ncbi_country: Japan: Owase

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium kishitanii

ncbi_submitter: California Academy of Sciences


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Germany: Braunschweig

ncbi_genome_representation: full

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_organism_name: Agrobacterium sp. B133/95

ncbi_submitter: Oregon State University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: Farnham; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-035

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China

ncbi_isolation_source: drainage liquid

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: RESIDENTIAL AGED CARE FACILITY

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of South Australia


ncbi_isolation_source: stool

ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: forest soil

ncbi_organism_name: Brevibacillus daliensis

ncbi_refseq_category: reference genome

ncbi_submitter: Yunnan Institute of Microbiology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_submitter: Nimes University Hospital


ncbi_country: USA: Oregon; Netarts Bay

ncbi_isolation_source: estuarine bay

ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: Oregon State University


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_organism_name: Shigella boydii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: chlorinated drinking water; site 2

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. Wh19

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;s__Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_45_17


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Academy of Military Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Polaromonas hydrogenivorans

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: MPI for marine Microbiology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Pleionea sp.

ncbi_submitter: National University of Singapore


ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Sporosarcina sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_level: Chromosome

ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin; prosthetic joint infection

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Methylobacterium sp. GC_Met_1

ncbi_submitter: Agriculture Victoria


ncbi_country: South Korea

ncbi_organism_name: Luteibacter aegosomatissinici

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Vibrio gigantis

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: SAHMRI


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ST_Warwick 95;TTBI13;ST_Pasteur 1

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged pork

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Silver Spring

ncbi_isolation_source: FDA Carlson Lab

ncbi_organism_name: Ruminococcus albus 8

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0177R

ncbi_submitter: Broad Institute


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany: North Sea

ncbi_organism_name: Arcanobacterium pinnipediorum

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Microlunatus lacustris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


gtdb_type_species_of_genus: t

ncbi_organism_name: Dickeya chrysanthemi NCPPB 402

ncbi_strain_identifiers: NCPPB 402

ncbi_submitter: James Hutton Institute


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: control oxisol soil plot 7

ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Arizona State University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Caldimicrobium thiodismutans

ncbi_submitter: Microbial Ecology Group, Institution of Low Temperature Science, Hokkaido University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptomyces niveus NCIMB 11891

ncbi_strain_identifiers: NCIMB 11891

ncbi_submitter: GenBioCom

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_country: China: Jiangsu

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Bacteroides uniformis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: USA:New York City

ncbi_isolation_source: cloth

ncbi_organism_name: Acinetobacter sp. UBA4611

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: respiratory

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Human feces

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: stool

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Cepheid


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: Australia

ncbi_isolate: Faeces

ncbi_isolation_source: phylogroupE

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus HOAG6005

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Bern


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Chlamydia pecorum


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Harbin

ncbi_isolation_source: maize rhizosphere soil

ncbi_organism_name: Streptomyces sp. NEAU-sy36

ncbi_submitter: college of life science


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter sp. EC-NT1

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: University of Foggia


ncbi_organism_name: Psychrobacillus psychrodurans

ncbi_submitter: McGill University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Shandong University


ncbi_organism_name: Streptomyces sp. NPDC057099

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Bath


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-1065

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Microbacterium sp.


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: India: Gujarat

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus SAFR-032

ncbi_submitter: BGI


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Enterousia merdequi

ncbi_submitter: Quadram Institute

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__;f__;g__Candidatus Enterousia;s__Candidatus Enterousia merdequi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;s__Candidatus Enterousia merdequi


ncbi_organism_name: Streptomyces sp. NPDC087658

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: Technische Universitaet Muenchen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: Rumen uncultured genome RUG13443

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Neisseria blantyrii

ncbi_submitter: University of Oxford


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_assembly_name: Bosea sp. 100-5

ncbi_isolation_source: Sludge ENVO:00002044

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_submitter: SINTEF Industry


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Chlorogloea sp. CCALA 695

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Acinetobacter sp. KS-LM10

ncbi_submitter: Kunsan National University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Nizhny Novgorod

ncbi_isolation_source: urogenital tract of women with infectious-inflammatory diseases of the reproductive organs

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Blokhina Research Institute of Epidemiology and Microbiology, Nizhny Novgorod, Russia


ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemania filiformis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Hydrogenimonas sp.

ncbi_submitter: Harvard University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Alicyclobacillus fodiniaquatilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Singapore

ncbi_isolation_source: Farm water farm 5

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brunei


ncbi_organism_name: Streptomyces sp. NPDC091416

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Lund University


ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: Ngtc NS 31

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Dyadobacter sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Chicago


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: bed

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: poultry meat

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Switzerland

ncbi_isolation_source: corn

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: Blister

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_country: Cambodia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_isolation_source: gloves

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Tokyo Medical And Dental University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: caecum

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Wageningen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0531

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC001546

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11206

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Minnesota


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_organism_name: Propionicimonas sp.


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Enterobacter ludwigii


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: USDA ARS


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R961;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sample CTD10 from hydrothermal plume and surrounding marine water

ncbi_organism_name: SAR324 cluster bacterium SAR324-CTD10

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium SAR324-CTD10


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Rikenella faecigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: Loyola University Chicago


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: PCBs contaminated soil

ncbi_organism_name: Rhodococcus sp. WB1

ncbi_submitter: Zhejiang Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. WB1


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- I2_bin-038

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Francisellaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_organism_name: Clostridium tertium

ncbi_submitter: Icahn School of Medicine


ncbi_country: Hong Kong: Repulse Bay

ncbi_isolation_source: Urban soil

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: China: Futian

ncbi_submitter: South China Agricultural University


ncbi_strain_identifiers: ABKWV

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Atopobiaceae bacterium AF91-08IFCA

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas duriflava

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Paenibacillus sp. PvP094


ncbi_organism_name: Tropheryma whipplei str. Endo32

ncbi_submitter: ebi


ncbi_organism_name: Acinetobacter lwoffii


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: India: Ahmadabad

ncbi_isolation_source: Anode region of constructed wetland-microbial fuel cell

ncbi_organism_name: Niallia circulans

ncbi_submitter: Charotar University of Science & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Tomato supreme (pastereurised in can)

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: University of Groningen


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Nova Scotia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: IA

ncbi_isolation_source: avian small intestine (Meleagris sp.)


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D6_bin-340

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: Japan:Shizuoka; Shizuoka

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: SZ1;orthopedic surgical site of a patient's back

ncbi_submitter: Keio University


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mannheimia haemolytica

ncbi_strain_identifiers: 2683MH;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Pectobacterium aroidearum

ncbi_strain_identifiers: NCPPB 929

ncbi_submitter: University of Exeter


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Flavitalea sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Saudi Arabia

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ethiopia: Oromiya; S/W/Shewa; Illu

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Italy: Foggia

ncbi_isolation_source: Nero di Troia red wine (vintage 2007) undergoing spontaneous MLF and collected from three different vinifications performed in the same winery

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: University of Foggia


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Acidipila sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: saltern

ncbi_isolation_source: water

ncbi_organism_name: Rhodohalobacter halophilus

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: Russia: White Sea coast

ncbi_isolation_source: microbial mat communities of an estuary of the Nilma river

ncbi_organism_name: Thiorhodococcus mannitoliphagus

ncbi_submitter: Bellevue University


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: cutaneous leg ulcer

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Indiana University School of Medicine


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Tur-6

ncbi_submitter: Broad Institute


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: University of Antwerp


ncbi_organism_name: Streptomyces sp. NBC_01568

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Proteiniphilum sp.


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Riverton; South Australia

ncbi_organism_name: Rhizobium sp. SRDI969

ncbi_submitter: Murdoch University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_country: China: Hangzhou

ncbi_isolation_source: ascites

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia

ncbi_isolation_source: Chilli

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: University of Thessaly


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: Norwich

ncbi_submitter: Imperial College London


ncbi_submitter: NARO Institute of Fruit Tree Science (NIFTS), National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas arboricola;x__Xanthomonas arboricola pv. pruni;x__Xanthomonas arboricola pv. pruni MAFF 301427


ncbi_organism_name: Blautia stercoris


ncbi_country: Brazil: Paran; Palmeiras

ncbi_isolation_source: tissue sample

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_isolation_source: lake water

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus pseudopneumoniae


ncbi_country: Russia

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: NNSw 2388

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Fusobacterium sp. CAG:649

ncbi_submitter: DTU


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: wastewater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: slaughterhouse

ncbi_organism_name: Campylobacter jejuni subsp. jejuni 327

ncbi_submitter: Faculty of Life Sciences, Department of Food Science, University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 327


ncbi_assembly_name: Rumen uncultured genome RUG10431

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Paenibacillus sp. DRB1-1

ncbi_submitter: RWTH Aachen


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: New Zealand: Campbell Island

ncbi_isolation_source: brain

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Massey University


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Italy: Sardinia

ncbi_isolation_source: fetal tissue

ncbi_submitter: University of Sassari

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Abortusovis;x__Salmonella enterica subsp. enterica serovar Abortusovis str. SS44


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Bacteroides humanifaecis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Togo: Lome

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universite de Lome


ncbi_organism_name: Paenibacillus sp. UNCCL52

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-E20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: VA

ncbi_isolation_source: inflamed biopsy tissue from sigmoid colon

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-62

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_isolation_source: Cake

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Microbacterium sp. CCNWLW134

ncbi_submitter: Northwest A&F University


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolate: Alphaproteobacteria sp. RBC091

ncbi_isolation_source: wastewater biofilm

ncbi_strain_identifiers: Alphaproteobacteria sp. RBC091

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient23 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnoclostridium phytofermentans ISDg

ncbi_strain_identifiers: ISDg

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: IMGAG (Universitaetsklinikum Tuebingen)


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Tistrella mobilis

ncbi_submitter: Shenzhen Bay Lab


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudochrobactrum asaccharolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Desulfobacterium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: France

ncbi_isolation_source: alpine goat rumen

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: university of caen lower normandy


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: carrot

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Anaerococcus lactolyticus ATCC 51172

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Clemson University


ncbi_country: Australia: Monaro; NSW

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-P08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacterium frigidarium

ncbi_submitter: Linnaeus University


ncbi_country: USA: MS

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR3796

ncbi_submitter: Broad Institute


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: Kenya

ncbi_isolation_source: marine sediment

ncbi_organism_name: Labrenzia sp. PHM005

ncbi_submitter: CENTRO DE INVESTIGACIONES BIOLOGICAS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: dtu national food institute


ncbi_organism_name: Desulfopila sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Treponema saccharophilum

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Psychrobacter nivimaris

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Phycisphaera mikurensis NBRC 102666

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__Phycisphaeraceae;g__Phycisphaera;s__Phycisphaera mikurensis;x__Phycisphaera mikurensis NBRC 102666


ncbi_organism_name: Escherichia coli

ncbi_submitter: Imperial College London


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. SH14S957

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Sulfuricurvum sp.


ncbi_organism_name: Streptomyces sp. NPDC014882

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora sp. NPDC049203


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rowley; Massachusetts

ncbi_isolation_source: untreated salt marsh sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: addis ababa university


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_organism_name: Carnobacterium divergens


ncbi_organism_name: Tateyamaria sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ureaplasma sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: food

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Processing plant

ncbi_organism_name: Leuconostoc gasicomitatum

ncbi_submitter: University of Helsinki


ncbi_country: Brazil: Mato Grosso

ncbi_isolation_source: lymph nodes

ncbi_organism_name: Mycobacterium tuberculosis variant bovis

ncbi_submitter: Cuiaba University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Klebsiella sp. CN_Kp115

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium RIFCSPHIGHO2_02_FULL_56_12


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: EMG


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_submitter: Curtin University


ncbi_country: Netherlands: Leiden

ncbi_organism_name: Synechococcus sp. CCY 0621

ncbi_submitter: University of Bristol


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Oscillibacter sp. CAG:241

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,12:r:-


ncbi_country: Israel

ncbi_isolation_source: larvae developed in green  Suri  olives

ncbi_organism_name: Candidatus Erwinia dacicola

ncbi_strain_identifiers: IL

ncbi_submitter: Hebrew University of Jerusalem


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: feces

ncbi_organism_name: Galactobacillus timonensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Rifleibacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__Candidatus Rifleibacteriota incertae sedis;g__Candidatus Rifleibacterium;x__unclassified Candidatus Rifleibacterium;s__Candidatus Rifleibacterium sp.


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus sp. LJL51

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Helicobacter pylori NQ4060

ncbi_submitter: MHH Hannover Medical School


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. FSL M7-1431

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M7-1431


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas sp. LH21

ncbi_submitter: Guangxi Universiy


ncbi_country: USA

ncbi_organism_name: Bradyrhizobium sp. WSM4349

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhizobium sp. BK529


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_country: China: Luzhou

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Aalborgicola lynettensis

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Actinomyces graevenitzii


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-908

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Thermincola sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABFQU

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acetilactobacillus jinshanensis

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Microbacteriaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Guangxi University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Mozambique

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Control Grass (No Manure)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GC T1 EMB CEF 1

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Metaruminococcus;s__Candidatus Metaruminococcus gallistercoris


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5413

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Russia: Moscow

ncbi_isolation_source: lumbar liquor

ncbi_submitter: SRCAMB


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Australia: Brisbane

ncbi_submitter: The University of Sydney


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail goat meat

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Semmelweis University


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-3-4

ncbi_submitter: Curtin University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0302293.4

ncbi_submitter: IGS


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Neisseria basseii

ncbi_submitter: University of Oxford


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_organism_name: Yoonia sp. TsM2_T14_4

ncbi_submitter: Technical University of Denmark (DTU)


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: NIAB East Malling Research


ncbi_country: USA: New York City

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacterium sp.


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: University of Georgia


ncbi_country: Algeria

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Salipiger sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Bacteroides uniformis


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Synechococcus sp. R60.1

ncbi_submitter: University of Montana


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Novome Biotechnologies


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Acetobacter persici

ncbi_submitter: Teagasc


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Sphingobacterium zeae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Brachybacter algidus

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces


ncbi_assembly_name: freshwater MAG --- I3b_bin-363

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Taiwan: Kenting Coast

ncbi_isolation_source: coral tissue

ncbi_organism_name: Endozoicomonas montiporae

ncbi_submitter: Woods Hole Oceanographic Institution


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Aeromonas sp. SrichE-2G

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Liaoning province

ncbi_isolation_source: drainage

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Bangladesh: Laksam

ncbi_isolation_source: arsenic-impacted human gut samples taken from 10 individuals over 4 consecutive days

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Uppsala University


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV058

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: South Korea: Taean County

ncbi_isolation_source: sediment

ncbi_organism_name: Agarivorans sp. TSD2052

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Sediminicola sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: France

ncbi_isolation_source: grap must

ncbi_organism_name: Weissella confusa

ncbi_strain_identifiers: CIRM-BIA 2234

ncbi_submitter: Brigham Young University


ncbi_organism_name: Butyricicoccus sp. AF22-28AC

ncbi_submitter: BGI


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_submitter: Portland State University


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. C-M14

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Streptomyces coelicolor

ncbi_submitter: The Catholic University of Korea


ncbi_country: USA: CA

ncbi_isolation_source: liver bovine cow

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Columbia University Medical Center


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Harvard University


ncbi_country: Brazil: Roraima State

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Bradyrhizobium macuxiense

ncbi_submitter: Embrapa Agrobiologia


ncbi_organism_name: Novosphingobium sp. GV079

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12627

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Tianjin

ncbi_isolation_source: organ

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Tianjin Agricultural University


ncbi_country: Norway: Akershus

ncbi_isolation_source: abscess fluid

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Actinoallomurus sp. NPDC052308

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU2 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: RU2 LB34

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL120

ncbi_submitter: Aarhus University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Staphylococcus aureus M1098

ncbi_submitter: Broad Institute


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Ileibacterium valens


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: The University of Queensland


ncbi_isolate: metabat2_coassembly_bwa.141 MAG

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.141 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Anaerostipes caccae L1-92

ncbi_submitter: Stanford University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: USA: KS

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Cypionkella sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Wuhan

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Pucheng; Shaanxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: Northwest A&F University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia sp. WS1211

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Cystobacter fuscus

ncbi_strain_identifiers: NCWS

ncbi_submitter: University of Mississippi


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraglaciecola sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- MJ110712B_bin-126

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_48_18


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Methylobacterium mesophilicum

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Propionibacterium sp. NM47_B9-13

ncbi_submitter: University of Toronto


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Coralloluteibacterium stylophorae

ncbi_submitter: Kingston University London, United Kingdom


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gemmiger excrementipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger excrementipullorum


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing University