ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Algimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Breznakia sp. PH5-24

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile: Estacion las Cruces

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Vibrio sp. CL1

ncbi_submitter: University of Cambridge


ncbi_country: Antarctica: Lake Fryxell

ncbi_isolation_source: microbial mat

ncbi_organism_name: Flavobacterium fryxellicola

ncbi_submitter: Korea University

ncbi_type_material_designation: assembly from type material


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii NIPH 70

ncbi_strain_identifiers: NIPH 70

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 70


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_country: Norway

ncbi_submitter: Nofima


ncbi_isolation_source: marine sediment

ncbi_organism_name: Thalassotalea sediminis

ncbi_refseq_category: reference genome

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: UCC strain

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1730

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pedosphaera sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water from culvert

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Montana State University


ncbi_country: USA: Pacific Coast

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_assembly_name: IMG-taxon 2585428082 annotated assembly

ncbi_organism_name: Porphyromonas cangingivalis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Paenibacillus sp. UMB4589-SE434

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium 1xD42-87


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Prairies Normandes

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: University of Houston


ncbi_country: Ethiopia: Amhara; North Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium diphtheriae HC04

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_organism_name: Anaplasma phagocytophilum

ncbi_submitter: INRA-MIG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Ireland

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_level: Chromosome

ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Helicobacter apodemus


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Undibacterium sp. CCC3.4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis


gtdb_type_species_of_genus: t

ncbi_country: Portugal: at Alcochete

ncbi_isolation_source: solar saltern

ncbi_organism_name: Rhodovibrio salinarum

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_isolation_source: contaminated soil

ncbi_organism_name: Roseisolibacter sp. H3M3-2

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: Colon

ncbi_organism_name: Muribaculum intestinale


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_submitter: Beijing genomics institute


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: stool

ncbi_submitter: University of Washington


ncbi_country: Colombia: Cali

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4103

ncbi_submitter: University Hospital Regensburg


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-4140

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA:Orange County

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Lund University


ncbi_organism_name: Ginsengibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Brazil: Minas Gerais; Furnas Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: Indian Ocean

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Epidulcina cf. delphinae)


ncbi_country: Belgium

ncbi_isolation_source: denitrification reactor

ncbi_organism_name: Brucella anthropi

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC056649

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Aliiroseovarius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Hydrogenophaga sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces zaomyceticus


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin35

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: HIE bin35

ncbi_submitter: Monash University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Sarcina ventriculi

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium fournieri

ncbi_submitter: URMITE


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Yonsei University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: metabat2_coassembly_bwa.715 MAG

ncbi_organism_name: Candidatus Faeciplasma pullistercoris

ncbi_strain_identifiers: metabat2_coassembly_bwa.715 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Faeciplasma;s__Candidatus Faeciplasma pullistercoris


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: China Agricultural University


ncbi_country: South Korea: Ulleung Island

ncbi_organism_name: Actibacterium sp. 188UL27-1

ncbi_submitter: Hannam University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Aalborg University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Catenulispora sp. MAP5-51

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pivers Island (Duke Marine Lab); NC

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponema sp.

ncbi_submitter: INRA


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: goat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Bauldia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Leuconostoc citreum


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfobulbaceae bacterium UBA5604

ncbi_submitter: University of Queensland


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Shimia sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Viet Nam

ncbi_isolation_source: vietnamese human feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Insitute of Biotechlogy


ncbi_country: China: Eimei Mountain

ncbi_organism_name: Streptomyces prasinopilosus

ncbi_submitter: USDA/ARS/NCAUR


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Germany

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA6956

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Coastal water

ncbi_organism_name: Porticoccaceae bacterium UBA6066


ncbi_country: Brazil

ncbi_isolation_source: Homemade Mayonnaise

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India


ncbi_isolate: metabat2_coassembly_bwa.324 MAG

ncbi_organism_name: Ligilactobacillus agilis

ncbi_strain_identifiers: metabat2_coassembly_bwa.324 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Kazakhstan

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_organism_name: Varibaculum massiliense

ncbi_submitter: EMG


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Bacteriovoracaceae bacterium UBA7695


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_isolation_source: Factory

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Kobe University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium seoulense

ncbi_submitter: Uppsala University


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_submitter: Quadram Institute Bioscience


ncbi_assembly_name: freshwater MAG --- A1_bin-724

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Neisseria sp. P0018.S006

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Geitlerinemataceae cyanobacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Vogesella indigofera

ncbi_submitter: Oswego State University of New York


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Sphingobacterium hotanense

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Firmicutes bacterium CAG:95

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:95


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Staphylococcus aureus T16600

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: Flavobacteriales bacterium UBA5939

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6492

ncbi_submitter: Ministry of Science and Technology of China


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Meta

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Porphyromonas gingivalis


ncbi_isolation_source: Pleasant Lake

ncbi_organism_name: beta proteobacterium FWI2

ncbi_submitter: University of Notre Dame


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Indian Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: Kordia sp. TARA_039_SRF

ncbi_submitter: Tara Oceans


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Collinsella sp. UBA4370


ncbi_country: Mali

ncbi_isolation_source: milk fermentation

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: [Eubacterium] sulci


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0311

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Thailand: Mahasarakham

ncbi_isolation_source: lichen tissue from bark of Buchanania latifolia

ncbi_organism_name: Symbioplanes lichenis

ncbi_strain_identifiers: TISTR 2343

ncbi_submitter: Mahasarakham University


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: United Kingdom

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean university of China


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Bacteriology, Graduate School of Medicine, Osaka City University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis NIH05003

ncbi_submitter: NIH-NISC


ncbi_isolation_source: cell culture

ncbi_organism_name: Candidatus Fukatsuia symbiotica

ncbi_submitter: The University of Georgia


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Italy: Casarano

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kiritimatiellia bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: IMG-taxon 2582581260 annotated assembly

ncbi_organism_name: Tissierella praeacuta DSM 18095

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent101

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Alachua

ncbi_submitter: University of Florida


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: soil and water

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: State Key Laboratory of Bioreactor Engineering


ncbi_country: Thailand: Bangkok

ncbi_submitter: JCVI


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_submitter: Swiss Institute of Bioinformatics - Vital-IT group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST228


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Nodularia spumigena CH309

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Marinobacter sp. CHS3-4

ncbi_submitter: Dongguk University


ncbi_country: Netherlands: North Holland

ncbi_isolation_source: water

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: sand

ncbi_organism_name: Sphingosinicella sp. CPCC 101087

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Thailand

ncbi_isolation_source: sputum


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: EMG


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Loc090519-6m_bin-0527

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lishizhenia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_assembly_name: freshwater MAG --- Loc081215-6m_bin-0725


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Russia: Republic of Altai; Mukhor-Tarkhata village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_country: United Kingdom

ncbi_isolation_source: patient with bloody diarrhea (BD)

ncbi_submitter: Health Protection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. H112180540


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Narathiwat

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Czech Republic: Olomouc

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Brucella anthropi

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_isolation_source: Faeces

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Tanzania

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWE2_42_14


ncbi_country: China: Guangdong Province; Dinghushan Biosphere Reserve forest

ncbi_isolation_source: forest soil

ncbi_organism_name: Dyella choica

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Dankook University


ncbi_country: France: APHM

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rhodopila sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Afipia sp. OHSU_I-uncloned

ncbi_submitter: FDA


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium UBA1450


ncbi_country: China: Chengdu

ncbi_isolation_source: liver

ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Australia

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Murdoch University


ncbi_isolation_source: Distal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Egypt

ncbi_isolation_source: infected human

ncbi_organism_name: Rickettsia prowazekii str. Cairo 3

ncbi_strain_identifiers: Cairo 3

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__typhus group;s__Rickettsia prowazekii;x__Rickettsia prowazekii str. Cairo 3


ncbi_organism_name: Actinomadura namibiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Thomasclavelia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Pseudomonas benzenivorans

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Colombia: Pereira

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: China

ncbi_isolation_source: a soil sample

ncbi_organism_name: Pseudomonas sp. 3-2

ncbi_submitter: Northwest Normal University


ncbi_country: Switzerland: Liebefeld

ncbi_isolation_source: Natural whey culture from Gruyere cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: University of Barcelona


ncbi_organism_name: Leptotrichia wadei


ncbi_country: China: Qinghai lake; Qinghai province

ncbi_isolation_source: shallow water sediment

ncbi_organism_name: Flavobacterium salilacus subsp. altitudinum

ncbi_submitter: Zhejiang University


ncbi_country: USA: Seattle

ncbi_isolation_source: blood

ncbi_organism_name: Mycolicibacterium grossiae

ncbi_strain_identifiers: GK

ncbi_submitter: UW


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. MWU13-2517

ncbi_submitter: Midwestern University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas lacunae

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Spain: Leon

ncbi_organism_name: Dermabacter hominis 1368

ncbi_submitter: Bielefeld University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptococcus hyointestinalis

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Xanthomonas axonopodis pv. maculifoliigardeniae

ncbi_strain_identifiers: NCPPB 972

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Candidatus Cardinium hertigii

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;s__Candidatus Cardinium hertigii


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Archangium gephyra

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Nostoc piscinale EBDCYA 7

ncbi_strain_identifiers: EBDCYA 7

ncbi_submitter: NATIONAL INSTITUTE OF BIOTECHNOLOGY(NIB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;s__Nostoc piscinale;x__Nostoc piscinale EBDCYA 7


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: France: Chambery

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Nitrospirota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: Pseudomonas ogarae

ncbi_submitter: LMU Munich


ncbi_country: France

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: 1st assembly

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium UC10237

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: India: Karnataka

ncbi_isolation_source: Human community

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Myroides odoratus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Sorangium sp. So ce260

ncbi_strain_identifiers: So ce260

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce260


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardia fluminea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Edaphobacter aggregans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric corpus Patient479

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P20P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Staphylococcus sp. GDB20D105P


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Indian Ocean: Arabian Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas amylolytica

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Halomonas sp. A020

ncbi_submitter: Molecular Biochemistry, Department of Science and Technology on Food Safety, Faculty of Biology-Oriented Science and Technology, Kindai University


ncbi_country: USA: Cleveland

ncbi_isolation_source: cystic fibrosis isolate

ncbi_submitter: AstraZeneca


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: India

ncbi_isolation_source: intertidal region

ncbi_organism_name: Streptomyces sp. JJ66

ncbi_submitter: CSIR - Central Salt and Marine Chemicals Research Institute


ncbi_country: Brazil: Itatiaia; RJ

ncbi_isolation_source: Atlantic Forest

ncbi_organism_name: Pseudonocardia sp. ICBG1142

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Obesumbacterium proteus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Shewanella algae

ncbi_submitter: Yangzhou University


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardioides fonticola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Colombia: Cundinamarca

ncbi_isolation_source: animal feed; raw chicken carcass at slaughterhouse

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Xiamen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Marinobacter sp. THAF39

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA

ncbi_isolation_source: Plant tissue

ncbi_organism_name: Pseudomonas quasicaspiana


ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Peru: Junin

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Nemotelus nigrinus


ncbi_organism_name: Rhodothermales bacterium


ncbi_country: Iran

ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antioquia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Imperialibacter sp.


ncbi_organism_name: Leptothrix ochracea

ncbi_submitter: University of Delaware


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agromyces bracchium

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_assembly_name: freshwater MAG --- VK_bin-0758

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio natriegens

ncbi_submitter: Shantou University


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Institut Pasteur


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Caballeronia sp. S22

ncbi_submitter: UMR 7156 Laboratoire de Genetique Moleculaire Genomique Microbiologie


ncbi_organism_name: Streptomyces noursei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;x__unclassified Klebsiella pneumoniae complex;s__Klebsiella pneumoniae complex sp. WS2436


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC017556


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Ecuador

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira sp. ZV016

ncbi_submitter: Northern Arizona University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Pacific Ocean: Axial Seamount

ncbi_isolation_source: marine sediment near hydrothermal vents

ncbi_organism_name: Streptomyces spiramenti

ncbi_submitter: Southern Oregon Univeristy


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: India

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Vreelandella boliviensis

ncbi_submitter: Alagappa University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BY8-1LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BY8-1LC


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Mexico: Calakmul

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. KL118A

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Colombia

ncbi_isolation_source: Abdominal abscess

ncbi_organism_name: Staphylococcus aureus DAR5789

ncbi_submitter: Broad Institute


ncbi_country: South Africa:Pretoria

ncbi_isolation_source: gut

ncbi_organism_name: Streptomyces sp. RB17

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Shanghai;Minhang

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: uncultured Leucobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Cixi City; Zhejiang Province

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptomyces malaysiensis


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: USA: Monterey Bay

ncbi_isolation_source: Macrocystis pyrifera

ncbi_organism_name: Rosistilla oblonga

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: Russia: Dagestan

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Mianyang

ncbi_isolation_source: chemical plant soil

ncbi_organism_name: Peiella sedimenti

ncbi_submitter: Nanjing Agriculteral University


ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: IFPEN


ncbi_country: Viet Nam

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Prevotellamassilia sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: USA: Detroit Medical Center

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E4736

ncbi_submitter: HongKong University of Science and Technology


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Nesterenkonia sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Kazan Federal University


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Zhejiang University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Nonomuraea sp. B12E4

ncbi_submitter: Ondokuz Mayis university


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Shewanella algae

ncbi_strain_identifiers: melkephyllucas

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai ocean university


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: root

ncbi_organism_name: Nonomuraea phyllanthi

ncbi_submitter: Faculty of Pharmaceutical Sciences, Chulalongkorn University


ncbi_organism_name: Candidatus Ornithospirochaeta avicola

ncbi_submitter: Quadram Institutte


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-2384

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Irvine

ncbi_isolation_source: culture of Roseovarius sp. TM1035

ncbi_organism_name: Roseovarius sp. AK1035

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Paenibacillus sp. HGH0039

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces griseus subsp. griseus

ncbi_strain_identifiers: NRRL F-2227

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;s__Streptomyces griseus;sb__Streptomyces griseus subsp. griseus


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T39328


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Montreal


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_assembly_name: SLCC98 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: fungal hypha of Mortierella parvispora E1425

ncbi_organism_name: Mycoavidus sp. B2-EB

ncbi_submitter: Ibaraki University College of Agriculture


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3728

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Silvanigrella sp.


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Deinococcus soli (ex Cha et al. 2016)

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus;s__Deinococcus soli (ex Cha et al. 2016)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 318

ncbi_submitter: SC


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Vibrio sp. TRT 2004

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. TRT 2004


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: New Zealand

ncbi_organism_name: Agrobacterium rosae

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: India

ncbi_isolation_source: poultry

ncbi_organism_name: Escherichia coli

ncbi_submitter: GADVASU


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: Q

ncbi_submitter: sichuan university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_country: India: Punjab

ncbi_isolation_source: Vaginal discharge

ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: Saxony

ncbi_isolation_source: contamined soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: TU Bergakademie Freiberg


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: France

ncbi_isolation_source: Pleural liquid

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: jejunum

ncbi_organism_name: Lachnoclostridium phocaeense

ncbi_submitter: Quadram Institutte


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tracheal secretion

ncbi_submitter: University Medical Center Goettingen


ncbi_country: Czech Republic: Chronicare Mund Brno

ncbi_isolation_source: decubitus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Eudoraea sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_country: Russia: Kamchatka; Uzon Caldera

ncbi_isolation_source: thermophilic sediment from neutral hot spring

ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pedobacter cryoconitis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Africanella massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bulleidia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY