi_isolation_source: anammox biofilm in wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_organism_name: Salmonella sp. SA17155

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M048S1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_organism_name: Acrocarpospora pleiomorpha

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_assembly_name: MEPMAR

ncbi_isolate: MEPMAR

ncbi_organism_name: Candidatus Mikella endobia

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: MEPMAR

ncbi_submitter: UNIVERSITY OF SOUTH BOHEMIA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Mikella;s__Candidatus Mikella endobia


ncbi_country: France: Roscoff

ncbi_isolation_source: seawater

ncbi_organism_name: Arcobacter roscoffensis

ncbi_submitter: Darwin Bioprospecting Excellence SL


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0408

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_assembly_level: Chromosome

ncbi_country: Spain: Mallorca

ncbi_isolation_source: karstic caves

ncbi_organism_name: Pseudomonas lalucatii

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:646

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:646


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: National Academy of Agrarian Sciences of Ukraine


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: PJF

ncbi_submitter: Enze Hospital


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Dysosmobacter welbionis


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Acinetobacter proteolyticus

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4862

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4862


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NIH


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Aquifex aeolicus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1058283

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Austria: Vienna

ncbi_isolation_source: rectal

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: nature environment

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Zhongkai University of Agriculture and Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy

ncbi_isolation_source: bovine meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Brevundimonas sp. Root608

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: McGill University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Buchnera aphidicola (Nippolachnus piri)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Thalassovita sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: SPRUCE 59

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: SPRUCE 59

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Undibacterium sp.

ncbi_submitter: EPFL


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: University of Chicago


ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonas sp. UBA6719

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_submitter: Aalborg University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPLOWO2_02_FULL_48_8


ncbi_organism_name: Desulfuromonadales bacterium


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China

ncbi_isolation_source: thermophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Germany: Sylt

ncbi_isolation_source: hemolymph

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Liaoning; Yingkou

ncbi_organism_name: Bacillus albus

ncbi_strain_identifiers: DLOU-Yingkou

ncbi_submitter: Dalian Ocean University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_strain_identifiers: ena-yuan-GCF_000736655.1;feltiae France

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Xenorhabdus;s__Xenorhabdus bovienii;x__Xenorhabdus bovienii str. feltiae France


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Novipirellula rosea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Cellulomonas sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Washington


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas rhizophila

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Thailand

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Russia: Petrozavodsk

ncbi_isolation_source: fresh carrot

ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: 1725 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia jiangsuensis

ncbi_submitter: Laboratory of Biocatalysis and Synthetic Biotechnology


ncbi_country: India: Hiryur; Chitrdurg; Karnataka

ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: ICAR-National Research Centre on Pomegranate

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Oscillibacter sp. MSJ-31

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella sp. UBA6373

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: Rumen uncultured genome RUG10861

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tongji University


ncbi_isolate: metabat2_6737_HOM_CTRL_hicanu.200 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_hicanu.200 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Shinella sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: AOP39_D1_surf _bin _9

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP39_D1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-19

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-19


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Guatemala

ncbi_organism_name: Escherichia coli DEC6C

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Dongguan

ncbi_organism_name: Salmonella sp. 15E126

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Thermus sp. LT1-2-5

ncbi_submitter: Universitas Indonesia, Department of Biology, Faculty of Mathematics and Natural Sciences


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Georgia


ncbi_isolation_source: isolated from soil from the Genoscope premises

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Genoscope CEA


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Argentina

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Ghana: Western region

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: Bolivia: Santa Cruz de la Sierra

ncbi_isolation_source: hospital

ncbi_submitter: Centro de Ciencias Genomicas - UNAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: marine

ncbi_organism_name: Thalassospira sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: South Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Lachnospira eligens


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillus licheniformis


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Agromyces sp. NPDC058484

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECO 087

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: LK_344 Iso 6

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG10650

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Moscow

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Columbus; Ohio

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; dental plaque

ncbi_organism_name: Tannerella sp. oral taxon 808

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;x__unclassified Tannerella;s__Tannerella sp. oral taxon 808


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Corse; Alata

ncbi_isolation_source: petiole from symptomatic leaf

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRA


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Methylocella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_submitter: Kansas State University


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium TX0133a04

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Acutalibacter stercoravium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: OR

ncbi_organism_name: Rhodococcus sp. 05-2256-B3

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2256-B3


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Tyzzerella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Corynebacterium glucuronolyticum ATCC 51866

ncbi_submitter: Baylor College of Medicine

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: IA

ncbi_isolation_source: core


ncbi_isolation_source: 500th passage of C600T strain containing plasmid IncX3; without antibiotics

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: South Korea

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Colombia: Santa Marta

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Blastocatellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Klebsiella indica

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Reinekea sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Peribacillus loiseleuriae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: Streptomyces albogriseolus


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Holdemanella sp. MSK.7.32

ncbi_submitter: University of Chicago


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_country: China: Yunnan Province

ncbi_isolation_source: Solfataric soil

ncbi_organism_name: Alicyclobacillus ferrooxydans

ncbi_submitter: California Institute of Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: cow raw milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroidia bacterium UC5.1-2G11

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium UC5.1-2G11


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_country: Arctic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Micrococcus sp. KRD128

ncbi_submitter: Robert Gordon University


ncbi_country: Bangladesh

ncbi_isolation_source: gizzard materials

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Bangladesh Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_submitter: University of Queensland


ncbi_organism_name: Mobilitalea sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1417

ncbi_strain_identifiers: FDAARGOS 1417

ncbi_submitter: US Food and Drug Administration


ncbi_country: Belgium

ncbi_isolation_source: Beer

ncbi_organism_name: Acetobacter orleanensis

ncbi_submitter: Ghent University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: China: Beijing

ncbi_isolation_source: artificial municipal wastewater in bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Peking University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus cristatus ATCC 51100

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Shenzhen

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Fusobacterium mortiferum


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Taizhou

ncbi_isolation_source: secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Leclercia sp. EC_58

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC006551

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Tetragenococcus koreensis

ncbi_strain_identifiers: KCTC 3924

ncbi_submitter: Chung-Ang University


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: United States Naval Academy


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Stenotrophomonas sp.


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Sphingomonas sp. PP-CE-3G-477

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: National Center for Biotechnology Information

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_submitter: FDA/CFSAN


ncbi_country: Honduras

ncbi_isolation_source: fish farm

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee Veterinary College


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: puncture fluid

ncbi_submitter: China Agriculture University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactobacillus juensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Vidalia Region; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: Coal mine soil

ncbi_organism_name: Rhizobium sp. NIBRBAC000502774

ncbi_submitter: Genetic Resources Bank


ncbi_organism_name: Streptomyces sp. NRRL_B-2249

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Comamonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Chile

ncbi_organism_name: Amycolatopsis thermalba

ncbi_submitter: Northumbria University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Mycoplasmatales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: uncultured Boseongicola sp.


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: EMG


ncbi_isolation_source: terrestrial

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomycetales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG531

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Tanzania: Zanzibar

ncbi_isolation_source: chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: Brazil: Tucurui Power Plant Reservoir

ncbi_isolation_source: 5 liters of water from the Tucurui Power Plant Reservoir; point M5 collected 50cm beneath the lake surface; then filtered by negative pressure for posterior culture in BG-11 medium

ncbi_organism_name: Rhodobacter sp. CACIA14H1

ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_isolation_source: ballast tank

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Shandong university


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Leptospira weilii str. UI 14631

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira weilii;x__Leptospira weilii str. UI 14631


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_strain_identifiers: VIB 93

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Sichuan University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand: Pattani

ncbi_isolation_source: milk

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: enrichment on artificial chitin hydrogel particle

ncbi_organism_name: Epibacterium ulvae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Spain

ncbi_isolation_source: Articular liquid

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: Federal University of Bahia


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Oak Ridge National Lab


ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: Atlanta; Georgia

ncbi_isolation_source: Femoral bone

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UTSW Atlanta 01

ncbi_submitter: University of Texas Southwestern Medical Center


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus caldus

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_strain_identifiers: CVUAS 4988

ncbi_submitter: Chemisches und Veterinaeruntersuchungsamt Stuttgart


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Massachusetts; Boston

ncbi_submitter: Broad Institute


ncbi_submitter: national health research institutes


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Streptococcus mutans PKUSS-HG01

ncbi_country: China: Beijing

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans PKUSS-HG01

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce

ncbi_organism_name: Brucella anthropi

ncbi_submitter: University of Wyoming


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_isolation_source: culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Chr. Hansen A/S


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: chicken meat from supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: One Health Poultry Hub


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Microbacterium sp. ABRD28

ncbi_submitter: Nakdonggang National Institute of Biological Resource


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1166


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ekotedo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan: New Taipei

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Zhejiang University School of Medicine


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5916

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: France: Lille

ncbi_isolation_source: trachea


ncbi_country: France: Amiens

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: AAFC


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: nankai university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Tibet; Daggyai hot spring

ncbi_isolation_source: hot spring sediment

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Anoxymicrobiaceae;g__Candidatus Geohydrothermomicrobium;s__Candidatus Geohydrothermomicrobium daggyaiense

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Anoxymicrobiaceae;g__Candidatus Geohydrothermomicrobium;s__Candidatus Geohydrothermomicrobium daggyaiense


ncbi_organism_name: Methylobacillus sp. Pita2

ncbi_submitter: IBPM RAS


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tenacibaculum sp. MEBiC07804

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_organism_name: Salmonella sp. s54550

ncbi_submitter: Zhejiang university


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_strain_identifiers: GCULR

ncbi_submitter: Gachon University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Deinococcus aquaticus

ncbi_submitter: University of Concepcion


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nuvita Ilac


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Phyllobacterium sp. NPDC097923

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad de Guadalajara


ncbi_assembly_name: consensus

ncbi_isolate: consensus

ncbi_organism_name: Ligilactobacillus murinus

ncbi_strain_identifiers: consensus

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Pontiellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacillales bacterium UBA1188

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Muenster


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5236


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Cellvibrio sp.


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shantou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Pseudogracilibacillus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Poland: Olsztyn

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3847

ncbi_submitter: University of Queensland


ncbi_organism_name: Vibrio sp. Vb0718

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: France

ncbi_isolation_source: cheese (Emmental; raw milk)

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 1501

ncbi_submitter: Brigham Young University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China: Sichuang

ncbi_isolation_source: frozen food

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Belgium: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Southampton


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG14251

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Virgibacillus alimentarius

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli O111:NM str. K6897

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6897


ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: Bicetre hospital


ncbi_organism_name: bacterium


ncbi_organism_name: Bacillus sp. YIM B13570

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13570


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: SOAPdenovo v1.06

ncbi_country: South Korea: Kunsan

ncbi_isolation_source: saltern

ncbi_organism_name: Nocardiopsis kunsanensis DSM 44524

ncbi_submitter: Yunnan Institute of Microbiology, Yunnan University


ncbi_isolation_source: Human nasopharynx

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UANTW


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Germany

ncbi_isolation_source: trachea; air sacks

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_country: USA:Little Rock

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Spain: Andalucia

ncbi_organism_name: Pseudomonas sp. PICF141

ncbi_submitter: Instituto de Agricultura Sostenible


ncbi_country: China: HeNan

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-150

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: whole fly

ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: EF

ncbi_submitter: University of Alberta


ncbi_organism_name: Aeromonas sp. SE22

ncbi_submitter: University of Wyoming


ncbi_isolate: AOP5_B2_surf _bin _1

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP5_B2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_isolation_source: sputum

ncbi_submitter: SC


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA672

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA672


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Ocean University of China


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: Turicibacter sanguinis


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Arthrobacter sp. MYb221

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Bifidobacterium dentium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: Rumen uncultured genome RUG14234

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1951

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-37

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_strain_identifiers: new MAG-37

ncbi_submitter: Micoorganism


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC065D07

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: SMRTlink v11.1.0

ncbi_organism_name: Trinickia caryophylli

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Catenisphaera adipataccumulans

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Promicromonospora thailandica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: Hospital Sirio-Libanes


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Singapore Food Agency


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: Streptomyces kaempferi


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Neisseria sp. P0003.S004

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus praedii

ncbi_submitter: Aarhus University


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Mageeibacillus sp. UBA5747

ncbi_submitter: University of Queensland


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Thermotogales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Atlantic Ocean: United States northeast coast

ncbi_isolation_source: Marine sediment [ENVO:03000033]

ncbi_organism_name: Rhodobacter sp. NTK016B

ncbi_submitter: NIOZ Royal Netherlands Institute for Sea Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Mexico: Sonora; El Riito

ncbi_isolation_source: Hypersaline water

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Brevibacillus fulvus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Iran: Persian Gulf; Khark

ncbi_isolation_source: marine surface water

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Tehran


ncbi_assembly_name: Stenotrophomonas maltophilia mecca isolate

ncbi_isolate: Mecca

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: Mecca

ncbi_submitter: KAUST


ncbi_country: China: Shenyang; Liaoning

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Northwest A&F University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_country: Estonia

ncbi_isolation_source: manure

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: GNS Science


ncbi_country: China: Chongqing

ncbi_isolation_source: Abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_country: Brazil

ncbi_isolation_source: cowpea nodules

ncbi_organism_name: Bradyrhizobium manausense

ncbi_submitter: Embrapa Agrobiologia


ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA1021


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MT; Missoula; slopes of Mt Sentinel

ncbi_isolate: SMOKAORE

ncbi_isolation_source: bacteriome

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMOKAORE

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_isolation_source: Colon

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Germany: Sylt

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli O157:H7 str. EC4113

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EC4113


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_organism_name: Pseudomonas sp. GP01-A4

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: UC Davis


ncbi_country: Israel

ncbi_isolation_source: udder acute mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: New York

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom: Norfolk (trap soil)

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: The James Hutton Institute


ncbi_country: Mongolia

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 904

ncbi_submitter: Brigham Young University


ncbi_organism_name: Aurantimicrobium sp.

ncbi_submitter: China Agricultural University


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_country: USA

ncbi_organism_name: Sideroxydans lithotrophicus ES-1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Streptosporangium jomthongense

ncbi_strain_identifiers: TBRC 7912

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Jiaxing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_country: China: Tengchong; Yunnan; QiaoQuan

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus KINB6023

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: WuHan

ncbi_isolation_source: retail market

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: farm environment

ncbi_submitter: University of Bern


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Salinisphaera sp. T31B1

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Microcoleus sp. FACHB-45

ncbi_submitter: South China Normal University


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: United Kingdom

ncbi_submitter: SC


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Northwest A&F University

ncbi_isolation_source: mucous membrane from the respiratory tract of a pleuropneumonia goat

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri;x__Mycoplasma mycoides subsp. capri LC;x__Mycoplasma mycoides subsp. capri str. G1201


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dactylosporangium sp. McL0621

ncbi_submitter: New Zealand Forest Research Institute


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia sp. WS568

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC056069

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rehaibacterium terrae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Fenollaria sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Fenollaria;x__environmental samples;s__uncultured Fenollaria sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Bacillus sp. FSL W8-1143

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-1143


ncbi_country: USA: California

ncbi_isolation_source: VAFB Launch Pad

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Liberty Biosecurity


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan: Kochi Prefecture

ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces sp. G-5

ncbi_submitter: Kochi University


ncbi_country: Kenya

ncbi_isolation_source: MMUST Wastewater treatment plant

ncbi_submitter: MMUST biological


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Southern California


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Pacific Ocean: Mariana trench

ncbi_isolate: LMO Bin60

ncbi_isolation_source: marine sediment; cultured under 152Mpa pressure

ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: LMO Bin60

ncbi_submitter: Shanghai Jiaotong UNI


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: University hospital Lubeck


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Rothia dentocariosa


ncbi_isolation_source: blood of laboratory mouse

ncbi_organism_name: Borrelia hermsii YBT

ncbi_strain_identifiers: YBT

ncbi_submitter: Integrated Genomics


ncbi_organism_name: Ruminococcus gauvreauii


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-O15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Hawaii

ncbi_isolation_source: Heads

ncbi_organism_name: Delftia sp. S67

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Halomonas sp. BC1

ncbi_submitter: Procter & Gamble Company


ncbi_isolation_source: Costularia arundinacea roots

ncbi_organism_name: Paraburkholderia ultramafica

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium