ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: The University of Hong Kong


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Thioalkalivibrio sp. ALJ2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: Tunisia

ncbi_isolation_source: water

ncbi_organism_name: Shewanella sp. 8A

ncbi_submitter: ANSES


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Spain: Valencia; MalvaRosa Beach

ncbi_isolation_source: Marine residues

ncbi_organism_name: Maritalea mediterranea

ncbi_refseq_category: reference genome

ncbi_submitter: Institute for Integrative Systems Biology (University of Valencia-CSIC)

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Chromosome

ncbi_country: Spain

ncbi_isolation_source: Coprolite (A13368)

ncbi_organism_name: Romboutsia sp. 13368

ncbi_submitter: The University of Adelaide


ncbi_country: Denmark

ncbi_isolation_source: wound

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Guangzhou

ncbi_isolation_source: bioaerosols from garbage station

ncbi_organism_name: Microbacterium thalassium

ncbi_submitter: Southern Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTsouthwestern Medical Center


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Apterostigma fungus garden

ncbi_organism_name: Enterobacter sp. Ap-867

ncbi_submitter: UW-Madison


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_country: Iran

ncbi_isolation_source: Petrochemical wastewater

ncbi_organism_name: Stutzerimonas balearica

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolate: wCI-Fem

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wCI-Fem

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: China: JiangXi

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Guangzhou Genedenovo Biotecnology Co.,Ltd


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae AP200

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: China: Shanghai

ncbi_isolation_source: Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: Texas

ncbi_organism_name: Novosphingobium chloroacetimidivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Zymogenaceae bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Candidatus Zymogenia;o__Candidatus Zymogeniales;f__Candidatus Zymogenaceae;x__unclassified Candidatus Zymogenaceae;s__Candidatus Zymogenaceae bacterium


ncbi_organism_name: Roseivirga seohaensis

ncbi_submitter: EMG


ncbi_isolation_source: Industrial wastewater

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: Northumbria University


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aminobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Cambodia

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_assembly_name: Hydrogenedentes bacterium OTU 1

ncbi_genome_category: derived from single cell

ncbi_strain_identifiers: JGI OTU-1

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__Candidatus Hydrogenedens terephthalaticus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__Candidatus Hydrogenedens terephthalaticus;x__Candidatus Hydrogenedens terephthalaticus JGI OTU-1


gtdb_type_species_of_genus: t

ncbi_country: Iceland: Reykjanes peninsula; Isafjardardjup

ncbi_isolation_source: marine intertidal hot spring

ncbi_organism_name: Litorilinea aerophila

ncbi_strain_identifiers: ATCC BAA-2444


ncbi_organism_name: Micromonospora provocatoris

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFOXYC1_FULL_41_36


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Faeces


ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Shaoxing

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: University of Dundee


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. SP1

ncbi_submitter: University Hospital Dresden


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: pig manure

ncbi_organism_name: Knoellia flava TL1

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Blastopirellula sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridioides difficile Y343

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Ruoffia sp. FAM 26255

ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Ruoffia;x__unclassified Ruoffia;s__Ruoffia sp. FAM 26255


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_assembly_name: WGS SGPA1.2

ncbi_organism_name: Streptomyces misionensis JCM 4497

ncbi_submitter: university of strasbourg


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Collinsella sp.


ncbi_assembly_name: Mycobacterium peregrinum

ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_strain_identifiers: CSUR P2098

ncbi_submitter: URMITE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Seville

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Virgen del Rocio


ncbi_isolation_source: San Francisco sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: ChunLab


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Collinsella sp. AK_207A

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Russia: Moscow

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Iowa


ncbi_country: Japan

ncbi_isolation_source: Manure compost

ncbi_organism_name: Tepidanaerobacter sp. GT38

ncbi_submitter: University of Tsukuba


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin26

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: KAP bin26

ncbi_submitter: Monash University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Caccousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Caccousia;x__unclassified Candidatus Caccousia;s__Candidatus Caccousia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_assembly_name: freshwater MAG --- VK2_bin-1130

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Pau University


ncbi_assembly_name: Rumen uncultured genome RUG14494

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: CA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Patescibacteria group bacterium UBA2196

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA2196


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Zhejiang University


ncbi_isolation_source: stool

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_organism_name: Pseudoalteromonas issachenkonii

ncbi_submitter: University of Chicago


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG14328

ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Sphingomonas bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: CSIRO


ncbi_country: China: Zhejiang Province; Huzhou

ncbi_organism_name: Bacillus sp. SYJ

ncbi_strain_identifiers: SYJ

ncbi_submitter: Zhejiang Institute of Freshwater Fisheries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SYJ


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Actinomyces oris

ncbi_submitter: University of Gothenburg - CCUG


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_submitter: university of pennyslvania

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Lautropia dentalis

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Romania: Galati

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: USA: MD

ncbi_isolation_source: alimentary canal (Anthomyiidae sp.)

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: cervix

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Sciensano


ncbi_assembly_name: freshwater MAG --- F14_bin-1208

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Greece: Athens

ncbi_isolation_source: urine

ncbi_submitter: The Unniversity of Queensland


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Parabacteroides merdae


ncbi_country: China: Qinghai

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_isolation_source: Shiraz

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Candidatus Obscuribacteraceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;x__unclassified Candidatus Obscuribacteraceae;s__Candidatus Obscuribacteraceae bacterium


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Photobacterium swingsii

ncbi_submitter: University of Vienna


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Devosia sp.

ncbi_submitter: NIOO KNAW


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Queensland dairy property

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of Calgary


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Longitarsus flavicornis


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 100329

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China:GanSU;Juquan; Loess Plateau

ncbi_isolation_source: Atrophic gastritis

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Lanzhou University Second Hospital


ncbi_country: Turkey

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Soil

ncbi_organism_name: Cupriavidus laharis

ncbi_submitter: LM-UGent


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Atlanta; GA

ncbi_submitter: Emory University


ncbi_organism_name: Bifidobacterium psychraerophilum

ncbi_submitter: Teagasc


ncbi_country: China: Shanghai

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0452

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola sartorii


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC057757

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycoplasma capricolum subsp. capricolum

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capricolum


ncbi_submitter: University of Georgia


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Tunisia: Ksar Ghilane; Sahara Desert

ncbi_isolate: SKG bin10

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: SKG bin10

ncbi_submitter: Monash University


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Balneolia bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;x__unclassified Balneolia;s__Balneolia bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas sp. WS 5532

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Yersinia pestis PY-91

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rock porewater

ncbi_organism_name: Streptomyces sp.

ncbi_submitter: University of Queensland


ncbi_country: Israel

ncbi_isolation_source: mastitis abscess from cow with severe clinical mastitis in two quarters

ncbi_organism_name: Corynebacterium pseudotuberculosis I19

ncbi_submitter: Rede Paraense de Genômica e Proteômica


ncbi_country: India: Uttar Pradesh; Kanpur Nagar; Kanpur

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_assembly_name: genetic mechanisms of environmental adaptability

ncbi_country: China

ncbi_isolation_source: alkali lake soil

ncbi_organism_name: Nocardiopsis valliformis DSM 45023

ncbi_submitter: Yunnan Institute of Microbiology, Yunnan University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolate: Fecal samples

ncbi_isolation_source: phylogroupF

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples;ND;Unknown:H6;F;747 (ST Warwick)

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Xishuangbanna

ncbi_isolation_source: stem of Maytenus austroyunnanensis

ncbi_organism_name: Jiangella alba

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3082

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Blautia sp. Marseille-P2398

ncbi_submitter: URMITE


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.77 MAG

ncbi_isolate: bin.77 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Hyphomonas sp. TMED17

ncbi_strain_identifiers: bin.77 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Drinking water

ncbi_organism_name: Raoultella terrigena


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: ALLERGYFLORA birth-cohort

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: Rickettsiaceae bacterium


ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Marinosulfonomonas sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Streptomyces sp. NPDC000229

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. LR185c

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangzhou

ncbi_isolation_source: airborne dust

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_isolate: AOP1_G1_surf _bin _6

ncbi_organism_name: Marinomonas foliarum

ncbi_strain_identifiers: AOP1_G1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidetes bacterium UBA2359

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA2359


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S26

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: IMG-taxon 2654588202 annotated assembly

ncbi_organism_name: Xylanibacter ruminicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Balneatrix alpica DSM 16621

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: China: Shenzhen

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI


ncbi_country: Armenia

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Segatella copri

ncbi_submitter: University of Chicago


ncbi_country: India: Kottupuri; Kanyakumari; Bay of Bengal coast

ncbi_isolation_source: marine sediment

ncbi_organism_name: Salinivibrio sp. KP-1

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella bivia

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas oryzihabitans


ncbi_country: Canada: Prince Edward Island

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 22838

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Zurich


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Holdemanella porci


ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia sp. ZP32-5

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Iran: Persian Gulf; Khark

ncbi_isolation_source: marine surface water

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: University of Tehran


ncbi_assembly_name: Sphingobium sp Z007 rep A without predator

ncbi_organism_name: Sphingobium sp. Z007

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: EMG


ncbi_organism_name: Coprococcus comes


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Milano

ncbi_isolation_source: Broncho-Alveolar Lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: S.Orsola-Malpighi University Hospital


ncbi_country: China

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Northumbria University


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Shinella zoogloeoides

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Conexibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Streptomyces sp. NPDC050534

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Oswaldo Cruz Institute - Fiocruz


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_submitter: University of Florida


ncbi_organism_name: Micrococcus flavus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA95

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA95

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: CRC AquaDiva


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_strain_identifiers: 36f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_country: USA: IN

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_submitter: EMG


ncbi_organism_name: Pseudoduganella sp.

ncbi_submitter: Guangxi University


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_submitter: the seqafrica consortium


ncbi_country: China: Shandong

ncbi_isolation_source: Farm

ncbi_submitter: Nanjing Agriculture University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2901

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces


ncbi_organism_name: Opitutaceae bacterium TAV4

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Flavobacteriaceae bacterium M23B6Z8

ncbi_submitter: National Marine Biodiversity Institute Of Korea


ncbi_assembly_name: Salmonella enterica CVM 43837 v1.0

ncbi_isolation_source: clinical sample


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: swine salami

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Staphylococcus cohnii


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6795

ncbi_submitter: Chinese University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG12470

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: candidate division WS1 bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__candidate division WS1;x__unclassified candidate division WS1;s__candidate division WS1 bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: Environment

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_organism_name: Bacillus sp. FSL W8-0812

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0812


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Upshore outside the box

ncbi_submitter: University of Basel


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Colorado Anschutz


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: CC

ncbi_submitter: Rajalakshmi Engineering College


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Nonomuraea sp. NPDC052634

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Moorella sp. (in: firmicutes)

ncbi_submitter: The Ohio State University


ncbi_country: USA: Washington; University Place

ncbi_isolation_source: One-stage PNA wastewater reactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Washington


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: Texas A & M University


ncbi_isolation_source: Marine

ncbi_organism_name: Francisella adeliensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: ASCENSION


ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: uncultured MS024-2A Flavobacteriaceae SW04_Bin3

ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: iBB-IST


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Australia: Queensland

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: San Francisco sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis DSM 20451

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Bradyrhizobium elkanii USDA 61

ncbi_strain_identifiers: USDA 61

ncbi_submitter: Kyoto Sangyo University


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Sassari

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Viet Nam

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces sp. NBRC 14336

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Polynucleobacter necessarius

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA7836

ncbi_submitter: University of Queensland


ncbi_country: Japan: Tokyo

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Toho University School of Medicine


ncbi_country: New Zealand

ncbi_isolation_source: potato tubers

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Candidatus Symbiopectobacterium sp. NZEC127


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NILS78:B2;STp 1;STw 95;Urine;O1:H7

ncbi_submitter: UMR 1137 IAME


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean:Takuyo-Daigo Seamount

ncbi_isolation_source: ferromanganese crust

ncbi_organism_name: bacterium MnTg04

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universite Paris Sud


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: part of plant

ncbi_organism_name: Streptomyces scabiei

ncbi_strain_identifiers: LBUM 1479

ncbi_submitter: Universite de Moncton


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-1005

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-99

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: USA

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 4

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Qinghai Province; Yushu; Hoh Xil

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Georgenia yuyongxinii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Portugal

ncbi_isolation_source: Ascitic fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Streptomyces sp. NPDC005568

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Argentina: Lake Nahuel Huapi

ncbi_isolation_source: freshwater

ncbi_organism_name: Cyanobium sp. N.Huapi 1H5

ncbi_strain_identifiers: N.Huapi 1H5

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Fujian

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_strain_identifiers: FuJ

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pneumoniae PNI0010

ncbi_submitter: Washington University


ncbi_country: Estonia: Tartu

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: SCAID WND1-2019

ncbi_submitter: SCAID


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: IMG-taxon 2721755862 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWB16

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Ruminococcaceae bacterium HV4-5-B5C

ncbi_submitter: Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) de la Universitat de Valencia


ncbi_assembly_name: freshwater MAG --- AM_bin-1055

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS AMP-14

ncbi_isolation_source: activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SZAS AMP-14

ncbi_submitter: The University Hong Kong


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_assembly_name: Salmonella enterica CVM N51314 v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_isolation_source: Richmond Mine C75 location

ncbi_organism_name: Nitrospirae bacterium UBA7871

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium UBA7871


ncbi_organism_name: Alistipes putredinis


ncbi_country: China: Neijiang; Sichuan Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Cytobacillus sp. NJ13

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: France: Caen

ncbi_organism_name: Enterococcus faecium EnGen0315

ncbi_submitter: Broad Institute


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Lebanese American university


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0593


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Streptomyces sp. NPDC005246

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_country: USA: Oak Ridge National Lab East Fork Poplar Creek (EFPC) study site

ncbi_isolation_source: sediment from a natural stream that has been contaminated with Hg from upstream sources

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWC1_38_13


ncbi_organism_name: Devosia sp. XK-2

ncbi_submitter: Dalian University of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Anaerococcus hydrogenalis

ncbi_submitter: University of California, Berkeley


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_country: Greece

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Texas

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ralstonia sp. JGI 0001001-B07


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA886

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA886


ncbi_organism_name: bacterium D16-36


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Methyloceanibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Enterococcus faecalis ATCC 4200

ncbi_strain_identifiers: ATCC 4200

ncbi_submitter: Broad Institute


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Rikenellaceae bacterium DTU001

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_strain_identifiers: GBK 16

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Isangi


ncbi_isolation_source: Caecum


ncbi_organism_name: Granulicatella elegans


ncbi_country: Russia

ncbi_organism_name: Yersinia pestis

ncbi_submitter: RARI


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Butyricicoccus sp. TM10-16AC

ncbi_submitter: BGI


ncbi_country: Spain: Las Palmas

ncbi_organism_name: Mycolicibacterium canariasense

ncbi_submitter: University of Trento


ncbi_country: Italy: Brescia

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Duganella sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Arthrobacter sp. AZCC_0090

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: spleen

ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: Sichuan Agricultural University,Sichuan, P.R. China


ncbi_assembly_name: freshwater MAG --- KT3_bin-530

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: India: Leh

ncbi_isolation_source: Indus river sediment

ncbi_organism_name: Streptomyces sp. MNU76

ncbi_submitter: Institute of Genomics and Integrative Biology


ncbi_country: Panama: Cristobal

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenella sp. UBA2853

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: LT2 KO STM3605

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: NY

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_isolation_source: marine

ncbi_organism_name: Oceanospirillales bacterium


ncbi_country: Australia

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Menzies School of Health Research


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1546444

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0021

ncbi_submitter: Broad Institute


ncbi_country: China: Binhai; Tianjin

ncbi_isolation_source: saline alkaline soil

ncbi_organism_name: Kocuria sp. WN036

ncbi_submitter: Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: AAFC


ncbi_country: Pakistan

ncbi_isolation_source: rice rhizospheric soil

ncbi_organism_name: Streptomyces globisporus

ncbi_strain_identifiers: M 1

ncbi_submitter: NIBGE


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-426-E17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Ligilactobacillus acidipiscis

ncbi_submitter: University of Lausanne


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Gemmatales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Plantibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Thiothrix sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Archangium sp.

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Owenweeksia sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Escherichia coli H386

ncbi_submitter: Broad Institute


ncbi_country: Germany: Freising

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. UA303


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. O-M53

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_country: Lebanon: Harissa; Kesrouwane

ncbi_isolation_source: soil sample from Harissa region in Lebanon

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Saint Joseph University of Beirut


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_organism_name: Blastomonas fulva

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhengzhou University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolate: AOP1_A1_surf _bin _9

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP1_A1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Streptococcus pneumoniae GA41317

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Dairy Fermentation

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: France: Arcueil

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Qujing Normal University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Clostridium beijerinckii NCIMB 8052

ncbi_strain_identifiers: NCIMB 8052

ncbi_submitter: US DOE Joint Genome Institute


ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR204

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0352R

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidovorax temperans


ncbi_country: USA: Madison; Wisconsin

ncbi_isolation_source: nasal lavage fluid

ncbi_organism_name: Rothia sp. RSM386

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. RSM386


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Butyribacter intestini

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Mycobacterium tuberculosis SUMu009


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water from culvert

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Hunan

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces paludis

ncbi_submitter: Hunan University of Science and Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Lysogeny broth

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Antarctica: Gourlay Peninsula

ncbi_organism_name: Flavobacterium sp. GP15

ncbi_submitter: International Medical University, IMU


ncbi_isolation_source: termite gut

ncbi_organism_name: Enterococcus termitis

ncbi_submitter: CDC


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Meatballs; FP

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil of a botanical garden

ncbi_organism_name: Piscinibacter terrae

ncbi_submitter: Chung Ang University


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wayne State University


ncbi_submitter: University of Copenhagen


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human gut

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.


ncbi_country: Mexico

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Denmark

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_isolation_source: PET

ncbi_organism_name: Chryseobacterium sp. PET-29

ncbi_submitter: Nanjing Normal University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Helicobacter ganmani


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: France: Besancon

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_submitter: Paris Saclay University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: Carrots

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Max Rubner-Institut


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cobetia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Pakistan: Bin Qasim Town

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Nitratireductor sp.

ncbi_submitter: EMG


ncbi_organism_name: Peptoniphilus raoultii

ncbi_submitter: URMITE


ncbi_organism_name: Rhizobium lentis

ncbi_strain_identifiers: SEMIA 4033

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T36127

ncbi_submitter: Broad Institute


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: New York

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urban river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Cysteiniphilum sp. 19S12-1

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Chinese Medicine


ncbi_organism_name: uncultured Castellaniella sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Rhizobium sp. GCM10022189

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Candidatus Caccovivens sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Caccovivens;x__unclassified Candidatus Caccovivens;s__Candidatus Caccovivens sp.


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: University of Georgia


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Canada: Montreal

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium sp. SL42

ncbi_submitter: McGill University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Anaeromyxobacter sp.


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Bdellovibrio sp. BCCA

ncbi_strain_identifiers: BCCA

ncbi_submitter: University of Guelph


ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University