ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_assembly_level: Complete Genome

ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_assembly_level: Scaffold

ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_519C7

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: South Korea

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Dankook University


gtdb_representative: t

ncbi_country: Russia: Kulunda Steppe

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Cyanobacteria bacterium T3Sed10_344R1

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium T3Sed10_344R1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: South Dakota

ncbi_isolation_source: Intestinal content

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: South Dakota State University


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Georgia


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany

ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Faecalicatena fissicatena

ncbi_refseq_category: reference genome

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Lund University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Acinetobacter ursingii


ncbi_isolation_source: Bearded dragon

ncbi_organism_name: Campylobacter iguaniorum

ncbi_submitter: Utrecht University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: UVEG


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Enterococcus faecium


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: Rectal swab

ncbi_submitter: Geogentics


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: not available

ncbi_organism_name: Raoultella ornithinolytica


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: USDA ARS


ncbi_organism_name: Pseudomonas sp. JS3066

ncbi_submitter: Shanghai Jiaotong University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Anaeromassilibacillus sp. SJQ-1

ncbi_submitter: Shandong University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Kyoto University


ncbi_organism_name: Bacillus salipaludis

ncbi_submitter: Universidad San Pablo CEU


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Rossellomorea oryzaecorticis

ncbi_submitter: Yichun University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Leucobacter sp. W1153

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University Hong Kong


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Intrauterine purulent content

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii


ncbi_organism_name: Escherichia sp. WS2055

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: cervical

ncbi_organism_name: Staphylococcus sp. HMSC065C09

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_assembly_name: Rumen uncultured genome RUG13531

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Hoeflea sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Chryseobacterium sp. CCH4-E10

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-639

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: China

ncbi_isolation_source: nodules

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_submitter: Hebei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: France: Arcueil

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_isolation_source: alfalfa seeds (commercial)

ncbi_organism_name: Pantoea sp. JV6

ncbi_submitter: University of Minnesota


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Thalassovita aquimarina

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Florida

ncbi_organism_name: Rhodococcoides fascians 04-516

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_isolation_source: COPD airways

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Terrimicrobiaceae bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Mageeibacillus indolicus

ncbi_submitter: EMG


ncbi_organism_name: Methylobacterium litchii

ncbi_submitter: Guangdong Microbial Culture Collection Center


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Japan: Wakayama

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19104


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0100

ncbi_submitter: Broad Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Cronobacter turicensis z3032

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: New York City

ncbi_isolation_source: blood

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG23

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: United Kingdom

ncbi_submitter: Swansea University


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Malaysia

ncbi_isolation_source: stool

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi;x__Salmonella enterica subsp. enterica serovar Typhi str. ST0208


ncbi_organism_name: Bellilinea sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: USA: South Dakota

ncbi_isolation_source: Yates Shaft; SURF

ncbi_organism_name: Geobacillus sp. 44C

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: New Zealand

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Agrococcus sediminis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Gemmiger avium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger avium


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Prevotella histicola

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hominilimicola sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Salmonella enterica

ncbi_submitter: McGill University


ncbi_country: Slovakia

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University in Bratislava, Faculty of Natural Sciences


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Anaerovibrio sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: uncultured Enorma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Prevotella nigrescens

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nantong Center for Disease Control and Prevention


ncbi_organism_name: Bacillus cereus group sp. BceL220

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL220


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Devosia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Eudoraea sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Ottawa

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Ottawa


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Microcoleus sp. A6-D1

ncbi_submitter: Palacky University Olomouc


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Freshwater products of animal origin from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli 102651

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: South Africa

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori SouthAfrica20

ncbi_submitter: Vanderbilt University School of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Enterocloster sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Oleispira antarctica

ncbi_submitter: University of Calgary


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indian Ocean

ncbi_isolation_source: Indian Monsoon Gyres Province

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Proteus faecis

ncbi_submitter: City University of Hong Kong


ncbi_country: Czech Republic: Hradec Krlov

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Charles University in Prague


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Chinese Academy of Science


ncbi_country: Italy: Sicilia

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium botulinum B2 331

ncbi_submitter: Army Medical and Veterinary Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B2 331


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Hainan

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: USA: California; Pasadena

ncbi_isolation_source: rhizosphere soil from the California Institute of Technology Campus

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Marjoram

ncbi_organism_name: Enterobacter vonholyi

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Bergen


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Pakistan


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13912

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bordetella bronchiseptica Bbr77

ncbi_submitter: WTSI


ncbi_assembly_name: Rumen uncultured genome RUG10070

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_country: Japan

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Nankai University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Streptomyces sp. NPDC051014

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: USA: San Diego; Quivera Basin

ncbi_isolation_source: Tubeworm

ncbi_organism_name: Pseudoalteromonas sp. MMG005

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio sp. FF59

ncbi_submitter: University of Vienna


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: Campylobacter jejuni CVM 41918 v1.0

ncbi_organism_name: Campylobacter jejuni CVM 41918

ncbi_submitter: FDA/CVM


ncbi_organism_name: Roseburia faecis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Variovorax sp. CCNWLW186

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces yatensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Chloroflexi bacterium ADurb.Bin344

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium ADurb.Bin344


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Yale University


ncbi_organism_name: Planctobacterium marinum

ncbi_submitter: Plant Environmental Microbiology Group, Institute of Plant Science and Resources, Okayama University


ncbi_country: Brazil

ncbi_isolation_source: pecked egg organ

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Bacteroides] pectinophilus

ncbi_submitter: EMG


ncbi_organism_name: Kouleothrix sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Vaginal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Mahidol University


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: Mexico

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: BUAP-UNAM-CINVESTAV


ncbi_country: USA

ncbi_organism_name: Lactobacillus johnsonii

ncbi_strain_identifiers: CIRM-BIA 2080

ncbi_submitter: Brigham Young University


ncbi_country: Italy: Roma

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Yeoju

ncbi_isolation_source: kimchi

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood


ncbi_country: Ireland


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_organism_name: Mycetocola saprophilus

ncbi_submitter: University of Tehran


ncbi_submitter: University of Southampton


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Bergen


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: Hafnia alvei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Streptomyces sp. NPDC088170

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Ideonella dechloratans

ncbi_submitter: Xiamen University


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Agarilytica sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Desulfovibrio sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Micavibrio aeruginosavorus EPB

ncbi_strain_identifiers: EPB

ncbi_submitter: Weizmann Institute of Science


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14167

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Lebanese American University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


gtdb_type_species_of_genus: t

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix thermosphacta;x__Brochothrix thermosphacta DSM 20171 = FSL F6-1036


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC088106

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria innocua

ncbi_submitter: Northumbria University


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia savannae

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C87_11

ncbi_submitter: IGS


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: University of Iowa Hospital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: San Diego State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Pseudomonas sp. ESBL2

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Blautia obeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Rhodococcus sp. M8-20

ncbi_submitter: Research Institute for Genetics and Selection of Industrial Microorganisms(Genetika)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. M8-20


ncbi_country: China: South China Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudohongiella nitratireducens

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Blautia merdigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: host s whole body

ncbi_organism_name: Candidatus Erwinia haradaeae

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_country: United Kingdom

ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Greece

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital of Larissa


ncbi_assembly_name: Rumen uncultured genome RUG12184

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Campylobacter sp. US42a

ncbi_submitter: University of Padova


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium sp. Arg816

ncbi_submitter: University of Pretoria


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Neisseria sicca


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: CAU


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Luteimonas rhizosphaericola

ncbi_submitter: Inner Mongolia University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food/environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Japan: Hokkaido

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Georgia: Batumi

ncbi_isolation_source: intestine

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: NCDC of Georgia


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_organism_name: Candidatus Caccousia avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Caccousia;s__Candidatus Caccousia avicola


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas nicosulfuronedens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Kitasatospora sp. NPDC051984


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anoxybacteroides rupiense

ncbi_submitter: The Aga Khan University Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. NW487

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Firmicutes bacterium CAG:103

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:103


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Mill Valley; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0325R

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0965


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 73 (4-2393174)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 73 (4-2393174)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Clostridium perfringens


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ponticoccus sp. SC2-56

ncbi_submitter: Shantou University


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: UNESP-FCAV


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-274

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: new MAG-274

ncbi_submitter: Micoorganism


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: urinary tract infection of a hospitalized patient

ncbi_organism_name: Enterococcus faecium U0317

ncbi_submitter: Dept. of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Nocardiopsis codii

ncbi_submitter: CIIMAR - Interdisciplinary Centre of Marine and Environmental Research


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Yonsei University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4351

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4351


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: EMG


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Colombia: Pereira

ncbi_submitter: Universidad El Bosque


ncbi_country: Germany

ncbi_isolation_source: half milk sample

ncbi_organism_name: Mycoplasma mycoides

ncbi_submitter: Landesbetrieb Hessisches Landeslabor (LHL)


ncbi_organism_name: uncultured Escherichia sp.


ncbi_country: China: Hohhot

ncbi_isolation_source: dairy products

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: leaf

ncbi_organism_name: Micromonospora sp. MP36

ncbi_submitter: Faculty of Pharmaceutical Sciences, Chulalongkorn University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: INRA


ncbi_country: China

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Robiginitalea sp. SP8

ncbi_submitter: Shantou University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. Cr_A10

ncbi_submitter: Aristotle University of Thessaloniki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Cr_A10


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG12167

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: France

ncbi_isolation_source: bacterial strain isolated from smoked salmon

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: Ifremer


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-1332

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Marvinbryantia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Vibrio owensii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Norway

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. MG-27-Goln-C1

ncbi_submitter: University of Innsbruck


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Xanthomonas euvesicatoria pv. alfalfae

ncbi_strain_identifiers: LMG 495

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Logan; Utah

ncbi_isolation_source: Pollen provision

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0767

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: wastewater

ncbi_submitter: FIOCRUZ


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0002

ncbi_submitter: University of Liege


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Photorhabdus aegyptia

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bradyrhizobium sp. RT11b

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: IMG-taxon 2599185245 annotated assembly

ncbi_organism_name: Burkholderia sp. b13

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus freudenreichii

ncbi_submitter: SC


ncbi_country: China: Yunan

ncbi_isolation_source: Milk fan

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: TCS

ncbi_submitter: Shanghai Institute of Technology


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: UNIVERSIDAD ANDRES BELLO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Malaysia: Johor; Batu Pahat

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Institute for Medical Research


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: Wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_organism_name: Brucella abortus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: subseafloor

ncbi_organism_name: Vibrio diazotrophicus

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom: Scotland; Western Isles

ncbi_isolation_source: Atlantic salmon

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM71

ncbi_submitter: AgResearch


ncbi_country: USA: Madison; WI

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: agricultural soil

ncbi_organism_name: Nocardioides sp. PD653-B2

ncbi_submitter: Microbiology, Applied Biology and Chemistry, Tokyo university of Agriclture


ncbi_isolate: Pseudomonas sp. Irchel 3H3

ncbi_organism_name: Pseudomonas sp. Irchel 3H3

ncbi_strain_identifiers: Pseudomonas sp. Irchel 3H3

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Salmonella sp. C3314

ncbi_submitter: Sichuan University


ncbi_organism_name: Xanthomonas sp. WCS2017Noco2-62

ncbi_submitter: Utrecht University


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Firmicutes bacterium UBA3036

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3036


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: JPIAMR ARMIS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-1367

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Trueperaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: San Diego State University


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: France: Lille

ncbi_isolation_source: Abdominal wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: French National Center for Antibiotics Resistance


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghaishinongyekexueyuan


ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex. Lucinoma kazani)


ncbi_organism_name: Clostridioides difficile T10

ncbi_submitter: LPBA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Manitoba


ncbi_country: South Korea: South Sea

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Kangiella sediminilitoris

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Stellaceae bacterium


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Streptomyces collinus Tu 365

ncbi_submitter: Bielefeld University


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CAU


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: GA

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Tromso


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA

ncbi_isolation_source: cervix

ncbi_organism_name: Brucella tritici

ncbi_strain_identifiers: LMG 401

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: environmental isolate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: Yale University


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Korea: Gimhae-si

ncbi_isolation_source: Myocastor coypus

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Bangladesh

ncbi_isolation_source: Swab from a wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Dhaka


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Lascolabacillus sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3717

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3717


ncbi_country: Canada: Calgary

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Actinoplanes sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_country: Portugal

ncbi_isolation_source: Penile

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. S1A1-8

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: Massiliomicrobiota timonensis 82D2

ncbi_organism_name: Massilimicrobiota timonensis

ncbi_strain_identifiers: Massiliomicrobiota timonensis 82D2

ncbi_submitter: Keio University, School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Axilla Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: China: Beijing

ncbi_isolation_source: milk from animal29

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Hebei University of Science & Technology


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Oxford


ncbi_country: Serbia: Rimski Sancevi

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: University of Exeter


ncbi_isolation_source: feces

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Primorskyibacter flagellatus

ncbi_submitter: Ocean University of China


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-800

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_submitter: EPFL


ncbi_organism_name: Calothrix rhizosoleniae SC01

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: EMG


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Salmonella sp. SAL04199

ncbi_submitter: Zhejiang university


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Southern Federal University


ncbi_organism_name: Azovibrio sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Antrihabitans spumae

ncbi_strain_identifiers: NCIMB 15449

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: CORNELL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.1 filter

ncbi_organism_name: Spirochaetes bacterium GWD1_27_9

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium GWD1_27_9


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: caecum

ncbi_organism_name: Mediterranea massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: rusty root lesions

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: Technische Universitaet Muenchen

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen B

ncbi_organism_name: Tatumella sp. JGM94

ncbi_submitter: Cornell University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Streptococcus sp. CCH5-D3

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: kimchi

ncbi_organism_name: Lacticaseibacillus saniviri

ncbi_strain_identifiers: CJNU 3004

ncbi_submitter: KOREA NATIONAL UNIVERSITY OF TRANSPORTATION


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured OM182 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;x__environmental samples;s__uncultured OM182 clade bacterium


ncbi_isolation_source: Cattle Hide

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Streptomyces sp. NPDC088752

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Microcoleus sp. CZ3-B2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: Australia

ncbi_isolation_source: Midstream urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolate: Urine

ncbi_strain_identifiers: NILS72:B2;STp 32;STw 127;O6:H31;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_country: Gabon

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium moukalabense

ncbi_submitter: National Institute of Genetics


ncbi_assembly_name: IMG-taxon 2675903154 annotated assembly

ncbi_organism_name: Chryseobacterium taichungense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea: Gangneung-si

ncbi_isolation_source: lagoon sediment

ncbi_organism_name: Lacihabitans sp. LS3-19

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Streptomyces purpureus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Yale University


ncbi_country: Colombia: Antioquia; Rionegro

ncbi_isolation_source: Secretion

ncbi_submitter: University of Antioquia


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: Genoscope CEA


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institute of Antibiotics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: SA16 genome assembly

ncbi_country: Brazil

ncbi_organism_name: Staphylococcus aureus SA16

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Quebec

ncbi_isolation_source: Animal - Chicken-Environment swab

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19970510


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudoflavonifractor sp. An184

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands: Amsterdam

ncbi_strain_identifiers: SP-46 Combo

ncbi_submitter: United States Department of Agriculture


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA4

ncbi_submitter: Curtin University


ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shenzhen

ncbi_organism_name: Alistipes sp. AF48-12

ncbi_submitter: BGI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Jiangnan University


ncbi_organism_name: Enterococcus viikkiensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: University of Bremen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-418-O02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Benin

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Aalborg University


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2002035

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: the seqafrica consortium


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Blastomonas sp. CCH11-A4

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: liver

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Tianjin Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University of Washington


ncbi_isolation_source: Blood


ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Denmark

ncbi_organism_name: Acinetobacter sp. NIPH 1852

ncbi_strain_identifiers: NIPH 1852

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__;o__;f__;g__Candidatus Alloenteromonas;s__Candidatus Alloenteromonas pullistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;s__Candidatus Alloenteromonas pullistercoris


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Georgia

ncbi_isolation_source: environmental water

ncbi_strain_identifiers: 3 mTEC

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: brain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Kentucky


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Germany: Luebeck

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Cellulomonas sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Logan River

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. SceaMP-e96

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: NARMS

ncbi_isolation_source: chicken carcass rinsate

ncbi_organism_name: Enterococcus cecorum


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: UFRJ - Rio de Janeiro Federal University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus sp. AF42

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AF42


ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Johannesburg


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Nitrospirota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus D30

ncbi_submitter: University of Central Florida


ncbi_assembly_name: Rumen uncultured genome RUG11590

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: England; London

ncbi_isolation_source: Green lizard

ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Australia

ncbi_isolation_source: salmon

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF14-10

ncbi_submitter: BGI


ncbi_organism_name: Gandjariella thermophila

ncbi_submitter: Universitas Indonesia


ncbi_country: China: Haikou; Hainan province

ncbi_isolation_source: respiratory tracts

ncbi_organism_name: Pelistega europaea

ncbi_submitter: Hainan Medical University-University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Yinchuan

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz