ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Kapaibacteriota bacterium

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;x__unclassified Candidatus Kapaibacteriota;s__Candidatus Kapaibacteriota bacterium


ncbi_assembly_level: Contig

ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Companilactobacillus paralimentarius

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


gtdb_representative: t

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Histophilus somni

ncbi_submitter: Iowa State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1474

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. KL15030

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA


ncbi_country: China: Guangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10104

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: EMG


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Nofima


gtdb_type_species_of_genus: t

ncbi_isolation_source: spoiled salad dressing

ncbi_organism_name: Fructilactobacillus fructivorans

ncbi_submitter: Shanghai Majorbio

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: CA

ncbi_isolation_source: mushroom

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Italy: Empoli

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: Cf-Emp

ncbi_submitter: University of Genoa


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: surface seawater

ncbi_organism_name: Marinobacter sediminum

ncbi_submitter: Ocean university of China


ncbi_country: Hong Kong

ncbi_isolation_source: blood from hospitalized patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Beijing

ncbi_organism_name: Bacteroides propionicigenes

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Academy of Sciences

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_assembly_name: Willow Endophyte RIT293

ncbi_country: USA: New York; Geneva

ncbi_isolation_source: Willow (Salix sp.)

ncbi_organism_name: Microbacterium oleivorans

ncbi_submitter: Monash University Malaysia


ncbi_assembly_name: IMG-taxon 2671180037 annotated assembly

ncbi_organism_name: Pseudomonas kuykendallii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Collinsella sp. CLA-ER-H10

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: wound

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: Toho University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-162

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Staphylococcus sp. FR041

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: USDA


ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Dust collector

ncbi_organism_name: Paracoccus suum

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen


ncbi_country: China: Liaoning province

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Durham; NC

ncbi_isolation_source: catheterized bladder urine

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: South Korea: Chuncheon-si

ncbi_isolation_source: feces

ncbi_organism_name: Arthrobacter sp. YD2

ncbi_submitter: Dongguk University


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_submitter: Penn State


ncbi_submitter: FDA/CDC


ncbi_assembly_name: IMG-taxon 2582581267 annotated assembly

ncbi_organism_name: Caloramator proteoclasticus DSM 10124

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10990

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Desulfurivibrio sp. D14AmB

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shinshu university hospital


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Streptomyces sp. NBC_01563

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella sp. NW990

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: KAUST


ncbi_isolation_source: milk

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_organism_name: Hahellaceae bacterium


ncbi_country: Pakistan: Rawalpindi

ncbi_isolation_source: soft tissue

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: university of cambridge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: NY

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Hiroshima University


ncbi_country: Austria

ncbi_isolation_source: Ready-to-eat food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Boku University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_submitter: University of Wyoming


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Campylobacter jejuni CVM N9016 v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: CVM N9016

ncbi_submitter: FDA


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus GGMC6024

ncbi_submitter: Broad Institute


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: Masaryk University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Psychrobacillus sp. FSL W7-1457

ncbi_submitter: Penn State


ncbi_country: USA: Texas

ncbi_isolation_source: Deep subsurface

ncbi_organism_name: Bacillus cereus

ncbi_submitter: MIT


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Streptomyces virginiae

ncbi_strain_identifiers: NRRL B-1447

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Limosilactobacillus pontis

ncbi_strain_identifiers: LSUN-Sui

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Germany: Munich

ncbi_isolation_source: food

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin76

ncbi_isolation_source: soil

ncbi_organism_name: bacterium

ncbi_strain_identifiers: MDV bin76

ncbi_submitter: Monash University


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Gorchuk; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Chicago


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Ocean University


ncbi_assembly_name: freshwater MAG --- Erken-D3_bin-0783

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig fecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Microbacterium maritypicum

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp. TMED155

ncbi_submitter: University of Southern California


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Vancouver

ncbi_isolation_source: feces

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_submitter: University of Milan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA4183

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4183


ncbi_country: USA

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium difficile

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S8

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: University of Calgary


ncbi_country: South Korea: Daegu

ncbi_isolation_source: freshwater sediment of Sincheon River

ncbi_organism_name: Cellvibrio sp. KY-GH-1

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Morocco

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Taiwan: Guandu

ncbi_isolation_source: estuary sediment

ncbi_organism_name: Thauera sp. GDN1

ncbi_submitter: Soochow University


ncbi_assembly_level: Chromosome

ncbi_assembly_name: IMG-taxon 2595698254 annotated assembly

ncbi_organism_name: Thermoanaerobacterium sp. RBIITD

ncbi_strain_identifiers: RBIITD

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O156:H25;x__Escherichia coli O156:H25 str. 2011C-3602


ncbi_organism_name: Pseudochrobactrum asaccharolyticum


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolate: SPRUCE 545

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: SPRUCE 545

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Shewanella vesiculosa


ncbi_organism_name: Solibacillus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Polynucleobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Tengchong; Gumingquan hot spring

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Schleiferilactobacillus perolens

ncbi_submitter: Teagasc


ncbi_organism_name: Streptomyces sp. WAC01325

ncbi_submitter: McMaster University


ncbi_organism_name: Alistipes ihumii


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium terpenotabidum Y-11

ncbi_submitter: Bielefeld University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Pakistan

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Quaid-i-Azam University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium CG08_land_8_20_14_0_20_43_14


ncbi_isolation_source: caecum

ncbi_organism_name: Erysipelatoclostridium sp. An15

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Curtobacterium sp. C2H10

ncbi_submitter: The Ohio State University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: EMG


ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UR12SP37 Laboratoire de Microbiologie Sahloul


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: blood

ncbi_submitter: Charles University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Guangdong

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12549

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas sp. MYb60

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Helicobacter pylori


ncbi_country: Portugal

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: WHRI 6149

ncbi_submitter: University of Exeter


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG13678

ncbi_organism_name: Fibrobacter succinogenes


ncbi_country: Japan:Kanagawa; Yokohama

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sphaerotilus microaerophilus

ncbi_submitter: Yokohama National University


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_isolation_source: environmental


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Pseudolactococcus raffinolactis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Russia: North Osetia; Caucasus

ncbi_isolation_source: nodules

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2585428066 annotated assembly

ncbi_organism_name: Anaerosphaera aminiphila DSM 21120

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus iniae KCTC 11634BP

ncbi_strain_identifiers: KCTC 11634BP

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Hungary: Zempln Mountain

ncbi_isolation_source: colon

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Hungarian University of Agriculture and Life Sciences


ncbi_country: India

ncbi_isolation_source: Isolated as endophyte from roots of field grown Papaver somniferum plants of cv. Sampada

ncbi_organism_name: Microbacterium sp. SMR1

ncbi_submitter: CSIR-Central Institute of Medicinal and Aromatic Plants


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: North Carolina; Durham

ncbi_organism_name: Virgibacillus sp. SK37

ncbi_submitter: BGI


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_country: USA: Brigham and Women s Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa BWH033

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_isolation_source: sediment

ncbi_organism_name: Anaerosacchariphilus polymeriproducens

ncbi_submitter: Korea Institute of Ocean Science & Technology (KIOST)


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: EMG


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Netherlands

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae 2061376

ncbi_submitter: Academic Medical Center Amsterdam, The Netherlands


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Germany: Hamburg

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA:New York City

ncbi_isolation_source: metal


ncbi_organism_name: Candidatus Jacksonbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;x__unclassified Candidatus Jacksonbacteria;s__Candidatus Jacksonbacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Rhodococcus erythropolis


ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Turku


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Canada: Guelph

ncbi_isolation_source: Fresh seeds

ncbi_organism_name: Bacillus sp. EKM213B

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM213B


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: EMG


ncbi_isolation_source: saliva from oral cavity

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Northwest University for Nationalities


ncbi_isolation_source: human gut

ncbi_organism_name: Escherichia albertii


ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudorhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: CA

ncbi_organism_name: Enterococcus faecalis EnGen0298

ncbi_submitter: Broad Institute


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 0-3 cm

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA3527

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA3527


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre pasteur du Cameroun


ncbi_organism_name: Runella limosa DSM 17973

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Runella;s__Runella limosa;x__Runella limosa DSM 17973


ncbi_country: Israel

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Russia: Vladimir region

ncbi_isolation_source: Salad  Nezhnost  with dressing

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus sp. BS

ncbi_strain_identifiers: BS

ncbi_submitter: Integrative Taxonomy and Microbial Ecology Research Group, IISER Kolkata

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BS


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Oxford


ncbi_organism_name: Streptomyces sp. NPDC088760

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Amycolatopsis sp. NPDC006131


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: New York City

ncbi_isolation_source: urine unspecified

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Gluconacetobacter aggeris

ncbi_submitter: Ghent University


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Cellulomonas fimi ATCC 484

ncbi_strain_identifiers: ATCC 484

ncbi_submitter: US DOE Joint Genome Institute


ncbi_strain_identifiers: LYP

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_submitter: Cepheid


ncbi_country: Poland: Biebrza National Park buffer zone

ncbi_organism_name: Bacillus sp. BB51/4

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. BB51/4


ncbi_country: USA: New York; NY

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter ruhlandii


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: NSW

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Pseudoalteromonas sp. 43-MNA-CIBAN-0464

ncbi_submitter: University of Florence


ncbi_country: Mozambique

ncbi_isolation_source: nodule

ncbi_organism_name: Agrobacterium deltaense

ncbi_strain_identifiers: CNPSo 3391

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Rd.9

ncbi_submitter: Broad Institute


ncbi_submitter: Public Health Agency of Canada


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea sediment; site NB8

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Radboud University Njmegen


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ISMETT ST307 cl5

ncbi_submitter: ISMETT


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus aureus M1405


ncbi_assembly_name: Rumen uncultured genome RUG14694

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: algal mat

ncbi_organism_name: Planococcus rifietoensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-9276

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Curvibacter sp.

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_isolation_source: Vitis vinifera

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: Actinoplanes philippinensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Poseidonibacter lekithochrous

ncbi_submitter: University of Santiago de Compostela


ncbi_isolation_source: rat gut

ncbi_organism_name: Alphaproteobacteria bacterium UBA7083

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: Ares Genetics GmbH


ncbi_submitter: Fudan University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides xylanisolvens


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: Early seed surface sterilization rinse; including the placenta and fruit pulp tissues

ncbi_organism_name: Pantoea anthophila

ncbi_submitter: University of Guelph


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_country: USA

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: aquaculture system

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFTM


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Christiangramia flava

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Exiguobacterium artemiae

ncbi_submitter: Anhui Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium artemiae


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Oleihabitans oleiphilus

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Stramentimicrobiaceae;g__Candidatus Oleihabitans;s__Candidatus Oleihabitans oleiphilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Stramentimicrobiaceae;g__Candidatus Oleihabitans;s__Candidatus Oleihabitans oleiphilus


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-198

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_strain_identifiers: new MAG-198

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University Hospital of North Norway


ncbi_organism_name: Mitsuaria sp. CC2

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acinetobacter schindleri


ncbi_country: USA: New Orleans; LA

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Collinsella aerofaciens


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: feces from farm

ncbi_organism_name: Campylobacter coli

ncbi_submitter: One Health Poultry Hub


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Aliarcobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: soil

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Russia: Lake Khanka; Primorsky Krai

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Irkutsk Antiplague Research Institute of Siberia and Far East


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA1949


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: SJTUF 61119

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: freshwater MAG --- Umea_bin-08968

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: anammox reactor granules

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biological Research Institute "Clemente Estable"


ncbi_organism_name: Defluviitoga tunisiensis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5078

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nitrospira sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Genentech


ncbi_country: Russia: Moscow

ncbi_isolation_source: digestive system

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: SRCAMB


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaves of Phaseolus vulgaris

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9152

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA892


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Anaerolineaceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Brazil

ncbi_isolation_source: bone fragment

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Argentina

ncbi_isolation_source: alfalfa nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: National Institute of Agricultural Technology (INTA)


ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Brown University


ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: sludge

ncbi_organism_name: Sphingobacterium sp. WM

ncbi_strain_identifiers: WM

ncbi_submitter: Peking University


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudoflavonifractor sp. An184

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: black pepper power

ncbi_strain_identifiers: BGSC 4AS1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar oswaldocruzi


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: USA: IL

ncbi_isolation_source: food nursery water

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Nigeria

ncbi_isolation_source: wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Streptomyces fulvorobeus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Italy: Lombardia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacter longobardus

ncbi_submitter: University of Trento


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: University of Oxford


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: transconjugant from Escherichia coli strain HB42

ncbi_submitter: Henan Agricultural University


ncbi_country: Hong Kong

ncbi_isolation_source: Rectal Swab

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC003036

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Gabon

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium moukalabense

ncbi_submitter: National Institute of Genetics


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: Pacific Ocean

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT208_60m_813I02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Hong Kong: Kiu Tsui Chau

ncbi_organism_name: Ruegeria sp. HKCCD4315

ncbi_submitter: Chinese University of Hong Kong


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F80972

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Schleiferiaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Sweden: Kalmar

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Region Kalmar County


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Proteobacteria bacterium UBA2770

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2770


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: McGill University


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: SRCAMB


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Erythrobacter sp. EC-HK427

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: China: Shenzhen

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: BGI


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola vulgatus CL09T03C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Brevundimonas sp. BAL3

ncbi_submitter: The Gordon and Betty Moore Foundation Microbial Genome Sequencing project


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Pusan National University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Fusibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Eubacteriales Family XII. Incertae Sedis;g__Fusibacter;x__environmental samples;s__uncultured Fusibacter sp.


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Paenibacillus chitinolyticus


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_organism_name: Flagellimonas sp.


ncbi_organism_name: Salmonella sp. s54496

ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: University of Bergen


ncbi_country: Italy

ncbi_isolation_source: surgical wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Macinerneyibacteriota;c__Candidatus Mcinerneyibacteria;o__Candidatus Mcinerneyibacteriales;x__unclassified Candidatus Mcinerneyibacteriales;s__Candidatus Mcinerneyibacteriales bacterium


ncbi_submitter: Institut de Biologie Integrative et des Systemes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom

ncbi_organism_name: Diplocloster agilis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: rectum

ncbi_organism_name: Enterococcus faecalis 918

ncbi_submitter: Washington University


ncbi_isolation_source: grass

ncbi_organism_name: Xanthomonas graminis pv. graminis

ncbi_submitter: CEBITEC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. graminis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira interrogans serovar Australis

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Guangdong

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Russia: Leningrad

ncbi_isolation_source: intestine from healthy child

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: State Research Institute of Highly Pure Biopreparations


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Acidovorax sp. Root568

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Vapotherm; air channel

ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University of Michigan


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SR41-4

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: sediment

ncbi_organism_name: Cyanobacteria bacterium UBA11159

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA11159


ncbi_assembly_name: Salmonella enterica CVM N51984 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus GGMC6049

ncbi_submitter: Broad Institute


ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Downer s Grove; Illinois

ncbi_isolation_source: pond water

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Lebanon

ncbi_submitter: LAU


ncbi_country: Poland: Kalisz

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Bo Hai; Panjin

ncbi_isolation_source: marine sediments in Liaodong Bay

ncbi_organism_name: Bacillus cereus

ncbi_submitter: hao zhou


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Zhejiang

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Brevundimonas naejangsanensis


ncbi_organism_name: uncultured Negativibacillus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__environmental samples;s__uncultured Negativibacillus sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Ghent University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5265

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanxi province

ncbi_organism_name: Streptomyces sp. PKU-EA00015

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Heidelberg

ncbi_submitter: NCTR


ncbi_country: Spain

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_country: France

ncbi_isolation_source: Environment; lake water

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Caecum


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1299

ncbi_submitter: Broad Institute


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 177 (4-2876612)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 177 (4-2876612)


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Hainan

ncbi_isolation_source: sewage

ncbi_organism_name: Acinetobacter sp. YH12143

ncbi_submitter: South China Agricultural University


ncbi_country: Italy: Lecco

ncbi_isolation_source: Urethral swab

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of Bern


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_country: USA: Rapid City; SD

ncbi_organism_name: Methylosinus trichosporium OB3b

ncbi_submitter: South Dakota School of Mines and Technology


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Cambridge Bay; NU

ncbi_isolation_source: Arctic soil

ncbi_organism_name: Pedobacter hiemivivus

ncbi_submitter: Kyonggi University


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2600255289 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy: Bologna

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: India: Pune

ncbi_isolation_source: stool sample from healthy individual

ncbi_organism_name: Megasphaera sp. NM10

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Clostridia bacterium


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Neoaquamicrobium sediminum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_submitter: Ocean University of China


ncbi_organism_name: Caulobacter sp. 73W

ncbi_submitter: University of Hawaii at Manoa


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA2137

ncbi_submitter: University of Queensland


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: New York

ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Cornell University


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter sp.


ncbi_isolation_source: 79-year-old female

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Majorbio Bio-pharm Technology Co.,Ltd


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. LT2;x__Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4


ncbi_country: Greece: Thessaloniki

ncbi_isolation_source: urine

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B103;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: South Africa: Gauteng

ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institut Pasteur


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York state

ncbi_isolation_source: finished ready to eat diry food product

ncbi_organism_name: Bacillus wiedmannii


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Jangsu

ncbi_isolation_source: waste water treatment system

ncbi_organism_name: Mycobacterium sp. djl-10

ncbi_submitter: Huaiyin Normal University


ncbi_country: Pacific Ocean: Western Pacific

ncbi_isolation_source: sea water

ncbi_organism_name: Henriciella mobilis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: BGI


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Texas; Victoria

ncbi_isolation_source: abscess swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Chile: Colina; Region Metropolitana

ncbi_isolation_source: stools

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Universidad de Chile


ncbi_isolate: AOP21_A1_surf _bin _5

ncbi_organism_name: Hafnia alvei

ncbi_strain_identifiers: AOP21_A1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: South Korea: Chuncheon

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Kangwon National University


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Taiwan

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: VTEC

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA