ncbi_organism_name: Microbacterium oleivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


gtdb_representative: t

ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Colorado State University


ncbi_assembly_level: Complete Genome

ncbi_country: France

ncbi_isolation_source: mastitis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UFMG


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 43_1


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Citrobacter sp. RHB21-C01

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Bacillus cereus group sp. BceL312

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL312


ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Nova Scotia

ncbi_isolation_source: lichen thallus

ncbi_organism_name: Nostoc sp. NMS1

ncbi_submitter: University of Liege


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Agromyces cerinus subsp. nitratus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: ANSES


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University


ncbi_country: Brazil: Vicosa Country; State of Minas Gerais

ncbi_isolation_source: lungs of sick pig

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Singapore: Hort Park

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14507

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Canada: Vancouver; BC

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon mucosa

ncbi_submitter: University of New Hampshire


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Suwon

ncbi_organism_name: Rubellimicrobium aerolatum

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: FL; Biscayne National Park

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Klenkia sp. PcliD-1-E

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: ATR 174 1B

ncbi_submitter: Vancouver Island University


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: nares

ncbi_organism_name: Enterobacter sp. PN108E5IIB

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1927


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee Veterinary College


ncbi_organism_name: Enterococcus sp. AZ079

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: dejecta of children

ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: CSIR-Institute of Mircrobial Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: drinking water

ncbi_organism_name: Hyphomonadaceae bacterium UBA4763

ncbi_submitter: University of Queensland


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Gemmatimonadales bacterium UBA7889


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus swab

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Metallibacterium scheffleri

ncbi_submitter: University of Waterloo


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS3003

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Ausgem


ncbi_country: China: Huaian

ncbi_submitter: Yangzhou University


ncbi_organism_name: Rubrivivax gelatinosus IL144

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_country: Singapore

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: USA: AZ

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Asinibacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: World Institute of Kimchi


ncbi_isolate: SPRUCE 445

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 445

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-3013

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Brazil

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_assembly_name: IMG-taxon 2693429822 annotated assembly

ncbi_organism_name: Paraburkholderia tuberum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG10578

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Palacky University Olomouc


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Ministry of Agriculture & Rural Development


ncbi_country: Malaysia: Sungai Klah

ncbi_isolation_source: Extreme high temperature habitat

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Donghu Lake; Wuhan City; Hubei Province

ncbi_isolation_source: Water sample of Donghu Lake; Wuhan City; Hubei Province; China

ncbi_organism_name: Paludihabitans sp. MB14-C6

ncbi_submitter: Sanming University


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: China Medical University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Beijing

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Rhodococcus sp. NPDC079359

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC079359


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Herbaspirillum sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: TX

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas Tech University


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Desulfolinea nitratireducens

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;x__Anaerolineales incertae sedis;g__Candidatus Desulfolinea;s__Candidatus Desulfolinea nitratireducens


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China

ncbi_isolation_source: Sleeve-fish

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Canada: Guelph; Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_strain_identifiers: W1 BHI 6

ncbi_submitter: UCSF


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Kings Canyon

ncbi_isolation_source: composite arid soil

ncbi_organism_name: Amycolatopsis regifaucium

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Amoebophilus asiaticus 5a2

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Amoebophilus;s__Candidatus Amoebophilus asiaticus;x__Candidatus Amoebophilus asiaticus 5a2


ncbi_isolation_source: peritoneal effusion

ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Helicobacter pylori SA162A

ncbi_submitter: MHH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Microbacterium sp. 70-38

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: FL

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Lanzhou Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium coyleae

ncbi_submitter: Loyola University Chicago


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Patescibacteria group bacterium UBA1544

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1544


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Thailand: Pathum Thani

ncbi_organism_name: Sporolactobacillus sp. THM7-7

ncbi_submitter: Food Biotechnology Research Unit, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113, Thailand Science Park, Phahonyothin Rd., Klong Nueng, Klong Luang, Pathumthani 12120, Thailand


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: infected soybean plant

ncbi_organism_name: Xanthomonas citri pv. glycines str. 8ra

ncbi_submitter: Chung Ang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines;x__Xanthomonas citri pv. glycines str. 8ra


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentibacter algarum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Stanford University


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_country: Japan:Hyougo; Himeji-city; National Hospital Organization Himeji Medical Center

ncbi_isolation_source: pus

ncbi_submitter: Sunstar Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus constellatus;sb__Streptococcus constellatus subsp. constellatus


ncbi_country: Poland: Raciaz

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Mycoplasmopsis mucosicanis

ncbi_submitter: Cornell University


ncbi_country: Germany: Lake Baerensee; Stuttgart

ncbi_isolation_source: soil from an ant-hill

ncbi_organism_name: Andreprevotia sp. IGB-42

ncbi_submitter: Fraunhofer Institute for Interfacial Engineering and Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: China: Guangdong

ncbi_organism_name: Chitinophagaceae bacterium 26-R-25

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptomyces sp. IBSBF 2390

ncbi_strain_identifiers: IBSBF 2390

ncbi_submitter: UFSCar


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Candidatus Stercoripulliclostridium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Stercoripulliclostridium;x__unclassified Candidatus Stercoripulliclostridium;s__Candidatus Stercoripulliclostridium sp.


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Nocardioides sp. GCM10023255

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Oxalobacteraceae bacterium


ncbi_isolate: SPRUCE 40

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_strain_identifiers: SPRUCE 40

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_country: Spain: Seville

ncbi_isolation_source: Blood culture

ncbi_submitter: Institute of Biomedicine of Seville (IBiS)


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptomyces sp. NPDC093598


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


gtdb_type_species_of_genus: t

ncbi_country: China: Jiangsu

ncbi_isolation_source: coastal water

ncbi_organism_name: Marinilongibacter aquaticus

ncbi_submitter: Hohai University


ncbi_organism_name: Defluviitoga sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0313R

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Devosia sp. Root635

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: cervix

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: France: Normandy

ncbi_isolation_source: auricular

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Thermogemmata sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: South Korea: Gochang

ncbi_isolation_source: rhizosphere of ginseng

ncbi_organism_name: Paraburkholderia ginsengiterrae

ncbi_submitter: Institute for Environmental Health

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIR-CDRI


ncbi_country: USA: Washington

ncbi_isolation_source: humeral membrane of a left shouder

ncbi_organism_name: Cutibacterium acnes PA20B

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020062474


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Yonsei University


ncbi_country: USA:California;Old Salinas River

ncbi_isolation_source: Water sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: London

ncbi_isolation_source: parent strain CV601 collected from dairy manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Western University


ncbi_organism_name: Gilliamella apicola


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Pedobacter jejuensis

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: Hawaii

ncbi_isolation_source: surface seawater into aquaculture facility

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: Oregon State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter sp.


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day5_noCT

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MS

ncbi_isolation_source: Leg wound

ncbi_organism_name: Staphylococcus aureus DAR3892

ncbi_submitter: Broad Institute


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Lachnospiraceae bacterium UBA1683

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Taiwan

ncbi_isolation_source: pobuzihi (fermented cummingcordia)

ncbi_submitter: Ming Chuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus pobuzihii;x__Ligilactobacillus pobuzihii E100301 = KCTC 13174


ncbi_assembly_name: freshwater MAG --- MJ130605B_bin-020

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: China: Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Puia sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Nanchang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University Health Science Center


ncbi_country: USA

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: throat

ncbi_organism_name: Staphylococcus aureus T16117


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Borreliella garinii Far04

ncbi_submitter: J Craig Venter Institute


ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: rice seed

ncbi_organism_name: Methylobacterium radiotolerans

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Klebsiella oxytoca BRL6-2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ecuador: Quito

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli


ncbi_country: Netherlands: Bonaire

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: USA: MN

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Planococcus sp. SE5179

ncbi_submitter: Shanxi Eye Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. SE5179


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: Rumen uncultured genome RUG10174

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: INRA


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pelolinea submarina


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Euzebyella saccharophila

ncbi_strain_identifiers: CECT 7477

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Pseudidiomarina halophila

ncbi_strain_identifiers: NCAIM B.02544


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas codiaei

ncbi_strain_identifiers: NCPPB 4350

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: University of Fribourg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Enterocloster asparagiformis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: BMQ

ncbi_submitter: Comsats University Islamabad


ncbi_country: USA: Aurora; CO

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Colorado - Boulder


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: FDA


ncbi_organism_name: Salmonella sp. fjx14s14

ncbi_submitter: Food safety


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Anseong

ncbi_isolation_source: stored rice grains

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Korea university


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Rothia aeria

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: USA: Colorado

ncbi_isolation_source: hyporheic zone

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_submitter: EPFL


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_organism_name: Peribacillus sp. NPDC097077

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetes bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0793

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces spectabilis


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Starke County; Indiana

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Max Planck Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Taiwan

ncbi_organism_name: Shewanella algae

ncbi_strain_identifiers: YTH

ncbi_submitter: National Chung Cheng University


ncbi_country: Brazil

ncbi_organism_name: Brucella oryzae

ncbi_submitter: University of Sao Paulo


ncbi_country: Russia: Central Russia

ncbi_isolation_source: vagina of healthy woman with no history of infectious and somatic diseases of the gastrointestinal tract and other organ systems

ncbi_organism_name: Lacticaseibacillus rhamnosus 51B

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S32

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Staphylococcus saprophyticus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France: Agen

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Sorbonne University


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_strain_identifiers: FPC 840

ncbi_submitter: INRA


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Montoursville; Pennsylvania

ncbi_isolation_source: Freshwater Creek

ncbi_organism_name: Flavobacterium sp. AED

ncbi_strain_identifiers: AED

ncbi_submitter: GCAT-SEEK


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Palmer LTER


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_organism_name: Bacillus cereus IS075

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus IS075


ncbi_country: Germany

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C725_88

ncbi_submitter: IGS


ncbi_country: Malaysia: Perak

ncbi_isolate: Perak

ncbi_strain_identifiers: Perak

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont of Ctenocephalides felis wCfeJ


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG1_02_41_171


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China:Yangling; Shaanxi

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: JW

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: Vibrio vulnificus


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: James Cook University


ncbi_country: Portugal: Matosinhos Doca (Porto)

ncbi_isolation_source: sliced vaccum-packed cold-smoked salmon

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Streptomyces sp. BBFR51

ncbi_submitter: University of Freiburg


ncbi_organism_name: Lachnospiraceae bacterium OM04-12BH

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_submitter: China Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Mycetohabitans sp. B46

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Curtobacterium ammoniigenes NBRC 101786

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Italy

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_isolation_source: Subgingival plaque of patients with aggressive periodontitis

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_organism_name: Aeromonas simiae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lawsonibacter sp.


ncbi_organism_name: Amycolatopsis sp. NPDC049252

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of British Columbia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coprococcus sp.


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Bacteroidetes bacterium SW_11_45_7

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium SW_11_45_7


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. BT730

ncbi_submitter: Seoul Women's university


ncbi_country: United Kingdom:Midlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 321

ncbi_submitter: SC


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: WWTP Brno

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Nose

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Dorea sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea:southern sea

ncbi_isolate: flatfish

ncbi_isolation_source: tissue

ncbi_submitter: National Leading Research Laboratory of Drug Resistance Proteomics


ncbi_organism_name: Bradymonadia bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Andujar

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_isolate: Faeces

ncbi_strain_identifiers: Faeces;STp 864;O169:H9;NILS05:E;STw 543

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Paris Saclay University


ncbi_country: Bangladesh: Hajiganj

ncbi_isolation_source: Human feces

ncbi_submitter: icddr,b


ncbi_country: USA: Washington

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Tenacibaculum aestuariivivum

ncbi_submitter: INRA


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3056

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 17 (4-7473087)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 17 (4-7473087)


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Paris

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Netherlands: Terschelling

ncbi_isolation_source: Dune grassland

ncbi_organism_name: Collimonas arenae

ncbi_submitter: Netherlands Institute of Ecology


ncbi_country: USA: New Jersey

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belgium

ncbi_isolation_source: Vaginal-rectal

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_strain_identifiers: MKDF 103

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Luedinghausen


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China: Yunnan

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: China

ncbi_isolation_source: nasopharyngeal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: Lino Lakes; MN

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Dye pond

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: SEAPHAGES, University of Lagos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Tang lab


ncbi_country: USA: MD

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: US Food and Drug Administration


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Neomoorella humiferrea

ncbi_submitter: Research Center of Biotechnology


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: rectal swabs

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhengzhou university


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter aurantiacus

ncbi_submitter: Dongguk University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Nocardioides sp. Root614

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Pittsburgh


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: SAHMRI


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC018955

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Sedimenticola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Streptomyces massasporeus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_submitter: Wayne State University


ncbi_organism_name: Mycobacterium seoulense

ncbi_submitter: Affiliated Dongyang Hospital of Wenzhou Medical University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Peking

ncbi_isolation_source: Hair cutting kit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Medical University


ncbi_organism_name: Proteus sp. G2675

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2675


ncbi_country: Antarctica

ncbi_isolation_source: grinding whole Antarctic krill

ncbi_organism_name: Planococcus alpniumensis

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: India: Gujarat

ncbi_isolation_source: Formation water sample from Viraj GGS

ncbi_organism_name: Dictyoglomus thermophilum

ncbi_submitter: Agharkar Research Institute


ncbi_country: USA: South Carolina; Savannah River National Laboratory

ncbi_isolation_source: Chromium Contaminated Subsurface Sediment

ncbi_organism_name: Cellulomonas sp. ES6

ncbi_submitter: New Mexico Institute of Mining and Technology


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: River sediment

ncbi_organism_name: Mycobacterium dioxanotrophicus

ncbi_submitter: Rice University


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6387

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Denmark: Vigerslev

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EBI


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: Germany

ncbi_isolation_source: CF lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_organism_name: Enterococcus viikkiensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Gemella morbillorum

ncbi_submitter: EMG


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: South Korea: Chungcheongnam-do

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Prevotella sp. UBA7115


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Guanba

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Bifidobacterium sp. B4111

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: Ear infection

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: CDC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Acidovorax sp. Leaf191

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Denmark

ncbi_isolation_source: cloaca content

ncbi_organism_name: Aliarcobacter thereius

ncbi_submitter: Ghent University


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7120-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_assembly_name: Rumen uncultured genome RUG14873

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus sanguinis


ncbi_organism_name: Chitiniphilus shinanonensis

ncbi_submitter: Lab of Bio-molecular and Gene technology Institute of Biotechnology and Environment, Tay Nguyen University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Rhodovulum kholense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Helicobacter pylori SA251C

ncbi_submitter: MHH


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Culiacan River; Puente Negro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: Malaysia: Johor

ncbi_isolation_source: wound swab from ulcer

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_country: Bulgaria

ncbi_isolation_source: Tracheobronchial aspirates

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antwerpen


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: India

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus sp. CRN 9

ncbi_strain_identifiers: CRN 9

ncbi_submitter: CSIR- National Environmental Engineering Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CRN 9


ncbi_assembly_name: freshwater MAG --- MJ130617A_bin-107

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Aarhus University


ncbi_country: Germany: Muenster

ncbi_isolation_source: anorectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University Hospital Muenster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: CA

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N26625


ncbi_country: China: Shanghai

ncbi_isolation_source: Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Aalborg University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Trichocoleus sp. FACHB-46

ncbi_submitter: South China Normal University


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: SPRUCE 251

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 251

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces sp. MB22_4

ncbi_submitter: USDA-ARS


ncbi_assembly_name: freshwater MAG --- Loclat_bin-19288

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_strain_identifiers: Pik

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_organism_name: Subdoligranulum sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: Saint-Louis Hospital


ncbi_submitter: Universidad de Chile


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhodobacter sp.


ncbi_organism_name: Neisseria sp. P0004.S003

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin15

ncbi_submitter: JAMSTEC


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Patescibacteria group bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: BZR 597

ncbi_submitter: Institute Cytology and Genetics SB RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: UNIFESP


ncbi_organism_name: Streptomyces sp. NPDC094448

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: PAR


ncbi_country: China: Hengyang

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Veillonella parvula

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Trunk River; Woods Hole; Massachusetts

ncbi_isolation_source: microbial mat material from brackish estuary

ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Department of Biology, Washington University in St. Louis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: Kandalaksha Bay; Trekhtsvetnoe Lake

ncbi_isolation_source: lake water chemocline zone

ncbi_organism_name: Chlorobium phaeovibrioides

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_isolate: Klebsiella pneumoniae

ncbi_isolation_source: Human

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: Instituto de Salud Carlos III


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: USA: VA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Pseudomonas sp. EA_15y_Pfl2_R67

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal grab

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; San Pedro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Sandiego


ncbi_country: Belgium

ncbi_isolation_source: Ropy beer

ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: Ghent University


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH43

ncbi_submitter: University of Alaska Fairbanks


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces galilaeus

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Corynebacterium freneyi


ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: Sea surface microlayer

ncbi_organism_name: Maribacter sp. 4G9

ncbi_submitter: The University of Tokyo


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis PM221

ncbi_submitter: BGI


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Russia: Saratov

ncbi_organism_name: Escherichia coli

ncbi_submitter: RARI


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: South Korea: Mokpo

ncbi_isolation_source: Jeotgal

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh