ncbi_organism_name: Enterobacter pasteurii

ncbi_submitter: Institut Pasteur


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: France: Tours; Departmental veterinary laboratory

ncbi_genome_representation: full

ncbi_isolation_source: Rabbit; lung

ncbi_organism_name: Neisseria leonii


ncbi_assembly_level: Contig

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptobacillus ratti

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolate: AOP30_B2_surf _bin _15

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: AOP30_B2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Agreia sp.

ncbi_submitter: The John Innes Centre


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Enterococcus sp. AZ035

ncbi_submitter: Broad Institute


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Sodalis sp. RH23

ncbi_submitter: Penn State University College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. RH23


ncbi_organism_name: Xanthomonas hortorum ATCC 19865

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas hortorum;x__Xanthomonas hortorum pv. gardneri;x__Xanthomonas hortorum ATCC 19865


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Shewanella sp. HL-SH5

ncbi_submitter: Seoul National University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_submitter: Institut Pasteur de Dakar


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacillales bacterium UBA2753

ncbi_submitter: University of Queensland


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_assembly_level: Chromosome

ncbi_country: France: Brest

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Viet Nam: Ben Tre

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_submitter: Seoul National University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Russia

ncbi_organism_name: Chlamydophila parapsittaci

ncbi_submitter: Federal Research Center of Virology and Microbiology, Branch in Saratov

ncbi_type_material_designation: assembly from type material


ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Arthromitus sp. SFB-2

ncbi_submitter: Stanford University, Relman Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-2


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: patient environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: sediments

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_refseq_category: reference genome

ncbi_submitter: Cardiff University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia ubonensis;sb__Burkholderia ubonensis subsp. mesacidophila


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: foregut

ncbi_organism_name: Epulopiscium sp. Nele67-Bin005

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__unclassified Candidatus Epulonipiscium;s__Epulopiscium sp. Nele67-Bin005


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Psychrobacter sp. KCTC 72983

ncbi_submitter: Ajou University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Arcicella sp. BE140

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Guangdong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria sp. HKCCD8929

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Atlantic Ocean: Scotia Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Halomonas profundus

ncbi_submitter: First Institute of Oceanography


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: roots of wheat

ncbi_organism_name: Azospirillum lipoferum

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacteroides sp. 2_1_33B

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Human feces

ncbi_organism_name: Lactococcus sp. LG1074

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 942194

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_country: Russia: Bargusin valley; Baikal Region

ncbi_isolation_source: sediment from Garga hot spring located in the valley of the river Barguzin (the Baikal region)

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: THE INSTITUTE OF CYTOLOGY AND GENETICS


ncbi_organism_name: Lonepinella sp. BR2882

ncbi_submitter: The University of Queensland


ncbi_country: China: Jinhua

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Methylobacterium organophilum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV192

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: Prevotella ihuae

ncbi_organism_name: Prevotella ihumii

ncbi_submitter: URMITE


ncbi_assembly_name: IMG-taxon 2636416022 annotated assembly

ncbi_organism_name: Chitinophaga niabensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Environmental; Albuterol Inhaler

ncbi_organism_name: Burkholderia stabilis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Italy: Molise; Isernia; Carovili

ncbi_isolation_source: spleen; lymph nodes

ncbi_organism_name: Brucella abortus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Ignavibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0390R

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli KTE228


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Pseudescherichia vulneris

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: NC

ncbi_isolation_source: Plant; Wheat

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Stappia sp. MMSF_3263

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA3184

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA3184


ncbi_organism_name: Salmonella sp. M281

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chromatiaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC057271

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolate: AOP40_8SA_coeur _bin _5

ncbi_organism_name: Bifidobacterium mongoliense

ncbi_strain_identifiers: AOP40_8SA_coeur _bin _5

ncbi_submitter: Genoscope


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France

ncbi_isolation_source: Cheese

ncbi_organism_name: Psychrobacter sp. PG1

ncbi_submitter: INRA


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: HeBei

ncbi_isolation_source: blood

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Italy

ncbi_isolation_source: swine frankfurter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Shinella sp.


ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China agricultural university


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: France: Provence-Alpes-Cote d Azur; Chateaurenard

ncbi_isolation_source: bulk soil

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aureofaciens


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-06805

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Cecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University College Cork


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardia sp. NPDC023733

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: caecum

ncbi_organism_name: Parabacteroides sp. An277

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Acinetobacter sp.


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B056;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-101

ncbi_organism_name: uncultured bacterium


ncbi_country: Australia: Newcastle

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Sangju

ncbi_isolation_source: Makgeolli (Korean traditional alcoholic beverage)

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: Greenland: Baffin Bay

ncbi_isolation_source: surface marine sediments

ncbi_organism_name: Candidatus Izemoplasma acidinucleici

ncbi_submitter: University of Vienna

ncbi_taxonomy: d__Bacteria;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;s__Candidatus Izemoplasma acidinucleici

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;s__Candidatus Izemoplasma acidinucleici


ncbi_country: USA: Evanston; Illinois

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Distal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Australia

ncbi_submitter: Microbiological Diagnostic Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Tehcnology, Sydney


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH12061

ncbi_submitter: South China Agricultural University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: saliva

ncbi_organism_name: TM7 phylum sp. oral taxon 352

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__TM7 phylum sp. oral taxon 352


ncbi_assembly_name: Campylobacter jejuni CVM 41905 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41905

ncbi_submitter: FDA/CVM


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Swab sample of hospital environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-203

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobium sp. DMF-1

ncbi_submitter: dalian university of technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Gangwon province Institute of Health & Environment


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_isolation_source: microbial mat

ncbi_submitter: University of Liege

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Gloeobacterales;x__Gloeobacterales incertae sedis;g__Candidatus Sivonenia;s__Candidatus Sivonenia alaskensis;x__Candidatus Sivonenia alaskensis PMM_0042


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: ICONIC


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_strain_identifiers: Langkawi

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Lai;x__Leptospira interrogans serovar Lai str. Langkawi


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_country: Ecuador: Borbon

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Russia: Sakhalin island

ncbi_isolation_source: plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_strain_identifiers: VKM Ac-1790

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: AR

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: The Beibu Gulf

ncbi_organism_name: Aliikangiella coralliicola

ncbi_submitter: Guangxi University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Yersinia bercovieri

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Turicimonas muris


ncbi_country: China

ncbi_organism_name: Sinorhizobium sojae CCBAU 05684

ncbi_strain_identifiers: CCBAU 05684

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Netherlands: Pieterburen

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter blaseri

ncbi_submitter: Utrecht University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_strain_identifiers: Duyster-Boelhouwer

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Grippotyphosa;x__Leptospira kirschneri serovar Grippotyphosa str. Duyster-Boelhouwer


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus cereus group sp. BceL054

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL054


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium D16-34

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Germany: Munich

ncbi_isolation_source: 1-methylnaphthalene degrading enrichment culture

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_organism_name: Salmonella sp. NW1072

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_organism_name: Listeria innocua

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Douglas Channel

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: National Research Council Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Phycisphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: broodstock

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: China: JiangSu

ncbi_isolation_source: Perithecium

ncbi_organism_name: Pantoea agglomerans


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Allobaculum sp.


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: uncultured Oligoflexia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pavia


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: MI


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Ethiopia: Tigray; West Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm from a PVC pipe found in the sewage

ncbi_organism_name: Leptospira levettii

ncbi_submitter: Federal University of Bahia


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: SC


ncbi_country: France: Guebwiller; Alsace

ncbi_organism_name: Borreliella garinii IPT89

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED13

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED13


ncbi_country: China: Kunming

ncbi_isolation_source: environmental swabs

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_assembly_name: Rumen uncultured genome RUG514

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0814

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: sputum

ncbi_organism_name: Rothia aeria

ncbi_submitter: University of Malaya


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Turkey

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: USAMRIID


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Streptococcus sp. UBA632

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: Bacteroidetes sp. RBC076

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_strain_identifiers: Bacteroidetes sp. RBC076

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Corynebacterium durum

ncbi_submitter: EMG


ncbi_organism_name: Pseudoalteromonas sp. CO302Y

ncbi_submitter: INDICASAT AIP


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Cepheid


ncbi_country: Portugal

ncbi_isolation_source: homemade compost

ncbi_organism_name: Microbacterium invictum

ncbi_submitter: Xiamen University


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas vesicatoria

ncbi_strain_identifiers: Xcv DC 97 T18A

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Germany

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: France: Ivry

ncbi_isolation_source: Rotting Plant Stem

ncbi_organism_name: Pantoea nemavictus


ncbi_isolation_source: burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Canada: Edmonton; Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: the South China Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Rubrobacter tropicus

ncbi_strain_identifiers: SCSIO 52909

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tianjin Centers for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Ja_bin-0342

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus;x__unclassified Haemophilus;s__Haemophilus sp. oral taxon 851;x__Haemophilus sp. oral taxon 851 str. F0397


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0064

ncbi_submitter: Broad Institute


ncbi_organism_name: Actinoalloteichus caeruleus DSM 43889

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: Boston

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_submitter: JCVI


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCBD17_035

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre pasteur du Cameroun


ncbi_isolation_source: river

ncbi_submitter: College of Veterinary Medicine,Northwest A&F University


ncbi_country: China: Shanghai

ncbi_isolation_source: soil

ncbi_strain_identifiers: LZ

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae LZ


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: USA: FL

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Parvicella sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_submitter: Christian Medical College


ncbi_country: Australia: Victoria

ncbi_isolation_source: modified atmosphere packaged beef

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: CSIRO Agriculture and Food; Food Safety and Stability Group


ncbi_country: Peru:Chota; San Juan de Licupis; Pay Pay

ncbi_organism_name: Yersinia pestis PY-05

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Luteibacter jiangsuensis

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: 57357 Hospital


ncbi_organism_name: Salmonella sp. NW1025

ncbi_submitter: Sichuan University


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Microbacterium sp. OR21

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC057094

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Coprothermobacterota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Spirochaetia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Duncaniella muris


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Allomuricauda sp. UBA7809

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Shewanella colwelliana

ncbi_strain_identifiers: ATCC BAA-642

ncbi_submitter: Toho University


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM N38855-SQ v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb008

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0414R

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Staphylococcus aureus VET0107R


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Thermotoga sp. RQ2

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: Spain: Porto Cristo; Mallorca

ncbi_organism_name: Streptomyces prasinopilosus

ncbi_strain_identifiers: NRRL B-2711

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: Prochlorococcus sp. AG-321-D23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Taiwan

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter japonicus


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12177

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 20 to 25cm

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Bulgaria: Rupi basin

ncbi_organism_name: Anoxybacteroides rupiense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Parabacteroides merdae


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: University of Tennessee


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Shangdong

ncbi_isolation_source: pork from market

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H38215

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Loc090907-4m_bin-524

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Canada

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-8093

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Denmark

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cereus group sp. BCN63

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN63


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: uncultured Polynucleobacter sp.


ncbi_organism_name: Verrucomicrobiaceae bacterium


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: LXM

ncbi_submitter: Enze Hospital


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 249

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 249

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP30_B2_surf _bin _19

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP30_B2_surf _bin _19

ncbi_submitter: Genoscope


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: rabbit gut


ncbi_submitter: EPFL


ncbi_country: China: Inner Mongolia Autonomous Region

ncbi_organism_name: Pseudomonas amygdali pv. lachrymans

ncbi_submitter: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. lachrymans


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: China: Shanghai

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. LJBS06

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LJBS06


ncbi_country: Guam: Luminao Reef Flat

ncbi_isolation_source: coral mucus

ncbi_organism_name: Saccharicrinis sp. UBA6048

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rappini

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: TX

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: Lab enrichment

ncbi_organism_name: Cellulomonas iranensis

ncbi_submitter: UW-Madison


ncbi_assembly_name: freshwater MAG --- MJ120730A_bin-506

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: USA

ncbi_isolation_source: Urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Lamb

ncbi_organism_name: Clostridium tagluense

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Mycobacterium noviomagense

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Cold-smoked tuna

ncbi_organism_name: Morganella psychrotolerans

ncbi_strain_identifiers: CCUG 53682T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Portugal: Lagoa das Braas; Quiaios

ncbi_isolation_source: pond; water sample

ncbi_organism_name: Microcystis aeruginosa LEGE 91341

ncbi_submitter: CIIMAR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides eggerthii


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: bacterium

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: turkey

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Croceibacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: feces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5405

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5405


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


gtdb_type_species_of_genus: t

ncbi_organism_name: Oryzobacter terrae

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: ACI 51

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Tepidamorphus gemmatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: DOE JGI


ncbi_country: United Kingdom: Glasgow

ncbi_isolation_source: Laboratory mosquito line (Malaysian nuclear background)

ncbi_organism_name: Wolbachia endosymbiont of Aedes albopictus

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Sodalis sp. (in: enterobacteria)

ncbi_submitter: Free University of Bozen-Bolzano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. (in: enterobacteria)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: NH

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Dartmouth College


ncbi_organism_name: Bacteroidales bacterium


ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: China: Huainan

ncbi_isolation_source: coal samples cultured in anaerobic conditions in minimal salts plus yeast media

ncbi_organism_name: Staphylococcaceae bacterium

ncbi_submitter: Anhui University of Science & Technology


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parolsenella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agriculture university


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Shaoguang

ncbi_organism_name: Myxococcus sp. RHSTA-1-4

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Amycolatopsis tolypomycina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG12084

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Bohai strait

ncbi_isolation_source: marine sediment

ncbi_organism_name: Shewanella indica

ncbi_submitter: Yantai Institute of coastal zone research (CAS)


ncbi_assembly_name: freshwater MAG --- Ja2_bin-1211

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 12 (4-7653042)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 12 (4-7653042)


ncbi_country: Spain: Santander

ncbi_isolation_source: skin ulcer

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Veterinary Immunology Group and Animal Production, University Institute of Animal Health


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces anulatus


ncbi_organism_name: Collinsella sp. HCP3S3_E11

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Barnesiella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Haemophilus parainfluenzae


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_assembly_name: freshwater MAG --- LinL3_bin-0015

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG11183

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Stenomitos sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes HL097PA1

ncbi_submitter: WUGSC


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pretoria


ncbi_isolate: aBbif

ncbi_organism_name: Arsenophonus apicola

ncbi_strain_identifiers: aBbif

ncbi_submitter: University of Liverpool


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Amycolatopsis sp. 505

ncbi_submitter: Prince of Songkla University (Surathani campus)


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Mushroom Spring; Yellowstone National Park; Wyoming

ncbi_isolation_source: alkaline siliceous hot spring microbial mat

ncbi_organism_name: Chloracidobacterium sp. S

ncbi_strain_identifiers: S

ncbi_submitter: Tokyo Metropolitan University


ncbi_country: USA: Ohio

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Colorado Anschutz


ncbi_assembly_name: IMG-taxon 2708742463 annotated assembly

ncbi_organism_name: Chryseobacterium sp. RU37D

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcaceae bacterium UBA7080

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinigallinarum


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: University Duisburg-Essen


ncbi_country: France: Limoges

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC078A12

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10522

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand: Uthai Thani

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Faculty of Fisheries, Kasetsart University


ncbi_country: India: Mahatma Gandhi Hospital - Casualty

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0029

ncbi_submitter: Broad Institute


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Candidatus Olsenella avistercoris


ncbi_assembly_name: freshwater MAG --- VK3_bin-0444

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: BILS


ncbi_country: Portugal: The Azores

ncbi_isolation_source: geothermal water

ncbi_strain_identifiers: Fdl

ncbi_submitter: University of Bergen

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Southwest University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Succinivibrio sp.


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia

ncbi_organism_name: Sinorhizobium meliloti RRl128

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF26-10BH

ncbi_submitter: BGI


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Czech Republic: Praha

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Uzbekistan: Kyzylkum desert

ncbi_isolation_source: salt crust on the soil surface

ncbi_organism_name: Modestobacter sp. VKM Ac-2984

ncbi_strain_identifiers: VKM Ac-2984

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Roseateles sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pedobacter foliorum

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_isolation_source: water

ncbi_organism_name: Burkholderia humptydooensis MSMB43

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea iniqua

ncbi_submitter: LM-UGent


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: EPFL


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21340


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Utrecht University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gaetbulibacter sp. M240

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Sphingosinicella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas tolaasii

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: EMG


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus pyogenes ABC020014764

ncbi_submitter: Broad Institute


ncbi_isolation_source: Mustard

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Throat swab 40

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_strain_identifiers: IPCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Malaysia: Perak

ncbi_isolation_source: soil sample from oil palm plantation

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: Universiti Malaya


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonas aeruginosa HB13

ncbi_submitter: University of Minho


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Metamycoplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: AOP1_H1_surf _bin _11

ncbi_organism_name: Marinobacter sp.

ncbi_strain_identifiers: AOP1_H1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Rhodothermus marinus JCM 9785

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;f__Rhodothermaceae;g__Rhodothermus;s__Rhodothermus marinus;x__Rhodothermus marinus JCM 9785


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lawsonella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: human gut


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Germany: Munich

ncbi_isolation_source: thermophilic industrial scale biogas plant

ncbi_organism_name: Acetivibrio saccincola

ncbi_submitter: Bielefeld University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_isolation_source: Hip Secretion

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: sediment

ncbi_organism_name: Calycomorphotria hydatis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_country: Kenya: Nyanza Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Xanthomonas arboricola pv. fragariae

ncbi_submitter: JLU


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Roseburia sp. CAG:309

ncbi_submitter: DTU


ncbi_organism_name: Gardnerella vaginalis 6119V5

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute