ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Italy: San Giovanni Rotondo

ncbi_genome_representation: full

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_assembly_level: Scaffold

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: Portugal: Amadora-Sintra

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: New Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Texas Tech University


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Burkholderia semiarida

ncbi_submitter: Instituto Politecnico Nacional


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces galilaeus

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Xiamen University


ncbi_submitter: University of verona


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: USDA-ARS 2141

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Agrobacterium radiobacter

ncbi_submitter: Yantai University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Proteobacteria bacterium UBA1148

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA1148


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Dialister sp.


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Bordetella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Cellbiotech


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: USDA-ARS


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Atopobiaceae bacterium UBA7016


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Italy

ncbi_isolation_source: duedonoscope instrument

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: China: Jinhua

ncbi_organism_name: Campylobacter sp. JH29

ncbi_submitter: Jinhua Central Hospital


ncbi_organism_name: Streptomyces sp. PanSC19

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Kingella denitrificans

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: indoor dust from athletic facility

ncbi_organism_name: Pseudomonas japonica

ncbi_submitter: Northwestern University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Intestinibacter bartlettii


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_country: China: Yangzhou City; Jiangsu Province

ncbi_submitter: SCAU


ncbi_organism_name: Mesorhizobium sp. M0678

ncbi_submitter: Washington State University


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1141

ncbi_submitter: Broad Institute


ncbi_country: Spain: Aracena; Gruta de las Maravillas

ncbi_isolation_source: from a biofilm forming a white-coloured colonization on the wall of a cave

ncbi_organism_name: Paenibacillus sp. 1011MAR3C5

ncbi_submitter: IRNAS-CSIC


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_name: Draft SP7-LAU Genome

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes SP7-LAU

ncbi_submitter: Lebanese American University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


gtdb_type_species_of_genus: t

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: University of Southampton


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 93-1

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_country: Czech Republic

ncbi_organism_name: Gallibacterium genomosp. 1

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Acutalibacteraceae bacterium AM04S-15

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: vaginal swab

ncbi_submitter: Loyola University Chicago


ncbi_country: Belgium

ncbi_isolation_source: Beer

ncbi_organism_name: Gluconobacter cerevisiae

ncbi_refseq_category: reference genome

ncbi_submitter: Ghent University


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Canada: southern Alberta feedlot

ncbi_isolation_source: feeder lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_country: China: Dafeng


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: ETH Zurich


ncbi_country: Montenegro

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: University of Exeter


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Taiwan: Tungluo; Miaoli

ncbi_organism_name: Pectobacterium sp. F1-1

ncbi_submitter: Academia Sinica


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: EMG


ncbi_isolation_source: Inner tissues of halophyte Limonium sinense (Girard) Kuntze

ncbi_organism_name: Glutamicibacter halophytocola

ncbi_strain_identifiers: KLBMP 5180

ncbi_submitter: Jiangsu Normal University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Segatella hominis


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. NPDC092370

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Gallionella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. VTCC 41912

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology


ncbi_organism_name: Ulvibacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Francisella sp.


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Astrakhan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Anhui

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B15(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solibacillus sp. FSL H8-0523

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL H8-0523


ncbi_assembly_name: Rumen uncultured genome RUG14506

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Scybalousia scybalohippi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Scybalousia;s__Candidatus Scybalousia scybalohippi


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T16669

ncbi_submitter: Broad Institute


ncbi_country: China: Xinjiang Province; Aiding Lake

ncbi_organism_name: Prauserella flava

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Acetothermia bacterium UBA3564

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Acetothermia bacterium UBA3564


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_country: China: Beihai

ncbi_isolation_source: Anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangxi Zhuang Autonomous Region Center for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Eisenbergiella pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_country: China: Hebei

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Fujian

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Veillonella parvula

ncbi_submitter: EMG


ncbi_organism_name: uncultured Methylobacterium sp.


ncbi_organism_name: uncultured Dysosmobacter sp.


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Williamsport

ncbi_isolation_source: Freshwater Creek

ncbi_organism_name: Flavobacterium sp. ANB

ncbi_strain_identifiers: ANB

ncbi_submitter: Lycoming College


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: USA

ncbi_organism_name: Campylobacter coli 84-2

ncbi_submitter: Cornell University


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Aalborg University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_assembly_name: Rumen uncultured genome RUG571

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_country: Antarctica: Mackay Glacier regions; Mount George Murray

ncbi_isolation_source: mineral soil

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: metagenome

ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston Area

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Curtobacterium sp. MCBA15_016

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Orion


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University College Dublin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: EMG


ncbi_isolation_source: fermented dairy product

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Curtobacterium sp. BRD11

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: MD

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Amorphus sp. 3PC139-8

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources.


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_country: Pakistan: Hunza

ncbi_isolation_source: Glacier ice

ncbi_organism_name: Pseudomonas sp. BGI-2

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Jeollabuk-do

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter jeollabukensis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Yersinia alsatica

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Dripping Springs; Las Cruces; Organ Mountains; Las Cruces; NM

ncbi_isolation_source: fresh water from natural spring

ncbi_organism_name: Chryseobacterium viscerum

ncbi_strain_identifiers: DPS

ncbi_submitter: Bellevue University


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Thermoguttaceae bacterium LCP21S3_D1

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Janthinobacterium sp. MDB2-8

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolate: AOP35_02H_surf _bin _30

ncbi_organism_name: Moraxellaceae bacterium

ncbi_strain_identifiers: AOP35_02H_surf _bin _30

ncbi_submitter: Genoscope


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: MIT


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA673

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA673


ncbi_country: Antarctica:Skarvsnes; Hotoke-Ike lake

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas sp. HMP9

ncbi_submitter: Research Organization of Information and Systems


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Muproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Muproteobacteria;x__unclassified Candidatus Muproteobacteria;s__Candidatus Muproteobacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Sanguibacteroides justesenii


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA4265


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG13020

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_country: Russia: Samara

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico

ncbi_isolation_source: feces (Tadarida brasiliensis)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Tenterfield

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas vesicatoria

ncbi_submitter: La Trobe University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Calothrix sp. NIES-2100

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom

ncbi_isolation_source: water; most likely pond

ncbi_organism_name: Anabaena cylindrica PCC 7122

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;s__Anabaena cylindrica;x__Anabaena cylindrica PCC 7122


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: human

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: United Kingdom: Coventry

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_submitter: beijing


ncbi_country: Russia: Cheboksary

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_isolate: NCIMB 11383

ncbi_isolation_source: co-culture of Vampirovibrio chlorellavorus and Chlorella vulgaris originally obtained from freshwater reservoir

ncbi_organism_name: Vampirovibrio chlorellavorus

ncbi_strain_identifiers: NCIMB 11383

ncbi_submitter: University of Queensland


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Germany: Rostock; Unterwarnow

ncbi_isolation_source: polyethylene from brackish water

ncbi_organism_name: Bythopirellula polymerisocia

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: Thailand: Trang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0299438.4

ncbi_submitter: IGS


ncbi_isolation_source: human gut

ncbi_organism_name: Acetivibrio ethanolgignens


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2595698241 annotated assembly

ncbi_organism_name: Ruminobacter amylophilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom: England

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_submitter: Complutense University of Madrid


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1842R

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: New Hampshire;Rindge

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Franklin Pierce University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Shanghai Institute of Material Medica, Chinese Academy of Sciences


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Elioraea sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Hunan

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Klebsiella sp. GG_Kp147

ncbi_submitter: Max Rubner-Institut


ncbi_country: Jordan

ncbi_submitter: U.S. Food and Drug Administration


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridia bacterium UC5.1-1D10

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium UC5.1-1D10


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Aarhus University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Lonepinella sp. BR2357

ncbi_submitter: The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Thermomicrobiales bacterium


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Algimonas porphyrae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_R_8

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Galway


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Saanich Inlet 48; Vancouver Island; BC

ncbi_isolation_source: Intertidal zone

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Georgia Tech


ncbi_country: Iran: Pazenan oil field

ncbi_isolation_source: crude oil contaminated soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shiraz University


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Driveline

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: Finland

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia nurmii

ncbi_submitter: SC


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_organism_name: Vibrio vulnificus MO6-24/O

ncbi_submitter: National Research Laboratory of Molecular Microbiology and Toxicology, Center for Food Safety and Toxicology, Department of Food Science and Biotechnology, Seoul National University, Seoul 151-921, S. Korea.


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Knee

ncbi_organism_name: Paraclostridium sordellii


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_isolation_source: 8 month old female; liver and lung sample

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Mucilaginibacter xinganensis

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU staff rectal swab

ncbi_submitter: University of Birmingham


ncbi_country: South Korea

ncbi_isolation_source: Brown algae reservoir

ncbi_organism_name: Polaribacter sejongensis

ncbi_strain_identifiers: CECT 8670

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: USFDA


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Shanghai

ncbi_isolation_source: homemade natto

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Academy of Agricultural Sciences


ncbi_assembly_level: Chromosome

ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Pelleted chicken food

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai ocean university


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Micrococcus sp. HSID17227

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Corporacion Para Investigaciones Biologicas


ncbi_organism_name: Peptostreptococcus stomatis


ncbi_country: USA: Livingston; Alabama

ncbi_isolation_source: Grocery store organic basil

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Oklahoma State University - BIOinfOSU


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: sediment

ncbi_organism_name: Maritimibacter dapengensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: soil

ncbi_organism_name: Pseudoxanthomonas sangjuensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: Anaerostipes hadrus


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium SL_7_1

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: caecal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Bacteroidales bacterium UBA5072

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5072


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Mycoplasma putrefaciens Mput9231

ncbi_submitter: EVOLMYCO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_assembly_name: IMG-taxon 2693429820 annotated assembly

ncbi_organism_name: Beijerinckia sp. 28-YEA-48

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei DL2

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Anaerococcus pacaensis 9403502

ncbi_submitter: ebi


ncbi_country: Atlantic Ocean: near Brazil

ncbi_isolation_source: Fecal swab

ncbi_submitter: LAPCOM - FMVZ - USP


ncbi_country: Greece

ncbi_isolation_source: Greek sourdough

ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: GREENBREAD Project


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora arenicola DSM 45545

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Helicobacter ganmani


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Veillonella hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: Brazil

ncbi_organism_name: Diaphorobacter sp. JS3051

ncbi_submitter: Shanghaijiaotong university


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Georgia


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Nantong Hospital 3 of Nantong University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Austria

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Barnesiella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Indian Institute of Technology Roorkee


ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Blastomonas fulva

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Parma


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Eye Hospital


ncbi_organism_name: Hwanghaeella sp. 1Z406

ncbi_submitter: THIRD INSTITUTE OF OCEANOGRAPHY,MINISTRY OF NATURAL RESOURCES


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Methylobacterium sp.


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Owenweeksia sp.


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: McGill University


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: stool

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Water column of Lake Zurich; Switzerland

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-04207

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: Loki non-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_organism_name: Phycisphaerae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Florida

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: San Diego State University


ncbi_organism_name: Lysinibacillus sp. FSL H8-0500

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL H8-0500


ncbi_organism_name: Rhizorhabdus histidinilytica

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-392

ncbi_submitter: JCVI


ncbi_organism_name: Salmonella bongori serovar 40:z35:-

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: sporadic listeriosis case

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacillus cereus group sp. BceL221

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL221


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Proteiniphilum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Henan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Staphylococcus piscifermentans

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Butyricimonas faecalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Duffyella gerundensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Italy: Milan

ncbi_isolation_source: Screw

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_organism_name: Prescottella equi

ncbi_submitter: IZSM-Portici


ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Brain


ncbi_country: Sweden

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Spain: Balearic Islands; Palma de Mallorca

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter sp. CCUG 70166

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: USA

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Snodgrassella sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Mediterranea sp.


ncbi_country: USA: Bitterroot Valley; Montana

ncbi_isolation_source: Water

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Wolbachia endosymbiont of Litomosoides sigmodontis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: Veillonella nakazawae

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Lachnoclostridium sp.


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW507-14TSA

ncbi_submitter: Arkin Lab


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFOXYB2_FULL_47_14


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Apibacter sp.


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus USA_6

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Limimaricola cinnabarinus

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Corynebacterium sp. UMB2355A

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Bangladesh

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Divison of Bacterial Diseases, Centers for Disease Control


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2840

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2840


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Duke University


ncbi_isolation_source: wild bird

ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: ANSES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Phaeodactylibacter xiamenensis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Promix Biyoteknoloji Tarim Urunleri Muhendislik San. ve Tic. Ltd. Sti.


ncbi_organism_name: Halomonas sp. AOP27-A1-34

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Calditrichales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Firmicutes bacterium CAG:176

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:176


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-250

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Blastocatellia bacterium

ncbi_strain_identifiers: new MAG-250

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: Cold seep

ncbi_organism_name: Sulfurovum sp. bin170

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_organism_name: Xenorhabdus sp. SGI246

ncbi_submitter: Ordu University


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYA2_FULL_42_12


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: SurvCARE


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Seawater

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Bronch wash

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Nocardioides luteus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_assembly_name: IMG-taxon 2582581261 annotated assembly

ncbi_organism_name: Schwartzia succinivorans DSM 10502

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG411

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Porticoccus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseicyclus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Minho


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Bradyrhizobium sp. USDA 4545

ncbi_strain_identifiers: USDA 4545

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_submitter: TIGR/J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund;x__Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Anaerobacillus sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Distal colon


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: IMG-taxon 2667528184 annotated assembly

ncbi_organism_name: Microbulbifer yueqingensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Denmark: Kolind

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_strain_identifiers: Nanok


ncbi_organism_name: Achromobacter insolitus


ncbi_isolation_source: feces

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Pittsburgh


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Nose throat swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Rumen uncultured genome RUG10303

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Respiratory

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: USA: CA

ncbi_isolation_source: feces (Capra aegagrus hircus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: ON

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; time zero i.e. control

ncbi_organism_name: Candidatus Spongiisocius variivorans

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Candidatus Spongiisociales;f__Candidatus Spongiisociaceae;g__Candidatus Spongiisocius;s__Candidatus Spongiisocius variivorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Candidatus Spongiisociales;f__Candidatus Spongiisociaceae;g__Candidatus Spongiisocius;s__Candidatus Spongiisocius variivorans


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter sp. UBA4119


ncbi_isolation_source: sediment

ncbi_organism_name: Oceanirhabdus sp. W0125-5

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_country: China: Hunan

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Streptomyces sp. NPDC052036

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_submitter: The Mayo Clinic


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: SponGES


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Italy: Tuscany

ncbi_isolation_source: knots on olive twigs

ncbi_organism_name: Pseudomonas savastanoi pv. savastanoi

ncbi_submitter: Universita degli Studi della Tuscia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. savastanoi


ncbi_organism_name: Enterococcus casseliflavus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP19_D1_surf _bin _5

ncbi_organism_name: Marinomonas sp.

ncbi_strain_identifiers: AOP19_D1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin98

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: MDV bin98

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: JIlin Agriculture Science And Technology College


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolate: metabat2_coassembly_bwa.318 MAG

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.318 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 1060

ncbi_submitter: University of Exeter


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Imperialibacter sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Taiwan

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: continental shelf sea water microbial communities

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rhodococcus opacus PD630

ncbi_submitter: Institue of Biophysics,Chinese Academy of Sciences


ncbi_isolation_source: gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides caecimuris


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Millsboro; DE

ncbi_isolation_source: Isolated from the intestines of sick birds in the farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: USDA-ARS


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Assembly 1

ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni Cj1

ncbi_submitter: University of Exeter


ncbi_organism_name: Xenorhabdus nematophila


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Streptomyces sp. NPDC090032

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: SponGES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacteroides xylanisolvens SD CC 1b

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 1b


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Treponema vincentii ATCC 35580

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Candidatus Geothermincolales bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;x__unclassified Candidatus Geothermincolales;s__Candidatus Geothermincolales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Pakistan: Khyber Pakhtunkhwa

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: USA: Detroit

ncbi_isolation_source: Tricuspid valve; septal leaflet

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_strain_identifiers: SB

ncbi_submitter: SysMilk


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Massilia sp. YIM B04103

ncbi_submitter: Yunnan university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;x__Telluria group;g__Massilia;x__unclassified Massilia;s__Massilia sp. YIM B04103


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_assembly_name: Salmonella enterica CVM N51271 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: uncultured Bariatricus sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Hong Yuan

ncbi_organism_name: Microbispora sp. H10949

ncbi_submitter: Sichuan Industrial Institute of Anotibioctics


ncbi_country: China: Weifang

ncbi_isolation_source: sick pig liver

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Paracoccus solventivorans

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridioides difficile 342

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Spain: Asturias

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Kineothrix alysoides

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics