ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Canada: Quebec;Champlain Lake

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universite de Montreal


ncbi_assembly_level: Scaffold

ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Ningbo

ncbi_isolation_source: secretion

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


gtdb_representative: t

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter monticola

ncbi_refseq_category: reference genome

ncbi_submitter: Dongguk University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Spain: Sevilla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHU A Coruna


ncbi_country: USA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA


ncbi_country: South Korea

ncbi_isolation_source: Human sputum

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: Korea University


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Tonga: Lau Basin; Tahi Moana

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thiodubiliella;s__Candidatus Thiodubiliella endoseptemdiera


ncbi_isolate: Bradyrhizobium sp. RBC079

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Bradyrhizobium sp.

ncbi_strain_identifiers: Bradyrhizobium sp. RBC079

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: microgreen

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paludisphaera borealis

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M038S1

ncbi_submitter: Universite de Montreal


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFOXYB1_FULL_43_19


ncbi_isolation_source: marine

ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: University of Queensland


ncbi_assembly_level: Chromosome

ncbi_country: Bangladesh: Matlab

ncbi_isolation_source: Human feces

ncbi_submitter: icddr,b


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MO

ncbi_isolation_source: intestine

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Vibrio alginolyticus


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: stream water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: Australia: Melbourne

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: CSIRO Agriculture and Food


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR5609

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: Helmholtz Institute for Pharmaceutical Research Saarland


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Clostridiaceae bacterium UBA4906

ncbi_submitter: University of Queensland


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-427-07_S1_C2

ncbi_submitter: IGS


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: India: Gujarat; Banaskantha; Dantiwada

ncbi_isolation_source: Fecal materials

ncbi_submitter: College of Veterinary Science & A.H., Kamdhenu University,


ncbi_country: South Korea

ncbi_isolation_source: Mukeunji

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Kyunghee University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1532 from squamous cell carcinomas patient MST015

ncbi_organism_name: Staphylococcus epidermidis


ncbi_organism_name: Streptomyces cadmiisoli

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: City University of Hong Kong


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Bradyrhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC101165


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Synechococcus sp. R6-7

ncbi_submitter: University of Montana


ncbi_organism_name: Brevundimonas sp. DC300-4

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Rumen uncultured genome RUG11986

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Eubacterium] siraeum


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Segetibacter sp.

ncbi_submitter: EPFL


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8269

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Cardiobacterium hominis

ncbi_submitter: EMG


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: national institute of biology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-252

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: [Clostridium] asparagiforme DSM 15981

ncbi_submitter: Stanford University


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Alberta

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: leg skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG11270

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG11998

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Flavobacterium sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmiger formicilis


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. RSP15

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Zhenpiania hominis


ncbi_country: China: Zhanjing City; Guangdong Ocean University

ncbi_isolation_source: farmland soil irrigated with seawater

ncbi_organism_name: Rossellomorea vietnamensis

ncbi_submitter: College of Coastal Agricultural Sciences


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: Germany: Rheinbach

ncbi_organism_name: Rhodopseudomonas rhenobacensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Newman HOM

ncbi_submitter: Center for Bioinformatics


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 436

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 436


ncbi_organism_name: Porifericola rhodea

ncbi_submitter: Xiamen University


ncbi_country: Viet Nam

ncbi_isolation_source: black pepper plant rhizosphere

ncbi_organism_name: Bacillus cereus

ncbi_submitter: ENDOBICA


ncbi_isolation_source: lake

ncbi_organism_name: Sphingomonas sp. 37zxx

ncbi_submitter: Applied and enviromental microbiology lab


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia: Zgornja Scavnica

ncbi_isolation_source: apple cider vinegar

ncbi_organism_name: Gluconacetobacter entanii

ncbi_submitter: University of Maribor, Faculty of Natural Sciences and Mathematics


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T28649

ncbi_submitter: Broad Institute


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Paludibacter propionicigenes

ncbi_submitter: University Duisburg-Essen


ncbi_country: Japan

ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: South Africa: Mafikeng

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: North-West University


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: University of Florida


ncbi_organism_name: Mycoavidus cysteinexigens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia: Yekaterinburg

ncbi_isolation_source: patient s blood plasma

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Equimonas faecalis

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Candidatus Equimonas;s__Candidatus Equimonas faecalis


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus sp. FSL H7-0326

ncbi_submitter: Cornell University


ncbi_isolation_source: Ayu

ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: South Korea: Seoul

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Industrial Technology Development Institute


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: college of veterinary medicine


ncbi_organism_name: uncultured Laspinema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Caldilinea sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jiangxi Provincial Center for Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_assembly_name: freshwater MAG --- KT5_bin-602

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: water

ncbi_organism_name: Aeromonas media

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Madrid

ncbi_organism_name: Komagataeibacter medellinensis

ncbi_submitter: CIB-CSIC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Sporosarcina sp. FSL K6-3508

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;x__unclassified Sporosarcina;s__Sporosarcina sp. FSL K6-3508


ncbi_organism_name: Stenotrophomonas sp. AB1(2024)

ncbi_submitter: University of Exeter


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Dialister invisus

ncbi_submitter: SAHMRI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Neorhizobium sp. IRS_2293

ncbi_submitter: The University of Adelaide


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB12-206

ncbi_submitter: Broad Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Cyanobacteria bacterium P01_C01_bin.70

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_C01_bin.70


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 79

ncbi_submitter: SC


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Amycolatopsis sp. NPDC000740

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC006627


ncbi_country: United Kingdom: Scotland; Paisley

ncbi_isolation_source: Milk bottle rinse

ncbi_organism_name: Chryseobacterium lactis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_submitter: Center for Microbial Communities


ncbi_country: China:Gungdong; Shunde first people s hospital

ncbi_isolation_source: wound secretion

ncbi_organism_name: Acinetobacter sp. AB118710

ncbi_submitter: South China Agricultural University


ncbi_country: USA: PA

ncbi_isolation_source: Ileum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


gtdb_type_species_of_genus: t

ncbi_country: China: Zhejiang Province

ncbi_isolation_source: Factory wastewater

ncbi_organism_name: Extensimonas vulgaris

ncbi_submitter: bacteria


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Kenya


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Department of Biosecurity PCL3


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Marinobacterium sp.


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: University of Ottawa


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C887_10

ncbi_submitter: IGS


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bifidobacterium longum D2957

ncbi_submitter: Utah State University


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: China: Shangdong

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Aeromonas sp. Marseille-Q5825

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Streptomyces sp. NPDC012765

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: Broncholaveolar lavage

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_isolation_source: wound

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_submitter: University of Alberta


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Gingival sulcus

ncbi_organism_name: Segatella oris


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_isolation_source: water

ncbi_submitter: Shandong First Medical University


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_strain_identifiers: sigB

ncbi_submitter: UFMG


ncbi_organism_name: Dorea formicigenerans


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Burkholderia sp. SIMBA_051

ncbi_submitter: SIMBA


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Rhodopseudomonas telluris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Copenhagen


ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR53030


ncbi_organism_name: bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Weeksellaceae bacterium


ncbi_organism_name: Lacisediminihabitans sp.

ncbi_submitter: EPFL


ncbi_organism_name: Minisyncoccus archaeiphilus

ncbi_submitter: Microbial Ecology and Technology Research Group  Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Minisyncoccaceae;g__Minisyncoccus;s__Minisyncoccus archaeiphilus


ncbi_organism_name: Candidatus Choladocola sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladocola;x__unclassified Candidatus Choladocola;s__Candidatus Choladocola sp.


ncbi_organism_name: Streptomonospora nanhaiensis

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Shandong

ncbi_isolation_source: anal swab

ncbi_organism_name: Aeromonas simiae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Saudi Arabia

ncbi_isolation_source: Dammam

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nebraska Medical Center


ncbi_submitter: University of Southern California


ncbi_genome_category: derived from single cell

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Dialister sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mexico

ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_submitter: University of Trento


ncbi_organism_name: Orientia tsutsugamushi

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R135;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: WuHan

ncbi_isolation_source: retail market

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Fujian Province

ncbi_isolation_source: The fermentation starter of Baijiu

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Beijing Technology and Business University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides xylanisolvens


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: aquatic

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptococcus canis

ncbi_submitter: FU berlin


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada

ncbi_submitter: Swansea University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_country: USA

ncbi_organism_name: Shigella flexneri

ncbi_submitter: CDC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Sphingobacterium sp. UBA1644


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Germany: Vilsendorf; Bielefeld

ncbi_isolation_source: soil from a small paddock

ncbi_organism_name: Corynebacterium occultum

ncbi_submitter: Uni Bielefeld


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_organism_name: Aeromonas veronii Hm21

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. JMF_07 ED4

ncbi_strain_identifiers: JMF_07 ED4

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Cereibacter sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Queensland


ncbi_country: Chile

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: Israel

ncbi_submitter: Heriot-Watt University


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O25:H4

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Gambia

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: FL; Keys FRRP 1177

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Tenacibaculum sp. Cn5-34

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Tanzania: Zanzibar

ncbi_isolation_source: chicken meat

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC000931

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Fujian

ncbi_isolation_source: healthy tomato plant

ncbi_organism_name: Ralstonia solanacearum FJAT-91

ncbi_submitter: Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, PR China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum FJAT-91


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Hawaii Volcanoes National Park; Hawaii

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella collisarenosi

ncbi_submitter: Complutense University of Madrid


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Kitasatospora cineracea


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_submitter: West African Centre for Cell Biology of Infectious Pathogens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Firmicutes bacterium UBA4557

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4557


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: USA

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii ABNIH16

ncbi_submitter: NISC


ncbi_country: South Korea

ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: Yeungnam University


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: lymphe

ncbi_organism_name: Corynebacterium silvaticum

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA3196


ncbi_assembly_name: freshwater MAG --- MJ4_bin-241

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Guangxi Academy of Medical Science and the People's Hospital Zhuang Autonomous Region


ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Kenya: Lwak

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Univ. of Maryland


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_assembly_name: LM07-01398 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Providencia rustigianii

ncbi_submitter: University of Georgia


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 2685

ncbi_submitter: Ghent University


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Russia: Buryats

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Thailand: Pathumthani

ncbi_isolation_source: whole plant

ncbi_organism_name: Paenibacillus lemnae

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_isolation_source: water

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_assembly_name: Rumen uncultured genome RUG11202

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_V_3

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Hoylesella nanceiensis


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Zhejiang

ncbi_isolation_source: hospital environment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Auburn University


ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus urinalis FB127-CNA-2

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Peru

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA194


ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14079

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: IMG-taxon 2675903137 annotated assembly

ncbi_organism_name: Proteiniclasticum ruminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter sp. SX212

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: China: Zhanjiang

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Actinotalea lenta

ncbi_strain_identifiers: SYSU T00b441

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Shrimps

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: pus aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek feta cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: burned soil

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_submitter: Zhejiang University


ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Holdemanella porci

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_assembly_name: Rumen uncultured genome RUG11158

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Elusimicrobiota bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Saganbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__Candidatus Saganbacteria bacterium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bombilactobacillus bombi

ncbi_submitter: LM-UGent


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-a_bin-040

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Brazil: Minas Gerais

ncbi_submitter: Londrina State University


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. XMU1408

ncbi_submitter: Xiamen University


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Enterobacter cloacae


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: South Korea: Byeonsanbando

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingopyxis sp. BSNA05

ncbi_submitter: Gyeongbuk Institute for Marine Bioindustry(GIMB)


ncbi_country: China: Shenyang

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Biomin Research Center


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Ecuador: Quito

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Washington; Richmond Mine C75

ncbi_isolation_source: biofilm

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallis sp.


ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: University of Lincoln


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Allobaculum sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tongji University


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Kinetoplastidibacterium;s__Candidatus Kinetoplastidibacterium blastocrithidiae;x__Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus MRSA_S4


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: India: Faridabad

ncbi_isolation_source: terrestrial soil from chemical plant

ncbi_organism_name: Streptomyces sp. 130

ncbi_submitter: Microbial Technology Lab, Acharya Narendra Dev College, University of Delhi


ncbi_organism_name: Euzebya sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA

ncbi_isolation_source: spacecraft assembly facility

ncbi_organism_name: Niallia nealsonii

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Fermented sausage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Tenacibaculum vairaonense strain 190115A13a

ncbi_organism_name: Tenacibaculum vairaonense

ncbi_submitter: INRA


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Peru

ncbi_organism_name: Pectobacterium peruviense

ncbi_submitter: Lincoln University


ncbi_isolation_source: Colon

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Lebanon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Nodosilinea sp. E11

ncbi_submitter: Tianjin University


ncbi_organism_name: Cyanobacteria bacterium J06633_8

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06633_8


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: CLC assembly of Escherichia coli C691-71

ncbi_organism_name: Escherichia coli C691-71 (14b)

ncbi_submitter: JCVI


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_organism_name: Ochrobactrum sp. 19YEA23

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: Fermented milk drink

ncbi_organism_name: Lacticaseibacillus casei

ncbi_strain_identifiers: MJA 12

ncbi_submitter: University of Tasmania


ncbi_country: South Korea: Pocheon Province

ncbi_organism_name: Microlunatus panaciterrae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Actinomyces viscosus C505

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Sphingobium sp. Ndbn-10

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: shellfish beds in the Pacific Ocean

ncbi_organism_name: Hyphomonas jannaschiana VP2

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaeroglobus geminatus


ncbi_country: France


ncbi_strain_identifiers: TEF 53

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agama


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_submitter: University of Alberta


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Morganella morganii

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Serratia sp. CY47279

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY47279


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Anaerotruncus rubiinfantis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_submitter: USDA


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Russia: Taman Peninsula

ncbi_isolation_source: terrestrial mud volcano

ncbi_organism_name: Desulfatitalea alkaliphila


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia sp. TW09231

ncbi_submitter: Georgia Institute of Technology, School of Civil and Environmental Engineering


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: Washington

ncbi_isolation_source: endo-cervical swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_country: China: Linyi

ncbi_isolation_source: root endophyte

ncbi_organism_name: Bacillus sp. GbtcB15

ncbi_submitter: Central South University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. GbtcB15


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolate: 3 bin 5

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: 3 bin 5

ncbi_submitter: Duke University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: South Africa: Vandyksdrif; Mpumalanga

ncbi_isolation_source: Root nodules

ncbi_organism_name: Bradyrhizobium xenonodulans

ncbi_submitter: University of Pretoria


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Thailand: Chiangmai

ncbi_isolation_source: soil

ncbi_organism_name: Rhodopseudomonas boonkerdii

ncbi_submitter: Inner Mongolia University


ncbi_country: Singapore

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Italy: Marche; Pesaro-Urbino; Fano

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: IMG-taxon 2593339155 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus ruminis;x__Ligilactobacillus ruminis DSM 20403 = NBRC 102161


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA2960

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: PA

ncbi_isolation_source: porcine pleural cavity


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H25869

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Chicago


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Atlantibacter subterraneus

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: The Centre for Infectious Disease Genomics and One Health, Simon Fraser University


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus iners SPIN 1401G

ncbi_strain_identifiers: SPIN 1401G

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: EMG


ncbi_organism_name: Nocardia niwae NBRC 108934 = DSM 45340

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia niwae;x__Nocardia niwae NBRC 108934 = DSM 45340


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 214

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 4140

ncbi_submitter: University of Calgary


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01409

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01409


ncbi_country: Germany

ncbi_organism_name: Paenibacillus sp. GM2FR

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_submitter: University of Bern


ncbi_organism_name: Campylobacter showae RM3277


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Beef meat

ncbi_organism_name: Leuconostoc gasicomitatum

ncbi_submitter: University of Helsinki


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Medytox


ncbi_organism_name: Streptomyces eurythermus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Alicycliphilus denitrificans

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_country: Togo: Lome

ncbi_isolation_source: pus

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universite de Lome


ncbi_organism_name: Caballeronia sp. LjRoot31

ncbi_submitter: Aarhus University


ncbi_organism_name: Paraburkholderia atlantica

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of South Africa


ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Rhizobium sp. CRRU65

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Levilactobacillus lettrarii

ncbi_submitter: University of Alberta


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loc081215-8m_bin-1649

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Northeastern University


ncbi_country: Thailand

ncbi_isolation_source: peat swamp soil

ncbi_organism_name: Kitasatospora humi

ncbi_submitter: Kasetsart University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Stirling


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: USA: Arizona; Tuscon

ncbi_isolation_source: enriched culture of Chlorella sorokiniana from an outdoor freshwater algae commercial production pond

ncbi_organism_name: Vampirovibrio chlorellavorus

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University