ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: Rumen uncultured genome RUG14140

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stony Brook University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bordetella avium

ncbi_refseq_category: reference genome

ncbi_submitter: University of Turku

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_level: Scaffold

ncbi_submitter: Central Texas Vetrans Healthcare system


ncbi_country: China: Bengbu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: USA

ncbi_isolation_source: Strip loin

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli B107

ncbi_submitter: IGS


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Brown University


ncbi_country: USA: Mount Pinos; Los Padres National Forest; California

ncbi_isolation_source: termite gut

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: captive penguin in the USA

ncbi_organism_name: Mycoplasma sp. NEAQ87857

ncbi_submitter: University of Florida


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Dominican Republic

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: USA: Oregon

ncbi_isolation_source: cane gall

ncbi_organism_name: Rhizobium sp. VS19-DR121

ncbi_submitter: Oregon State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Nebraska

ncbi_isolation_source: Bacterial isolate

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Gribaldobacteria;s__bacterium (Candidatus Gribaldobacteria) CG10_big_fil_rev_8_21_14_0_10_37_21


ncbi_organism_name: Virgibacillus sp. CBA3643

ncbi_submitter: World Institute of Kimchi


ncbi_country: China: Shenzhen

ncbi_organism_name: Halomonas sp. DP1Y21-3

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: China: Shatin

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human stool

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Faecalimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces scopuliridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Fimadaptatus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimadaptatus;x__unclassified Candidatus Fimadaptatus;s__Candidatus Fimadaptatus sp.


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Streptomyces sp. NPDC056831


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: University of California Davis


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Galway


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics


ncbi_organism_name: Pseudocitrobacter sp. MW920760

ncbi_submitter: Queen's University Belfast


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: Southwest University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22798;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: stool

ncbi_submitter: Cornell University


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Physcocola equi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Physcocola;s__Candidatus Physcocola equi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Hydrogenoanaerobacterium sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Iran: Kerman

ncbi_isolation_source: Barley

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0974

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: USA: Ohio; Lake Erie; Sandusky Bay

ncbi_isolation_source: Freshwater

ncbi_organism_name: Planktothrix agardhii 1805

ncbi_submitter: Bowling Green State University


ncbi_country: China

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Ningbo

ncbi_isolation_source: effluent of sewage treatment plant

ncbi_organism_name: Bradyrhizobium sp. BL

ncbi_strain_identifiers: BL

ncbi_submitter: Institute of Urban Environment, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: WRRC-USDA-ARS


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_organism_name: Helicobacter pylori 2017

ncbi_submitter: Pathogen Biology Laboratory, University of Hyderabad


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_submitter: National Medicines Institute


ncbi_organism_name: Pseudoalteromonas sp. B129b

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: University of New Brunswick


ncbi_organism_name: Streptomyces sp. NBC_00513

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_isolation_source: host stool sample

ncbi_organism_name: Actinomyces sp. ph3

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198


ncbi_organism_name: uncultured Kingella sp.


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter sp. V4I6

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Psychrobacter sp. MES7-P7E

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Finland: south of the Aland Islands

ncbi_isolation_source: beer bottle from 1840 s shipwreck

ncbi_organism_name: Loigolactobacillus backii

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Negativibacillus massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;s__Negativibacillus massiliensis


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 8 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: South Korea: Daegu

ncbi_organism_name: Roseococcus microcysteis

ncbi_submitter: Korea University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Streptomyces sindenensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B291;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Chongqing

ncbi_isolation_source: pond sediment

ncbi_organism_name: Geobacter sulfurreducens

ncbi_strain_identifiers: PL

ncbi_submitter: Southwest University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Streptomyces sp. YIM B13508

ncbi_submitter: Yunnan University


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Dongtai

ncbi_isolation_source: Soil

ncbi_organism_name: Comamonas sp. 7D-2

ncbi_submitter: Nanjing agricultural university


ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Germany: Braunschweig

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus anginosus;sb__Streptococcus anginosus subsp. anginosus


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Huizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Cysteiniphilum marinum

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Yale University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Olsenella sp. Marseille-P4559

ncbi_submitter: URMITE


ncbi_organism_name: Blautia hansenii DSM 20583

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia hansenii;x__Blautia hansenii DSM 20583


ncbi_country: USA: Lake; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Butyricicoccus sp. OM04-18BH

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-0275

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: South Korea

ncbi_isolation_source: gut of Batillaria multiformis

ncbi_organism_name: Polaribacter batillariae

ncbi_submitter: Kyung Hee university


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: Dental Plaque

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Malaya


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mediterranea sp.


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Stenotrophomonas sp. 9

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Bridger Bay in Great Salt Lake; Utah

ncbi_isolation_source: Microbial Mat

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Spain

ncbi_isolation_source: olive fermentation

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: CIRM-BIA 2168

ncbi_submitter: Brigham Young University


ncbi_organism_name: Sulfitobacter sp. 1A05707

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Chloroflexaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Lugo

ncbi_isolation_source: feces

ncbi_submitter: Universidad de Chile


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: South Africa: Western Cape Province

ncbi_organism_name: Paraburkholderia sp. UCT2

ncbi_submitter: University of Pretoria


ncbi_country: China:Xinjiang Province

ncbi_isolation_source: rhizosphere of cotton

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hainan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii TG2013

ncbi_submitter: Translational Genomics Research Institute


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Yovokome;x__Salmonella enterica subsp. enterica serovar Yovokome str. S-1850


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: United Kingdom: County Durham; Hamsterly Forest

ncbi_organism_name: Streptacidiphilus albus JL83

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas umsongensis

ncbi_strain_identifiers: GS

ncbi_submitter: Imperial College London


ncbi_country: Pacific Ocean

ncbi_isolation_source: North Pacific Ocean

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: University of Sao Paulo


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Xenorhabdus beddingii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Australia: South Queensland

ncbi_isolation_source: water sample collected from a coal seam gas collection system

ncbi_organism_name: Anoxybacillus sp. P3H1B

ncbi_submitter: Griffith University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Hungary: Halimba

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Seqomics Ltd.


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut tissue

ncbi_organism_name: Snodgrassella sp. ESL0304

ncbi_submitter: University of Lausanne


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_country: Mexico: Jalisco

ncbi_submitter: Universidad de Sonora


ncbi_country: China: Zhejiang

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Huashan Hospital


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Thermosynechococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Silvimonas iriomotensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UANTW


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2747

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG13512

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster clostridioformis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Parachristensenella avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Parachristensenella;s__Candidatus Parachristensenella avicola


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Neisseria sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Candidatus Ilumatobacter isfjordensis

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_submitter: FDA


ncbi_organism_name: Veillonella infantium

ncbi_submitter: EMG


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Rhone-Alpes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Streptomyces sp. NPDC057413

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus MRSN 8611

ncbi_strain_identifiers: MRSN 8611


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: Rumen uncultured genome RUG022

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Washington DC

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_assembly_name: CLC Genomics Workbench

ncbi_country: Oman: Muscat

ncbi_isolation_source: roots

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sultan Qaboos University


ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sphingomonas sp. NPDC049708


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Stenotrophomonas sp. NPDC077421

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Massiliimalia sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Christian Medical College


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Pacific Ocean:Bering Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Third Institute of Oceanography, Ministry of natural resources


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Bombo Military Hospital

ncbi_submitter: Makerere University


ncbi_country: China: Guangzhou

ncbi_isolation_source: bile

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China University of Technology


ncbi_country: Canada: Ontario

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Haliscomenobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: University of Calgary


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Radboud University


ncbi_country: China: Beihai

ncbi_organism_name: Aestuariibaculum sp. YM273

ncbi_submitter: Fourth Institute of Oceanography, Ministry of natural resources


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: ballast tank

ncbi_organism_name: Thiogranum sp.

ncbi_submitter: Shandong university


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Weissella kandleri

ncbi_submitter: Sichuan Normal University


ncbi_country: China: Kunming

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: Yale University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Chiayiivirga sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10625

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Chile: Valdivia

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EIEC EI-34

ncbi_submitter: Centro de Estudios Cientificos


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ares Genetics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_submitter: Shandong Provincial Center for Disease Control and Prevention


ncbi_country: China: Binzhou

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas caeni

ncbi_submitter: Jiangxi Normal University


ncbi_isolation_source: clinical

ncbi_submitter: Food and Drug and Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean

ncbi_isolation_source: deep sea water

ncbi_organism_name: Roseovarius indicus

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: uncultured Weeksellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: University of Tennessee


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis EnGen0354

ncbi_submitter: Broad Institute


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_submitter: ANSES


ncbi_assembly_name: IMG-taxon 2681812865 annotated assembly

ncbi_organism_name: Edaphobacillus lindanitolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Indian Ocean: Southern

ncbi_isolation_source: Deep-sea water

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_strain_identifiers: mcr mut 1

ncbi_submitter: Paris Saclay


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces noursei

ncbi_submitter: Shengyang Pharmaceutical University


ncbi_organism_name: Burkholderia thailandensis 2002721723

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Rhodococcus aetherivorans

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Hydrogenobaculum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Sedimentibacter sp. LTW-03

ncbi_submitter: Sanming University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp. LTW-03


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Massilistercora timonensis


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin46

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: LAG bin46

ncbi_submitter: Monash University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Icerya purchasi


ncbi_assembly_name: Rumen uncultured genome RUG10293

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1467

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriales bacterium UBA3390

ncbi_submitter: University of Queensland


ncbi_isolation_source: rat gut

ncbi_organism_name: Eubacterium sp. UBA3326

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. UBA3326


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D5_bin-1135

ncbi_submitter: BILS


ncbi_country: China

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2630969012 annotated assembly

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Anthropogastromicrobium aceti

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. SS15

ncbi_submitter: Guilin University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SS15


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: University of Chicago


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy

ncbi_isolation_source: feces (Sus scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: University of Carthage Faculty of Sciences of Bizerte: Universite de Carthage Faculte des Sciences d


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolate: metabat2_coassembly_bwa.63 MAG

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.63 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Australia: Western Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptomyces sp. NPDC001717

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Colorado State University


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_country: China: Hangzhou

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade whole tissue extract

ncbi_organism_name: Lacinutrix sp.

ncbi_submitter: University of Washington-Seattle


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: South Korea: Deajeon

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: AtoGen Co., Ltd.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL092PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Leptolyngbyales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_assembly_name: Rumen uncultured genome RUG14382

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Croceitalea sp. MTPC5

ncbi_submitter: The University of Tokyo, Atmosphere and Ocean Research Institute


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Fayetteville; Arkansas

ncbi_isolation_source: sludge from a nitrification basin of a wastewater treatment plant grown in increasingly acidic conditions in an aerobic bioreactor

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: USDA


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineales bacterium UBA6128

ncbi_submitter: University of Queensland


ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 2011C-3493


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Oceanospirillales;f__Halomonadaceae;g__Litchfieldella;s__Litchfieldella anticariensis;x__Litchfieldella anticariensis FP35 = DSM 16096


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas oryzihabitans


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R640;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces


ncbi_assembly_name: Rumen uncultured genome RUG10916

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Turicibacter sanguinis


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: EMG


ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Pseudomonas aeruginosa PA14

ncbi_submitter: Technical university of Denmark


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Paenibacillus sp. FSL R10-2788

ncbi_submitter: Penn State


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13632

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Nepal

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 str. Nep-21106

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. Nep-21106


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: Ground Water

ncbi_organism_name: Sphingobium sp. GW456-12-10-14-TSB1

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_assembly_name: Rumen uncultured genome RUG774

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Ewingella sp. S1.OA.A_B6

ncbi_submitter: AIT Austrian Institute of Technology


ncbi_organism_name: Methylobacterium sp. NPDC080182

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_assembly_name: Rumen uncultured genome RUG11617

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Ireland

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: University College Cork


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Butyrivibrio fibrisolvens YRB2005

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bartonella vinsonii subsp. vinsonii

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_country: China: Meizhou City; Guangdong Province

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium arachidis

ncbi_submitter: School of Life Sciences,South China Normal University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human skin

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: South Korea: Seoul

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Fictibacillus sp. b24

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: California; Middletown

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus sp. AF31-8BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Goat raw milk Plardon

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-694

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0450


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan: Tokachi area; Obihiro

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Laboratory of Food microbiology and Immunology, Obihiro University of Agri. & Vet. Medicine


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium celericrescens

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Butantan


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Parabeggiatoa sp. nov. 1

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Candidatus Parabeggiatoa;x__unclassified Candidatus Parabeggiatoa;s__Candidatus Parabeggiatoa sp. nov. 1


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M090S1


ncbi_country: Atlantic Ocean: western flank of Mid-Atlantic Ridge (North Pond)

ncbi_isolation_source: marine sediment push core 14

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: Dauphin Island Sea Lab


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Kazakhstan: Mugadgary region

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ICBFM SB RAS


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Chicago


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: IRRI


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Francisella tularensis subsp. mediasiatica

ncbi_submitter: SRCAMB


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: LEIDEN UNIVERSITY MEDICAL CENTER


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-J03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Taiwan: Taian hot springs; Miaoli

ncbi_organism_name: Thermosynechococcus sp. B1

ncbi_submitter: Academia Sinica


ncbi_country: Peru: Cajamarca

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Prevotella equi

ncbi_submitter: Quadram Institute


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodococcus sp. IEGM 1414

ncbi_strain_identifiers: IEGM 1414

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1414


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Streptomyces sp. SudanB148_2056

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Streptomyces sp. NPDC088747

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southampton


ncbi_submitter: University of Wyoming


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Monash University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Cohnella faecalis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: New South Wales

ncbi_organism_name: Salmonella sp. SG135

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Mexico: Loltun

ncbi_isolation_source: Cenote water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces sp. NBC_01483

ncbi_submitter: Technical University of Denmark


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Oenococcus oeni AWRIB429

ncbi_submitter: The Australian Wine Research Institute (AWRI)


ncbi_country: Chile: Coquimbo

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Universidad Catolica del Norte


ncbi_country: India

ncbi_organism_name: Xanthomonas axonopodis pv. bauhiniae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.5;x__Xanthomonas axonopodis pv. bauhiniae


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: National Health Research Institutes


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Tomato tissue

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CIAD AC


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_53_10


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. XY511

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Germany: Darmstadt

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Bristol


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Case Western Reserve University School of Medicine


ncbi_country: China:Nagqu city; Tibet autonomous region

ncbi_organism_name: Salinibacterium sp. dk5596

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clostridium sp. CAG:138


ncbi_country: Sudan

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL WC-3924

ncbi_submitter: University of Illinois


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: South Australia

ncbi_isolation_source: bile

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_organism_name: Enterocloster bolteae 90B3

ncbi_submitter: Broad Institute


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira santarosai serovar Grippotyphosa

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_organism_name: Pseudomonas sp. CCC3.2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium esperanzae

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_organism_name: Variovorax sp. EBFNA2

ncbi_submitter: University of California, Los Angeles


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Germany: Experimental Botanical Garden Goettingen

ncbi_isolation_source: compost soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangxi

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Washington


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Avian

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_495N4

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acinetobacter johnsonii


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Zaozhuang

ncbi_isolation_source: Coal mine

ncbi_organism_name: Exiguobacterium sp. s91

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s91


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Rhone-Alpes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Netherlands

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: RIVM


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Paracidovorax oryzae

ncbi_submitter: Guangxi University


ncbi_country: Pacific Ocean

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT208_60m_813L03


ncbi_country: USA: North Carolina

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium shofinae

ncbi_submitter: College of Biological Sciences


ncbi_country: Poland

ncbi_submitter: Cross - sectoral framework for quality Assurance Resouces for countries in the European Union- CARE - National Veterinary Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Rhodoglobus sp. NPDC076762

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABKWU

ncbi_submitter: NHGRI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: BGI Research