ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_assembly_name: Clostridium jeddahtimonense

ncbi_genome_representation: full

ncbi_organism_name: Clostridium jeddahitimonense

ncbi_submitter: URMITE


ncbi_assembly_level: Complete Genome

ncbi_country: Germany

ncbi_isolation_source: human listeriosis

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: 12-05460;clinical isolate of L. monocytogenes

ncbi_submitter: ROBERT KOCH INSTITUT


ncbi_assembly_level: Contig

ncbi_country: USA

ncbi_isolation_source: nasal passage from dialysis patient control

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIGC348


gtdb_representative: t

ncbi_country: China: Beijing

ncbi_organism_name: Pseudomonas songnenensis

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences

ncbi_type_material_designation: assembly from type material


ncbi_country: Denmark: Dyrehaven

ncbi_isolation_source: soil of natural resort

ncbi_organism_name: Chryseobacterium sp. D764

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2853

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Morganella morganii

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_assembly_name: De novo

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Hanamia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Propionivibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces rubrogriseus


ncbi_organism_name: Streptomyces sp. rh45

ncbi_submitter: Cornell University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Paraburkholderia humisilvae

ncbi_strain_identifiers: NCAIM B.02543

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0147

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Volar forearm swab

ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae


ncbi_organism_name: Bacillus sp. N447-1

ncbi_submitter: microbial pathogenic ecology group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N447-1


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-1276

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: drinking water from drinking water treatment plant

ncbi_organism_name: Bacillus sp. CECT 9360

ncbi_submitter: University of Valencia, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CECT 9360


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Zhejiang University


ncbi_country: Ecuador: Colon Eloy

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antioquia


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Psychrobacter sp. JCM 18900

ncbi_submitter: The University of Tokyo


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Australia: Melbourne

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Monash University


ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Colon

ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: Israel

ncbi_isolation_source: Patient

ncbi_submitter: Harvard TH Chan School of Public Health


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. KLE 1728

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: cabbage

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Brachymonas denitrificans

ncbi_submitter: Linnaeus University


ncbi_assembly_name: Rumen uncultured genome RUG13615

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Solibacillus merdavium

ncbi_submitter: Quadram Institutte


ncbi_country: Germany

ncbi_organism_name: Psychrobacillus sp. BL-248-WT-3

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Paenibacillus sp. V4I5

ncbi_strain_identifiers: K16b V4I5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: sea sand

ncbi_organism_name: Arthrobacter sp. CAU 1506

ncbi_submitter: Chung-Ang University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: PaEhEh

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Thailand: Ubon; Kemarach

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Pararhizobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Russia

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter festucae

ncbi_strain_identifiers: VKM Ac-2802

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: Croatia: Split

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Aneurinibacillus sp. REN35

ncbi_submitter: Beijing Technology and Business University


ncbi_assembly_name: Rumen uncultured genome RUG13309

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Aquaculture pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_country: USA: IA

ncbi_isolation_source: feces (Meleagris sp.)

ncbi_submitter: FDA/CFSAN


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces asiaticus

ncbi_submitter: BGI Research


ncbi_country: Iran

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA1910

ncbi_submitter: University of Queensland


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Spirillospora sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus sp. AZ093

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Salmonella sp. NW241

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: lake sediment


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Germany

ncbi_organism_name: Providencia vermicola

ncbi_submitter: UNIVERSITY OF NAPLES "FEDERICO II"


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Desulfobulbus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle

ncbi_isolation_source: blood

ncbi_organism_name: Helicobacter sp. CLO-3

ncbi_submitter: UW


ncbi_country: Uruguay: Juanico; Canelones

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; Uruguay winery wastewater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;s__Candidatus Komeilibacteria bacterium S1_H12


ncbi_assembly_name: LM09-00865 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: isolated from adult of Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Dehalococcoidia bacterium UBA6952

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- LinL1_bin-0645

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthoniobacter sp.

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Brucella sp. NBRC 12951

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: New York

ncbi_organism_name: Pantoea piersonii

ncbi_submitter: University of Rochester Medical Center


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Lake Stechlin

ncbi_isolation_source: 10 single cells amplified by MDA; cell type akinete; from sediment

ncbi_organism_name: Dolichospermum sp. ST_sed7

ncbi_submitter: CSIRO


ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: The Aga Khan University Hospital


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Treponema succinifaciens

ncbi_submitter: EMG


ncbi_isolate: CTENA7 L123

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_strain_identifiers: CTENA7 L123

ncbi_submitter: University of Vienna


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Metamycoplasma hominis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pretoria


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Kyrpidia spormannii

ncbi_submitter: RADBOUD UNIVERSITY


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Daejeon

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: Korea Research Institute Bioscience and Biotechnology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ferrovibrio sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: cheese

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Ligilactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Nanjing Normal University


ncbi_country: Viet Nam:Thai Binh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Osaka Institute of Public Health


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_country: Austria

ncbi_organism_name: Arthrobacter castelli DSM 16402

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Morocco

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: patientI

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus crispatus SJ-3C-US

ncbi_submitter: Broad Institute


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: qige sewage treatment plant; Hangzhou

ncbi_isolation_source: Anaerobic sludge in qige sewage treatment plant

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: Zhejiang University of Technology


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: France: Paris

ncbi_isolation_source: bronchial exudate

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Bichat


ncbi_country: Uganda: Kasese

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: LAMZ-Dg

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Ziya Circular Economy Park

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Nankai University


ncbi_country: South Korea

ncbi_isolation_source: sludge

ncbi_organism_name: Miniimonas sp. S16

ncbi_submitter: Jeju National University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Ectobacillus funiculus

ncbi_submitter: Nanyang Normal University


ncbi_country: South Africa: FOSA Hospital

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0044

ncbi_submitter: Broad Institute


ncbi_country: USA: Forestville city on Sonoma county

ncbi_isolation_source: External abscess and pneumonia: this isolate from lungs

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Proteus cibi

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. BRX8-7

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Antarctica: King George Island; Estrellas Lake

ncbi_isolation_source: sediment

ncbi_organism_name: Arthrobacter sp. EM1

ncbi_submitter: Universiti Malaysia Sabah


ncbi_organism_name: Methylovorus sp. MP688

ncbi_submitter: Beijing Institute of Biotechnology


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium europaeum

ncbi_submitter: University of Trento


ncbi_country: USA

ncbi_isolation_source: patient at Walter Reed Army Medical Center with a bloodstream infection

ncbi_organism_name: Acinetobacter baumannii AB059

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Aphodoplasma;s__Candidatus Aphodoplasma excrementigallinarum


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P133P

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13796

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Hymenobacter saemangeumensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: USA: Waller Creek; Texas

ncbi_organism_name: Synechococcus elongatus UTEX 3055

ncbi_strain_identifiers: UTEX 3055

ncbi_submitter: University of California, San Diego


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: bacterium CPR1

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: USDA


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Hyphomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_assembly_level: Chromosome

ncbi_submitter: China Medical University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Alistipes communis


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Alcaligenaceae bacterium


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Bacillus paramycoides


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Caldimonas aquatica

ncbi_submitter: Silla University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_country: China: Xi an city moat

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. 102

ncbi_submitter: University of Gafsa


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain

ncbi_isolation_source: human breast milk

ncbi_organism_name: Parascardovia denticolens IPLA 20019

ncbi_submitter: IPLA-CSIC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Evtepia faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia faecigallinarum


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Ja1_bin-1361

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Leptospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: USA: BIFSCo Region 2

ncbi_isolation_source: bovine pre-evisceration carcass

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1926


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio kushneri

ncbi_submitter: Universidad de Sevilla


ncbi_organism_name: Neisseria gonorrhoeae FA 1090

ncbi_submitter: Univ. Oklahoma


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Qinghai Tibetan Plateau

ncbi_isolation_source: intestinal content

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Taiwan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_submitter: Beijing genomics institute


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: Salmonella enterica CVM 43781 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult bronchiectasis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 304

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 2579

ncbi_submitter: University of Calgary


ncbi_isolation_source: Human feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11323

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 507

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: lake water

ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: Poland: Torun

ncbi_isolation_source: Milk product waste

ncbi_organism_name: Priestia megaterium

ncbi_submitter: BactoTech


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The University of Queensland


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0326

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_submitter: Ocena university of China


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Cetobacterium somerae ATCC BAA-474

ncbi_strain_identifiers: ATCC BAA-474

ncbi_submitter: Washington University


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Galbibacter orientalis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources, P.R.China


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Ja2_bin-1118

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Sulfurospirillum cavolei

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: France

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Tibet

ncbi_isolation_source: adult feces

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_strain_identifiers: IMAU FB087

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bifidobacterium choerinum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Cytophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Instituto de Higiene e Medicina Tropical - Universidade Nova de Lisboa


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Acinetobacter sp.


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: North South university


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Scatovicinus merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatovicinus;s__Candidatus Scatovicinus merdipullorum


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: USFDA


ncbi_country: Mexico: Cuernavaca; Morelos

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCGB01

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_submitter: The University of Auckland


ncbi_isolation_source: Pre-slaughter chicken

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Germany: River Weser; Bremen

ncbi_isolation_source: water of ditches and river

ncbi_organism_name: Aromatoleum bremense

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Italy: L Aquila

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Bolivia: La Paz; Choqueyapu River

ncbi_isolation_source: water

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Karolinska Institutet


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Umea_bin-07356

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Serbia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_isolation_source: Healthy Mulberry Endophytes

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: South china agriculture university


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: sputum sample

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolate: BcbvaCA

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: BcbvaCA

ncbi_submitter: ROBERT KOCH-INSTITUTE


ncbi_organism_name: Paenibacillus haidiansis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Peptostreptococcus anaerobius CAG:621

ncbi_submitter: DTU


ncbi_country: South Korea:Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: nasopharynx


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_assembly_name: Rumen uncultured genome RUG12898

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Leucobacter iarius

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: Thailand: Songkhla

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: IMG-taxon 2599185259 annotated assembly

ncbi_organism_name: Legionella quinlivanii DSM 21216

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 301


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 978

ncbi_submitter: USDA-ARS


ncbi_country: Mexico

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: CINVESTAV


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 104 (4-6977960)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 104 (4-6977960)


ncbi_country: Poland

ncbi_isolation_source: rectal swab of nestling

ncbi_organism_name: Bordetella sp. 15P40C-2

ncbi_submitter: Robert Koch-Institut


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: China: Beijing

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Marinilabiliaceae bacterium UBA5488

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: XR

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_strain_identifiers: XR

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: acid gruel

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Streptomyces umbrinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_isolation_source: humus forest soil

ncbi_organism_name: Limnobacter humi

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: Surgical Site Infection (SSI)

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Hunan University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Mitsuokella multacida DSM 20544

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Candidatus Villigracilis affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Candidatus Villigracilaceae;g__Candidatus Villigracilis;s__Candidatus Villigracilis affinis


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: Russia: Saint-Petersburg

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Marinobacter salarius

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: Chung-Ang Univiersity


ncbi_organism_name: Klebsiella sp. CN_Kp116

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: University of Cadiz


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Pseudomonas vlassakiae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Tsinghua University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Mycobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Chloroflexi bacterium TMED230

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium TMED230


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_country: Spain: Santander

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_country: China

ncbi_organism_name: Leisingera sp. M523

ncbi_submitter: Ocean University of China


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Eggerthella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Lachnotalea glycerini

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea: Imsil

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides eggerthii


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Olsenella uli DSM 7084

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli;x__Olsenella uli DSM 7084


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Health Protection Agency


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_isolation_source: Joint fluid

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Northumbria University


ncbi_assembly_name: freshwater MAG --- KR_bin-1505

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Egypt: Alexandria

ncbi_submitter: University of East Anglia


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Belgium: Sint-Katelijne-Waver; greenhouse 4

ncbi_isolation_source: Hydroponic greenhouse

ncbi_organism_name: Agrobacterium salinitolerans

ncbi_submitter: KU Leuven


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Tunisia: Gafsa

ncbi_isolation_source: phosphogypsum piles

ncbi_organism_name: Bacillus albus

ncbi_strain_identifiers: PG 17

ncbi_submitter: University of Neuchatel


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: gut

ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Wolbachia endosymbiont of Andrena labialis

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: India

ncbi_isolation_source: marine sediment

ncbi_organism_name: Bacillus sp. DSM 27956

ncbi_submitter: CSIR- National Chemical Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DSM 27956


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Bryn Mawr; PA

ncbi_isolation_source: apartment interior at Bryn Mawr College

ncbi_organism_name: Exiguobacterium sp. BMC-KP

ncbi_strain_identifiers: BMC-KP

ncbi_submitter: Bryn Mawr College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. BMC-KP


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: International Space Station

ncbi_isolation_source: Nomex 8

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Christian Medical College


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Granulosicoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Trebonia sp.

ncbi_submitter: National University of Singapore


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: silage

ncbi_organism_name: Lapidilactobacillus dextrinicus DSM 20335

ncbi_submitter: Shanghai Majorbio


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum

ncbi_submitter: EMG


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Portugal: Praia de Moledo; Caminha

ncbi_isolation_source: intertidal zone; Sabellaria alveolata reef

ncbi_organism_name: Synechocystis salina LEGE 00031

ncbi_submitter: CIIMAR


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Caecum


ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Hospital La Paz


ncbi_isolate: SPRUCE 89

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_strain_identifiers: SPRUCE 89

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rothia dentocariosa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Salmonella sp. NW1029

ncbi_submitter: Sichuan University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Miguel Servet University Hospital


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Lysobacterales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Endobacter medicaginis

ncbi_strain_identifiers: CECT 8088

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Paraburkholderia diazotrophica

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Zhanjiang

ncbi_organism_name: Mesonia sp. HuA40

ncbi_submitter: School of Life Sciences


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University El Bosque


ncbi_assembly_name: IMG-taxon 2636416172 annotated assembly

ncbi_organism_name: Bacillus sp. 103mf

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 103mf


ncbi_country: USA: Minesota

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: addis ababa university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Imperial College London


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE147

ncbi_submitter: Broad Institute


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolate: grey variant

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: grey variant;AB5075

ncbi_submitter: University of Birmingham


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Animal - Avian

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19971331


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal grab

ncbi_submitter: USDA


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: fermented drink

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 770

ncbi_submitter: Brigham Young University


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_submitter: Universiti Malaya


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Fusobacterium nucleatum CTI-2


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Algeria: Setif

ncbi_isolation_source: oral cavity pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV263

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Nagambie

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MA; Boston

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Broad Institute


ncbi_assembly_name: IMG-taxon 2667527377 annotated assembly

ncbi_organism_name: Tistlia consotensis USBA 355

ncbi_strain_identifiers: USBA 355

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Raoultella sp. Lac1

ncbi_submitter: Shenzhen University


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: SRCAMB


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Iran

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: USA: NY

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Marinomonas sp.


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8484

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_submitter: Stanford Healthcare


ncbi_country: India: Karnataka

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Center for Life Sciences, National Laboratory Astana, Nazarbayev University


ncbi_country: Tunisia: Kef

ncbi_isolation_source: plant tissue from nut farm

ncbi_organism_name: Rhodococcoides kroppenstedtii

ncbi_submitter: National Institute of Agronomy, Tunis, Carthage University


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangxi

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Fluviispira vulneris

ncbi_submitter: Hunan Normal University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Enterobacter cloacae


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Lebanon: Beirut

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Hong Kong

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Italy: Friuli Venezia Giulia

ncbi_organism_name: Spiroplasma sp. ChiS

ncbi_strain_identifiers: ChiS

ncbi_submitter: University of Udine


ncbi_submitter: University of Nebraska


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Ghent University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Nitrosomonas sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Chitinispirillaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolate: SPRUCE 167

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 167

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolate: SPRUCE 407

ncbi_strain_identifiers: SPRUCE 407


ncbi_organism_name: Salmonella sp. 741265064_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 47


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: Streptomyces sp. NPDC013171

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Frozen surimi product from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces arboris


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Dialister micraerophilus


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Kocuria salsicia


ncbi_organism_name: Terricaulis sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Heyndrickxia oleronia

ncbi_strain_identifiers: FAIRING 12A-4

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium sp. BIOML-A2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Morganella morganii

ncbi_submitter: The University of Hong Kong


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Pseudochelatococcus contaminans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chryseobacterium sp.


ncbi_isolation_source: terrestrial

ncbi_organism_name: Caldanaerobacter subterraneus

ncbi_submitter: University of Queensland


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaeta sp.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: colon

ncbi_strain_identifiers: CVUAS 11262

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_organism_name: Turicimonas muris


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. Root1203

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoplanes serenus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Air filter

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Microcoleus sp. M2_D4

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA: GA

ncbi_isolation_source: Chicken Wings

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Le Mans

ncbi_isolation_source: Joint fluid

ncbi_submitter: CHU de Rennes


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Nostocoides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain: Alicante

ncbi_isolation_source: 0.22 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Alcaligenaceae bacterium UBA971

ncbi_submitter: University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Phocaeicola dorei 5_1_36/D4

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Flavobacterium sp. UBA6195


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: School of Biosciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 7610

ncbi_submitter: INRA


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud