ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Caecum

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Thalassobaculum sp. OXR-137

ncbi_submitter: Gloucester Marine Genomics Institute


ncbi_assembly_level: Contig

ncbi_assembly_name: Rumen uncultured genome RUG12118

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli T924_01

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Leminorella richardii

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:Midlands

ncbi_strain_identifiers: Bir 402


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium tropiciagri

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: South Africa:Mookgophong

ncbi_isolation_source: cuticle of a termite worker

ncbi_organism_name: Actinomadura sp. RB99

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: public transports

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Rhodopseudomonas sp. AAP120

ncbi_submitter: Institute of Microbiology, ASCR


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Szechuan

ncbi_isolation_source: Pit mud of baijiu fermentation

ncbi_organism_name: Arthrobacter beigongshangensis

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_country: Spain: Oviedo

ncbi_isolation_source: urine

ncbi_strain_identifiers: Ec-HUCA 7

ncbi_submitter: Centro de Investigacion Biomedica de La Rioja


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6503

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: India

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Spain: Seville

ncbi_isolation_source: blood

ncbi_submitter: University Hospital Virgen del Rocio


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Korea Food Research Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Xanthomonas sp. CPBF 1483  hybrid assembly

ncbi_isolate: Xanthomonas sp. CPBF 1483

ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: Xanthomonas sp. CPBF 1483

ncbi_submitter: CIBIO-Inbio


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli KTE25

ncbi_submitter: Broad Institute


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Klebsiella sp. GW_Kp181

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Catenulispora rubra

ncbi_submitter: Nicolaus Copernicus University


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6022


ncbi_country: China: NeiMonggal

ncbi_isolation_source: diseased cattle

ncbi_organism_name: Brucella abortus bv. 3

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 3


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC088555

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Salmonella sp. NW120

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_assembly_name: Rumen uncultured genome RUG10398

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Delftia acidovorans


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Polyu


ncbi_organism_name: Pandoraea sputorum

ncbi_submitter: Hubei Provincial Center for Disease Control and Prevention


ncbi_country: Australia: Newcastle

ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Magnetospirillum gryphiswaldense

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_organism_name: Christensenella sp. UBA4683


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: fermentation

ncbi_organism_name: Prevotella sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ICAR-CIBA


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella sp. CN_Kp097

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mesorhizobium sp. M0053

ncbi_submitter: Washington State University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. LE19-114.1B

ncbi_submitter: University of Michigan


ncbi_country: Antarctica: Fumarole Bay; Deception Island

ncbi_isolation_source: sediment

ncbi_organism_name: Anoxybacillus sp. LAT_31

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA

ncbi_isolation_source: marine sediment sample bbl-31

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Basel


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: faece

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: food processing facility

ncbi_organism_name: Gulosibacter sediminis

ncbi_submitter: Penn State University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Baengnokdam Summit Crater Area; Mt. Halla

ncbi_organism_name: Paenibacillus sp. JNUCC32

ncbi_submitter: Jeju National University


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Pseudomonas danubii

ncbi_submitter: Medical University Graz


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Veterinary and Animal Sciences, Lahore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-1070

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: Germany

ncbi_isolation_source: surveillance sample (rectal swab)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Tropheryma whipplei str. Neuro20

ncbi_submitter: ebi


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodococcus baikonurensis

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_organism_name: Lactococcus garvieae subsp. garvieae


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Calgary


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_assembly_name: IMG-taxon 2675903153 annotated assembly

ncbi_organism_name: Amycolatopsis pretoriensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_assembly_level: Chromosome

ncbi_country: Australia

ncbi_isolation_source: sputum of a melioidosis patient admitted to Royal Darwin Hospital; Northern Territory; Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR346

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 1

ncbi_submitter: Universidad Central del Ecuador


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC051576

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: New Zealand: North Canterbury

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: The New Zealand Institute for Plant and Food Research Limited


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Sphingorhabdus rigui

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Portugal: Porto

ncbi_isolation_source: gut of fish fed a soybean meal-based diet

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: CIIMAR - Interdisciplinary Centre of Marine and Environmental Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Thiobacillus sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_assembly_name: MHOCP

ncbi_organism_name: Neomoorella humiferrea

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Vicinamibacterales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Quanzhou Women's and Children's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Paenibacillus sp. FSL F4-0097

ncbi_submitter: Penn State


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: soil

ncbi_organism_name: Kitasatospora phosalacinea

ncbi_submitter: University of Illinois


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


gtdb_type_species_of_genus: t

ncbi_organism_name: Pseudopedobacter beijingensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Serratia sp. CY63765

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY63765


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Iran: Tehran

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: University of Tehran


ncbi_assembly_name: Rumen uncultured genome RUG12174

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Syria

ncbi_isolation_source: throat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: USA: shoreline 200 m south of Scripps Pier; La Jolla; CA

ncbi_isolation_source: unidentified sponge fragment

ncbi_organism_name: Streptomyces sp. AJS327

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Rubrobacteraceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: uncultured Clostridium sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0602

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: India: Maynaguri

ncbi_organism_name: Lysinibacillus sp. OL1

ncbi_submitter: UNIVERSITY OF NORTH BENGAL


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Saliva

ncbi_organism_name: Haemophilus parainfluenzae


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: sea water

ncbi_organism_name: Marinobacter flavimaris

ncbi_submitter: Chunlab


ncbi_organism_name: Paraglaciecola mesophila KMM 241

ncbi_strain_identifiers: KMM 241

ncbi_submitter: Shandong University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: University of Minnesota


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_country: China: Chongqing; Wanzhou; Houshan

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: South Korea: Uijeongbu-si

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter translucens

ncbi_submitter: Seoul Women's University


ncbi_isolation_source: aspirate

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Lake Washington

ncbi_organism_name: Flavobacterium sp. 123

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Slovenia

ncbi_isolation_source: Raw bulk milk

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_organism_name: uncultured Nitrospinaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Qubec

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio antiquarius

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio antiquarius


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Parasynechococcus marenigrum WH 8102


ncbi_country: USA: Oak Ridge; Field Research Center

ncbi_isolation_source: sediment from well EB271

ncbi_organism_name: Janthinobacterium sp. EB271-G4-3-1

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Tyzzerella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: Chinese Academy of Agricultural Sciences, Institute of Plant Protection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: South Korea: Gyeonggi

ncbi_isolation_source: Cheonggukjang

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-388-E21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: China: Shanghai

ncbi_isolation_source: waste landfill

ncbi_organism_name: Microbacterium candidum

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_country: Lebanon

ncbi_organism_name: Brucella sp. CMUL 034

ncbi_strain_identifiers: CMUL 034

ncbi_submitter: LAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;x__unclassified Brucella;s__Brucella sp. CMUL 034


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: MSM 2

ncbi_submitter: Avinashilingam Institute for Home Science and Higher Education for Women

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Sphingomonas sp. RT2P30

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Hoylesella timonensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: marine microbial mat sampled in Great Sippewissett Salt Marsh at the Atlantic coast (Woods Hole; Mass.; USA).

ncbi_organism_name: Thiorhodococcus drewsii AZ1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_submitter: SC


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Micromonospora humida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0875

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Treponema sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidaminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: activated sludge and biofilm from membrane bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Listeria marthii

ncbi_submitter: PulseNet USA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sphaerimonospora cavernae

ncbi_strain_identifiers: TBRC 1851

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Clavibacter zhangzhiyongii

ncbi_submitter: University of Tehran


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: China: Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shahid Chamran University of Ahvaz


ncbi_organism_name: Salmonella sp. SJTUF15605

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_submitter: MMUST biological


ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: Laboratory of Fish Diseases Faculty of Veterinary Medicine, Okayama University of Science


ncbi_organism_name: Dehalococcoidales bacterium


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_submitter: Inje University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-540

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: insect

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_assembly_name: freshwater MAG --- KT_bin-2687

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: market

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_assembly_name: Rumen uncultured genome RUG10974

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Xanthomonas sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTsouthwestern Medical Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: EMG


ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Infective secretion

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Salmonella sp. C3184

ncbi_submitter: Sichuan University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: groundwater

ncbi_organism_name: Limnobacter sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: Taiwan

ncbi_isolation_source: coral

ncbi_organism_name: Endozoicomonas sp. 4G

ncbi_submitter: Academia sinica


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterobacteriaceae bacterium UBA4747

ncbi_submitter: University of Queensland


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Thiogranum sp.

ncbi_submitter: Yantai University


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_organism_name: Mesorhizobium sp. M0046

ncbi_submitter: Washington State University


ncbi_country: France: Bordeaux

ncbi_submitter: University of Bath


ncbi_country: Kuwait

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Nottingham


ncbi_country: Costa Rica

ncbi_isolation_source: poultry rinse

ncbi_submitter: INCIENSA


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China:Hong Kong

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudobacteriovorax antillogorgiicola

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG11736

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Virgibacillus alimentarius J18

ncbi_country: South Korea: Goheung

ncbi_isolation_source: traditional fermented food (gizzard shad)

ncbi_organism_name: Virgibacillus alimentarius

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_43_16


ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA

ncbi_isolation_source: Cecal Young Chicken

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N44396F

ncbi_submitter: FDA


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] brachy

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0627

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Serratia sp. CY48663

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY48663


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Phage Research Center, Liaocheng University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Desulfatibacillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin12

ncbi_submitter: JAMSTEC


ncbi_assembly_name: freshwater MAG --- LJ_bin-4625

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudahrensia aquimaris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 29

ncbi_isolation_source: acid mine drainage site biofilm from limestone lined outflow channel community

ncbi_organism_name: Legionellales bacterium

ncbi_strain_identifiers: MAG 29

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-96

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_strain_identifiers: new MAG-96

ncbi_submitter: Micoorganism


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Israel

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Israel Institute for Biological Research


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: South Korea: Naju

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Yellow Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Arenibacter sp. A80

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli p0305293.15

ncbi_submitter: IGS


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_assembly_name: msinus

ncbi_isolate: mcapsa

ncbi_organism_name: Methylocapsa aurea

ncbi_strain_identifiers: mcapsa

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Xiamen University


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Arthrobacter crystallopoitesv3.1

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter crystallopoietes BAB-32

ncbi_submitter: Gujarat Genomics Initiative


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA1322

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA1322


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CHUV-UNIL


ncbi_country: Romania: Targoviste

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_isolation_source: CSF

ncbi_organism_name: Escherichia coli


ncbi_country: Tunisia

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas fluorescens NCIMB 11764

ncbi_strain_identifiers: NCIMB 11764

ncbi_submitter: University of North Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas fluorescens;x__Pseudomonas fluorescens NCIMB 11764


ncbi_country: Thailand

ncbi_isolation_source: blood

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Alicyclobacillus tengchongensis

ncbi_submitter: Yunnan normal university


ncbi_organism_name: Alteromonas oceani

ncbi_submitter: Xiamen University


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: South Korea

ncbi_isolation_source: Plant

ncbi_organism_name: Cellulomonas sp. JH27-2

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Candidatus Amarobacter glycogenicus

ncbi_submitter: Aalborg University


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: gut content

ncbi_organism_name: Adlercreutzia muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. ADPe

ncbi_strain_identifiers: ADPe

ncbi_submitter: INRA


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: human feces (woman; 60 years old)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: FSBSI Institute of Experimental Medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Paenibacillus allorhizosphaerae

ncbi_submitter: Institut Pasteur


ncbi_assembly_name: Rumen uncultured genome RUG10652

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cobetia sp.


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Anaerocolumna jejuensis

ncbi_submitter: University of Sao Paulo


ncbi_country: Japan:Hokkaido; Akan

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis californica

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_organism_name: Escherichia coli ATCC BAA-2192

ncbi_strain_identifiers: ATCC BAA-2192

ncbi_submitter: American Type Culture Collection


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Bangladesh: Matlab

ncbi_isolation_source: Human feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: icddr,b


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_strain_identifiers: ATCC 4352

ncbi_submitter: University of Wroclaw


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of California, Berkeley


ncbi_country: South Korea: Jeollanam-do; Jangseong-gun

ncbi_organism_name: Novosphingobium sp. KACC 22771

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_assembly_name: freshwater MAG --- Loc090721-6m_bin-609

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_country: Antarctica: Western Antarctic Peninsula; King George Island.

ncbi_isolation_source: marine sponge

ncbi_organism_name: Sporosarcina sp. E16_8

ncbi_submitter: Universidad Mayor


ncbi_country: Italy

ncbi_isolation_source: cervico-uterine swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Istituto Zooprofilattico di Puglia e Basilicata

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Russia: Byelii Yar; Tomsk region (Western Siberia)

ncbi_isolation_source: 2-km deep subsurface thermal aquifer

ncbi_organism_name: Candidatus Ozemobacter sibiricus

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Ozemobacteria;o__;f__Candidatus Ozemobacteraceae;g__Candidatus Ozemobacter;s__Candidatus Ozemobacter sibiricus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;c__Candidatus Ozemobacteria;x__Candidatus Ozemobacterales;f__Candidatus Ozemobacteraceae;g__Candidatus Ozemobacter;s__Candidatus Ozemobacter sibiricus


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Paenibacillus sp. RS8

ncbi_submitter: Athabasca University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Aestuariivirga sp.


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA3758

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-1487

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Peptostreptococcus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sudan

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: Estonia: Tartumaa; Laeva vald

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 35

ncbi_submitter: USDA-ARS


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Nebraska

ncbi_submitter: USDA


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Bacillus smithii


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Taizhou University


ncbi_country: China: Heilongjiang; Harbin

ncbi_isolation_source: soil used for soybean agriculture

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Agriculture Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Israel

ncbi_organism_name: Brachymonas chironomi DSM 19884

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Parma

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Parma


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-E1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: New York University


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: Brazil

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Guangxi University


ncbi_organism_name: Synechococcus elongatus IITB3

ncbi_submitter: Indian Institute of Technology Bombay


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Stenotrophomonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG10554

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA47597

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: IMG-taxon 2713897449 annotated assembly

ncbi_organism_name: Paenibacillus sp. RU26A

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptococcus pneumoniae AP200

ncbi_submitter: Istituto di Teconologie Biomediche, Consiglio Nazionale delle Ricerche


ncbi_isolation_source: abscess labia

ncbi_organism_name: Olsenella sp. HMSC062G07

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Canterbury Health Laboratories


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB11-371

ncbi_submitter: Broad Institute


ncbi_isolation_source: freshwater

ncbi_organism_name: Anabaena cylindrica FACHB-243

ncbi_submitter: South China Normal University


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: South Korea

ncbi_isolation_source: Imported chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01233

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01233


ncbi_country: China: Changsha

ncbi_isolation_source: balf

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Japan

ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rakuno Gakuen University


ncbi_country: USA: PA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Burkholderia sp. BCC1999

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Providencia heimbachae

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Distal colon


ncbi_isolation_source: Meju fermented soybeans

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Seoul National University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Senegal

ncbi_isolation_source: breast milk

ncbi_submitter: IHU Genomes


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: Fecal samples

ncbi_isolation_source: CEREMI

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Bacillus cereus group sp. BceL094

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL094


ncbi_isolate: AOP40_8SA_coeur _bin _9

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_strain_identifiers: AOP40_8SA_coeur _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: Flavobacterium succinicans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Ralstonia sp. 3PA37C10

ncbi_submitter: University of Trento


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Viet Nam:Thai Binh

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Osaka Institute of Public Health


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Shanxi Province

ncbi_isolation_source: soil

ncbi_organism_name: Rhodohalobacter sp. SW132

ncbi_submitter: Institute of Microbiology


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Kordiimonadales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Shenzhen; Nanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Levilactobacillus acidifarinae

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: California

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Aarhus University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Candidatus Anoxymicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Anoxymicrobiaceae;x__unclassified Candidatus Anoxymicrobiaceae;s__Candidatus Anoxymicrobiaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_organism_name: Streptococcus pneumoniae 2009

ncbi_submitter: Research Institute of Physical-Chemical Medicine, Moscow, Russia


ncbi_country: South Africa: North-West

ncbi_isolation_source: drinking water from distribution plants

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: North-West University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ulvibacterium marinum

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus OCMM6049

ncbi_submitter: Broad Institute


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: wastewater treatment reactor

ncbi_organism_name: Thauera sp. 63

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Segatella copri

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_country: Singapore

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Singapore


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Equadaptatus faecalis

ncbi_submitter: Quadram Institute


ncbi_country: Denmark: near Hvidovre

ncbi_isolation_source: soil from courtyard of a former plant nursery located above a BAM-contaminated aquifer

ncbi_organism_name: Aminobacter sp. MSH1

ncbi_submitter: KULeuven


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: University of Queensland


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Egypt

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: distillery sour grain mash incubated at 45C

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: CIRM-BIA 675

ncbi_submitter: Brigham Young University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: throat

ncbi_organism_name: Rothia sp. HMSC061C12

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC061C12


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Kosakonia sp. S42

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_organism_name: Clostridioides difficile P33

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_country: Madagascar

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institut Pasteur de Madagascar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Tanzania: Dar es Salaam

ncbi_submitter: University of Bergen


ncbi_country: China: Xiamen

ncbi_isolation_source: Synechococcus culture from coastal marine water

ncbi_organism_name: Synechococcus sp. XM-24

ncbi_submitter: Xiamen University


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Paludibacter sp. UBA6032

ncbi_submitter: University of Queensland


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 58 (4-2839709)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 58 (4-2839709)


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Brevundimonas sp. MYb46

ncbi_submitter: Zoological Institute, Kiel University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cyanobium sp. C1_MAG_00004

ncbi_submitter: University of Montreal


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Gastroenteritis patient

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: UNIVERSITY OF SHEFFIELD


ncbi_country: China: Yunnan

ncbi_isolation_source: lake water

ncbi_organism_name: Rhodanobacteraceae bacterium JHOS43

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Hainan

ncbi_isolation_source: food poisoning

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Mississippi State University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Gordonibacter urolithinfaciens


ncbi_organism_name: Staphylococcus succinus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Streptomyces sp. NPDC092045


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: Pedobacter suwonensis


ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Calditrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology