ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: [Pasteurella] aerogenes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA:New York City

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: metal

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Queensland


ncbi_assembly_level: Complete Genome

ncbi_submitter: The Key Laboratory of Dairy Biotechnology and Bioengineering, Education Ministry of P. R. China, Department of Food Science and Engineering, Inner Mongolia Agricultural University, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis V9


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from newly infected colony B

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of Florida


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: USA

ncbi_organism_name: Runella zeae DSM 19591

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Runella;s__Runella zeae;x__Runella zeae DSM 19591

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China:Henan; Nanyang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Glaciecola amylolytica

ncbi_submitter: Baewha Women's University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_country: Azerbaijan: Binagady region

ncbi_isolation_source: production water from the Binagady oilfield

ncbi_organism_name: Soehngenia longivitae

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: human oral cavity UC02

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium oral taxon 488


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Acetobacter persici

ncbi_strain_identifiers: Ai

ncbi_submitter: National Institute of Genetics


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Japan:Tokyo 194-8511; Machida; Minamiooya 11; Mitsubishi Kasei Institute of Life Sciences

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_country: USA: Yamhill County; Oregon

ncbi_organism_name: Rathayibacter rathayi

ncbi_submitter: Oregon State University


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: University of Florida


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Cold smoked salmon brine injected

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: uncultured Methylomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: Probiotics Sempio Foods CompanyMicrobiome Convergence Center


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R6

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: Duke University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Acidithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo102

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_assembly_level: Chromosome

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_submitter: Food and Drug and Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: uncultured Spongiibacteraceae bacterium


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Nacional de Salud


ncbi_assembly_name: freshwater MAG --- VK_bin-4140

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: BILS


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Poona


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Tielong; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


gtdb_type_species_of_genus: t

ncbi_organism_name: Rhodoferax fermentans

ncbi_submitter: Korea University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Massachusetts

ncbi_isolation_source: chick; cloacal swab

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: MI; Macomb

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_isolation_source: ballast tank

ncbi_organism_name: Pukyongia sp.

ncbi_submitter: Shandong university


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Antarctica: Fildes Peninsula

ncbi_isolation_source: Antarctic

ncbi_organism_name: Antarcticimicrobium sediminis

ncbi_submitter: Shandong University


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: pleural liquid

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2585428143 annotated assembly

ncbi_organism_name: Legionella maceachernii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India: Hyderabad

ncbi_isolation_source: cecum

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: University of Hyderabad


ncbi_country: South Africa:Cape Town

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Colon


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter sp. LF10

ncbi_submitter: Pearl River Fisheries Research Institute


ncbi_isolation_source: sterile body fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Malaysia

ncbi_isolation_source: Pus culture

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Fretibacterium sp.


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Synechococcus sp. UW179B

ncbi_submitter: UNIVERSITY OF SOUTHERN CALIFORNIA


ncbi_organism_name: Galbibacter sp.


ncbi_country: Spain: Malaga

ncbi_isolation_source: Abdominal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium GW2011_GWD2_45_10


ncbi_country: Spain: Catalonia

ncbi_isolation_source: Pork meat

ncbi_organism_name: Arcobacter suis CECT 7833

ncbi_strain_identifiers: CECT 7833

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden

ncbi_organism_name: Mannheimia granulomatis

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: closed biodigester

ncbi_organism_name: Prevotella sp. UBA1378

ncbi_submitter: University of Queensland


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC048489

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Thermodesulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Oceanobacillus caeni

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: Aarhus University


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Paludibacteraceae bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Liaoning province

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: KU Leuven

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 694762

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 694762


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus XMU1428

ncbi_submitter: China University of Geosciences


ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Denmark

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Guizhou; Longli


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Aquirhabdus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillus sp. FSL R10-2780

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R10-2780


ncbi_submitter: Christian Medical College and Hospital


ncbi_isolation_source: Proximal colon


ncbi_assembly_name: freshwater MAG --- Loclat_bin-07230

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Northern Mariana Islands: Rota

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Hawaii at Manoa


ncbi_country: USA: Albany

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae ATL_2011_01-25

ncbi_submitter: Read Laboratory, Emory University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Lebanon: North

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Assam Agricultural University


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Nanping City; Fujian Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Nigeria

ncbi_organism_name: Brucella abortus 80/101

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: roots

ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_assembly_name: Rumen uncultured genome RUG382

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Sputum

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenisporosarcina sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: bile

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong; Shantou

ncbi_isolation_source: blood

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA7616

ncbi_submitter: University of Queensland


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: JCVI


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Odoribacter splanchnicus CAG:14

ncbi_submitter: DTU


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-237

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli PCN033

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Erysipelothrix sp. UBA3377


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Italy: Sarentino (BZ)

ncbi_isolation_source: ruminal content

ncbi_organism_name: Clostridium botulinum C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ligilactobacillus sp. LYQ112

ncbi_submitter: China CDC


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_organism_name: Methylovirgula sp.


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: icddr,b


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG251

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sputum

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Pectoral abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para


ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Talagante

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: baby feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: University of Calgary


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli FRIK523

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Georgia Tech


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Methylococcales bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence shower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Russia

ncbi_isolation_source: Soil

ncbi_organism_name: Aminobacter carboxidus

ncbi_submitter: University of Parma


ncbi_country: Argentina: Buenos Aires; La Plata

ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: B

ncbi_submitter: CONICET-CINDEFI- La Plata


ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Pseudolactococcus raffinolactis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2797

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Albany

ncbi_isolation_source: mixed culture 16-3462 from Mycobacteria Growth Indicator Tube inoculated with human sputum sample containing Mycobacterium tuberculosis and Branchiibius sp. NY16-3462-2

ncbi_organism_name: Branchiibius sp. NY16-3462-2

ncbi_submitter: Wadsworth Center


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: IMG-taxon 2698536748 annotated assembly

ncbi_organism_name: Flavobacterium pectinovorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Xiamen University


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_submitter: USDA ARS


ncbi_country: China: Shenzhen

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Treponema sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Smithella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Edaphobacter sp.


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5403

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5403


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP250ASi

ncbi_submitter: Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_submitter: School of Medicine, Southeast University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_strain_identifiers: CDC AR Bank #0579

ncbi_submitter: Signature Science, LLC


ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Denmark: Loevehovederne; Oestersoevej; 4872 Idestrup; Denmark; grassy field; by a lake; at sea level

ncbi_organism_name: Streptomyces sp. NBC_01016


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: India: Sambhar; Jaipur

ncbi_isolation_source: water sample from Sambhar lake

ncbi_organism_name: Alkalilimnicola ehrlichii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: South Korea

ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacterium sp. N1718

ncbi_submitter: Jeju National University


ncbi_organism_name: Shinella sp. WSC3-e

ncbi_submitter: Helmholtz Centre for Environmental Research


ncbi_country: China: Yichen; Hubei

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: Hubei University of Technology


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Peteryoungia aggregata LMG 23059

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand: Nakhon Pathom Province

ncbi_organism_name: Terrilactibacillus laevilacticus

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Portugal

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Acinetobacter puyangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: China: Tianbian Village; Shanxia Township; Hui an County; Quanzhou City; Fujian Province

ncbi_isolation_source: symptomatic sweet potato

ncbi_organism_name: Candidatus Phytoplasma citri

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma citri


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium kutscheri

ncbi_submitter: institute of laboratory animal sciences


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC056188


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Acidobacteria bacterium UBA890

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium UBA890


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus sp. LCP25S3_G1

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LCP25S3_G1


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Sandaracinus sp.


ncbi_organism_name: uncultured Holophagae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Umea_bin-05786

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 0 to 5cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Asaccharobacter sp.

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom:Scotland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Ja_bin-2770

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF37-6AT

ncbi_submitter: BGI


ncbi_country: Spain: Barcelona

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Polaromonas sp. UBA4122

ncbi_submitter: University of Queensland


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Spain

ncbi_isolation_source: liquid joint sample

ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: KyungHee University


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_country: Australia: Moreton Bay

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Monitilora ramsayi)


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BEI Resources


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tianjin University of Science & Technology


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Cadmium-contaminated soil

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: La Trobe University


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Galway


ncbi_country: USA

ncbi_isolation_source: healthy swine cecal tissue samples

ncbi_organism_name: Megasphaera elsdenii 14-14

ncbi_submitter: National Animal Disease Center


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Alberta


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Duke University


ncbi_organism_name: Larsenimonas salina

ncbi_submitter: BioPS Co., Ltd.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: EMG


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium hydrocarbonoxydans

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: CA; San Francisco

ncbi_isolation_source: blood culture

ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: UCSF


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 19

ncbi_isolation_source: acid mine drainage site biofilm from Rose Pool

ncbi_organism_name: Phycisphaerales bacterium

ncbi_strain_identifiers: MAG 19

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: USA: Cambridge

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Terrimonas ferruginea

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3658

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: AOP34_AQ2_surf _bin _3

ncbi_organism_name: Corynebacterium sp.

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _3

ncbi_submitter: Genoscope


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Russia: Kazan

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas sp. EZ-C24

ncbi_submitter: Kazan (Volga Region) Federal University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_strain_identifiers: IPAV

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Lai;x__Leptospira interrogans serovar Lai str. IPAV


ncbi_submitter: University College Cork


ncbi_country: South Korea: Kyonggi University; Suwon

ncbi_isolation_source: forest soil

ncbi_organism_name: Massilia pinisoli

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Seattle

ncbi_isolation_source: blood

ncbi_organism_name: Mycobacterium paraffinicum

ncbi_submitter: UW


ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome RUG12524

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-1434

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Escherichia coli

ncbi_submitter: United States Department of Agriculture


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Yangzhou University


ncbi_country: China: Gungdong

ncbi_organism_name: Staphylococcus sp. 52716

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paenibacillus sp. LPE1-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-00493

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: Tanzania: Dar es Salaam

ncbi_submitter: University of Bergen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium GW2011_GWF2_38_9


ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: Sil NS 44

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: Kenya: Nyanza Province

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Central African Republic

ncbi_isolation_source: Carriage

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: Ethiopia

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces sp. NPDC096013

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Michigan State University


ncbi_isolate: AOP43_C2_coeur _bin _13

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP43_C2_coeur _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: Brevibacterium luteolum

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Krasilnikovia sp. MM14-A1004

ncbi_submitter: University of Yamanashi


ncbi_country: South Africa: Western Cape

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Singapore: Pulau Ubin

ncbi_organism_name: Ligilactobacillus faecis

ncbi_strain_identifiers: WILCCON 0062

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: France

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: beef product

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: North-west University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Herbinix sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Animal lymphoma parotid

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_isolation_source: human gut

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Streptococcus sanguinis SK36

ncbi_submitter: Virginia Commonwealth University


ncbi_country: China

ncbi_submitter: South China Agricultural University


ncbi_country: Portugal: Ermida

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. UME65

ncbi_submitter: University of Minho


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Australia

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Romania: Iasi

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactonifactor longoviformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: patient

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Queensland


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: Nebraska

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: HI

ncbi_isolation_source: albacore tuna anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Cutibacterium avidum 44067

ncbi_submitter: BAYGEN


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: Normal medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: China: Hongyuan; Sichuan

ncbi_isolation_source: breast milk

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Jiangsu Wecare Biotechnology Co., Ltd


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-09649

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Zapsychrus exili

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Zapsychrus;s__Candidatus Zapsychrus exili

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Zapsychrus;s__Candidatus Zapsychrus exili


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Mesorhizobium sp. CAU 1741

ncbi_submitter: Chung-Ang University


ncbi_country: USA: Missouri

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: faecal


ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6401

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6401


ncbi_organism_name: Exiguobacterium mexicanum

ncbi_submitter: Jiangxi Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium mexicanum


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TRS16

ncbi_submitter: Vanderbilt University


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 347


ncbi_assembly_name: PtemJ3 1.0

ncbi_organism_name: Photorhabdus temperata J3

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Fusobacterium hwasookii

ncbi_strain_identifiers: KCOM 1253

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: Pacific Ocean: Guinea

ncbi_isolation_source: Seawater

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_isolation_source: subgingival plaque of chronic periodontitis lesion

ncbi_organism_name: Veillonella rogosae

ncbi_strain_identifiers: KCOM 3468


ncbi_submitter: Florida Department of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Bizionia sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Elusimicrobiaceae bacterium


ncbi_organism_name: Klebsiella sp. C194

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: chungbuk national university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: SC

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermanaerothrix sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Ireland: Cork

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University College Cork


ncbi_organism_name: Blautia obeum

ncbi_submitter: Yonsei University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Staphylococcus epidermidis BCM-HMP0060

ncbi_submitter: Baylor College of Medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: AAFC


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: sea water

ncbi_organism_name: Henriciella barbarensis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Flagellimonas aurea

ncbi_submitter: Tang lab


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWA1_43_17


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12252

ncbi_submitter: South China Agricultural University


ncbi_country: USA: WI; Brown

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Willow soil

ncbi_organism_name: Nocardioides sp. WS12

ncbi_submitter: University of East Anglia


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Spain: Barcelona

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea: Goyang

ncbi_isolation_source: root

ncbi_organism_name: Roseateles violae

ncbi_submitter: Dongguk University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Ireland

ncbi_isolation_source: Unknown

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 55.U.08


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Spain: Palma de Mallorca

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus OCMM6045

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_02_FULL_51_13


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chlamydia trachomatis D/SotonD1

ncbi_submitter: Sanger Institute


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Labilithrix sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Nitrosomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mali

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C717_10

ncbi_submitter: IGS


ncbi_organism_name: Burkholderiales bacterium


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hospital Infantil de Mexico Federico Gomez


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: materia alba

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Russia: Belgorod Region

ncbi_isolation_source: chicken

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Sudan

ncbi_organism_name: Xanthomonas euvesicatoria pv. alfalfae

ncbi_submitter: IRHS

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_country: Mozambique

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Chryseobacterium indologenes


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Helsinki University


ncbi_isolation_source: Hot spring microbial mat

ncbi_organism_name: Caldovatus aquaticus

ncbi_strain_identifiers: SYSU G05006

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Division of Biomedical Food Research, National Institute of Health Sciences, NIHS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Chile: Temuco

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Paenibacillus ferrarius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Versatilivorator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Versatilivoradales;f__Candidatus Versatilivoraceae;g__Candidatus Versatilivorator;x__unclassified Candidatus Versatilivorator;s__Candidatus Versatilivorator sp.


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: MRSN BI Team


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Vreelandella alkaliphila

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Dorea phocaeensis

ncbi_submitter: AnimalBiome


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: University of Vienna


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: AR Bank #0349

ncbi_submitter: USDA-ARS


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc090519-7m_bin-0478

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Christian Medical College


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Humitalea rosea

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Massachusetts

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_assembly_name: IMG-taxon 2617270880 annotated assembly

ncbi_organism_name: Halomonas daqiaonensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Fecal Sample from Dairy Farm

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster;x__Salmonella enterica subsp. enterica serovar Muenster str. 0315


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Greece: Larissa

ncbi_isolation_source: Pig-tail ureteric stent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: Russia: Moscow

ncbi_isolation_source: intestine

ncbi_submitter: SRCAMB


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: Oak Ridge; Tennessee

ncbi_organism_name: Intrasporangium calvum

ncbi_submitter: Desert Research Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany: Helgoland harbor

ncbi_isolation_source: surface water of the southern North Sea

ncbi_organism_name: Octadecabacter temperatus

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Spain: Galicia

ncbi_isolation_source: Gingival crevicular fluid

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 00T2C

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__unclassified Alphaproteobacteria;s__Alphaproteobacteria bacterium endosymbiont of Tiliacea citrago


ncbi_organism_name: Pseudomonas sichuanensis

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Citrobacter sp.

ncbi_submitter: EMG


ncbi_country: Kenya: KDH MS1 Male TB Medical

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0024

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter thermotolerans

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: nasal swab

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia

ncbi_organism_name: Aerococcus sp. 1KP-2016

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: University of Alberta


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-K14

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Pork

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11678

ncbi_submitter: German Federal Institute for Risk Assessment