ncbi_isolation_source: collective feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_level: Scaffold

ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 209 (4-3062651)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 209 (4-3062651)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Olsenella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: Canada: Lunenberg County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Rouxiella sp. WC2420

ncbi_submitter: Wellesley College


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Dietzia aurantiaca

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. TH13

ncbi_submitter: University of Alaska Fairbanks

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TH13


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus hirae

ncbi_strain_identifiers: P4 C A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Australia: Sydney

ncbi_submitter: The University of Sydney


ncbi_country: Viet Nam: Bac Kan Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Ramlibacter tataouinensis

ncbi_submitter: Chung-Ang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas sp. TH31


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Ryze

ncbi_submitter: National Chung Cheng University


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0612S

ncbi_submitter: Broad Institute


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: Caecum


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T52649


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella sp. R81

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: CBG Instituto Politecnico Nacional


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_isolation_source: Human feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Micromonospora sp. NPDC005553


ncbi_strain_identifiers: Bt Uniclon 01

ncbi_submitter: UFMG


ncbi_organism_name: Flavobacterium johnsoniae

ncbi_submitter: College of Resources and Environmental science


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolate: metabat2_pooled_metaflye.1920 MAG

ncbi_organism_name: Firmicutes bacterium CAG:94

ncbi_strain_identifiers: metabat2_pooled_metaflye.1920 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:94


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_country: Malaysia: Sg. Buloh

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of California Davis


ncbi_country: China: Shandong

ncbi_organism_name: Streptococcus sp. HF-1907

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Germany: Greifswald

ncbi_organism_name: Trichococcus sp.


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus sp. 2018110

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: Honey

ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: University of Valladolid


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_isolation_source: Arctic seawater

ncbi_organism_name: Bacillus sp. A053

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. A053


ncbi_organism_name: Bacillus sp. N13C7

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N13C7


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Frankiales bacterium


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Corynebacterium sp. KPL2004

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: Salmonella sp. 741265118_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: whole body

ncbi_organism_name: Buchnera aphidicola (Aphis glycines)

ncbi_strain_identifiers: BAg

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWB1_35_20


ncbi_country: China: Beijing

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Salmonella sp. NW954

ncbi_submitter: Sichuan University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Shewanella algae

ncbi_submitter: Toho University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pedobacter sp. KBW06

ncbi_submitter: Tufts University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Terricaulis sp.

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada

ncbi_isolation_source: Clam

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: UCM


ncbi_organism_name: uncultured Acidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: GA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_strain_identifiers: Nishi

ncbi_submitter: Wadsworth Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Greece: Epirus

ncbi_isolation_source: raw sheep milk

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Legionella drozanskii LLAP-1

ncbi_refseq_category: reference genome

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: KAIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Chile: North side Aconcagua River estuary; Quintero

ncbi_isolation_source: soil sample

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Helicobacter pylori B8

ncbi_submitter: CeBitec, Bielefeld University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France

ncbi_isolation_source: Blood culture from a patient in France

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasisuis

ncbi_submitter: Wageningen University and Research


ncbi_country: South Korea

ncbi_isolation_source: Korean traditional fermented seafood (jeotgal)

ncbi_organism_name: Kocuria atrinae C3-8

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: India

ncbi_isolation_source: mucus

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Institute of Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3644

ncbi_submitter: University of Queensland


ncbi_organism_name: Cellulomonas biazotea

ncbi_submitter: Biotechnology, Univercity of Yamanashi


ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA044

ncbi_submitter: Broad Institute


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: The University of Queensland


ncbi_assembly_name: IMG-taxon 2708742469 annotated assembly

ncbi_organism_name: Sphingopyxis terrae subsp. ummariensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterococcus faecalis D811610-10

ncbi_submitter: The Genome Institute


ncbi_country: Colombia: Buenaventura

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Genomics Resource Center - University of Maryland


ncbi_country: United Kingdom: Exeter

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: University of Exeter


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Slackia exigua


ncbi_country: USA: Coeur d Alene; Idaho

ncbi_isolation_source: Sandy soil on a lake shoreline

ncbi_organism_name: Pseudomonas sp. JR33AA

ncbi_submitter: Illinois Wesleyan University


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Oman

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_assembly_name: Rumen uncultured genome RUG12106

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan: Kokkaido

ncbi_isolation_source: urine from a cow with cystitis

ncbi_organism_name: Corynebacterium cystitidis DSM 20524

ncbi_submitter: Bielefeld University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA: San Francisco; CA

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella rochalimae ATCC BAA-1498

ncbi_strain_identifiers: BMGH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Brazil: Porto Alegre

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWF2_52_12


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: actinobacterium SCGC AAA044-D11

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Dickeya zeae

ncbi_strain_identifiers: CFBP 2052

ncbi_submitter: NIVIP


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Catenibacterium faecis

ncbi_submitter: UIUC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: Bv Uniclon 07

ncbi_submitter: UFMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptomyces sp. NPDC102278

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Greenland: Kangerlussuaq

ncbi_isolation_source: soil sample line 2 60 ft from anomalous acidified pond located near a glacio-fluvial outwash plain

ncbi_submitter: Indiana University Bloomington


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: Austria: Burgenland; Neusiedlersee at Illmitz

ncbi_isolation_source: non-axenic culture deposited to culture collection

ncbi_submitter: Leibniz Institute DSMZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;x__Oscillatoriophycideae;o__Chroococcales;f__Gomphosphaeriaceae;g__Gomphosphaeria;s__Gomphosphaeria aponina;x__Gomphosphaeria aponina SAG 52.96 = DSM 107014


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: Little Rock; AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: Italy: Vercelli

ncbi_isolation_source: paddy soil amended with rice straw

ncbi_organism_name: Ignavibacteria bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolate: metabat2_XCR1_HOM_7868_bwa.81 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7868_bwa.81 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Nonomuraea sp. NPDC059023

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Zhuhai

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Jinan University


ncbi_country: Switzerland

ncbi_isolation_source: soil

ncbi_organism_name: Xenorhabdus aichiensis

ncbi_submitter: University of Neuchatel


ncbi_country: Turkey

ncbi_isolation_source: traditional yogurt 7

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: TSGB 4240

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 18439-17

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Tennessee


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterococcus faecalis 20-SD-BW-08

ncbi_submitter: The Genome Institute


ncbi_country: China: HangZhou

ncbi_isolation_source: activated sludge

ncbi_organism_name: Glutamicibacter sp. ZJUTW

ncbi_strain_identifiers: ZJUTW

ncbi_submitter: Zhejiang University of Technology


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Germany: Franfurt

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: cecal sample from slaughterhouse

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_submitter: University College Dublin


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1067

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces paradoxus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_organism_name: Bacillus sp. K-9.gyrB

ncbi_submitter: Heilongjiang Bayi Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. K-9.gyrB


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFOXYD1_FULL_42_11


ncbi_country: New Zealand: Manawatu-Wanganui

ncbi_isolation_source: potato samples

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Desulfovibrio intestinalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Rhodococcoides fascians

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Germany

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: uncultured Candidatus Peribacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river/lake

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus faecalis EnGen0326


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: ICU

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 190

ncbi_submitter: SC


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Burkholderia pseudomallei NCTC 13177

ncbi_submitter: NMRC


ncbi_country: Finland: Lake Saaskjarvi

ncbi_isolation_source: unialgal non-axenic culture; originally established from Lake Saaskjarvi; Finland in 1986

ncbi_organism_name: Anabaena sp. 54

ncbi_submitter: Oregon State University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces turgidiscabies


ncbi_organism_name: Shigella flexneri SFJ17B

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Solibacillus isronensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: South Australia

ncbi_organism_name: Rathayibacter toxicus


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-13

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh: Magura

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas oryzagri

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_assembly_name: Rumen uncultured genome RUG14668

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: Canada: near Kenora; Ontario; Lake 227; IISD-Experimental Lakes Area

ncbi_isolation_source: Ca. Chlorohelix allophototropha enrichment; subculture 1; a non-axenic enrichment culture of water from the upper anoxic zone (3.875 m depth) of a Boreal Shield lake

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Norway

ncbi_isolation_source: Wound secretion

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Deinococcus antarcticus

ncbi_strain_identifiers: CCTCC AB 2013263

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Calf

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: enriched from a lab-scale EBPR bioreactor

ncbi_organism_name: Candidatus Accumulibacter adjunctus

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter adjunctus


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lake water

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 79

ncbi_submitter: The Chinese University of Hong Kong


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Propionibacteriaceae bacterium Y1923

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Thessaly


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medicine Greifswald


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Azotimanducaceae bacterium


ncbi_organism_name: Pseudomonas sp. R11F

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_country: China: Yantai

ncbi_organism_name: Aeromonas salmonicida subsp. masoucida

ncbi_submitter: Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: La Jolla

ncbi_isolation_source: sample SPH; anode biofilm adapted to +100 mV

ncbi_organism_name: Geobacter sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_country: China: Changsha

ncbi_submitter: Xiangya hospital, Central South University


ncbi_country: Portugal

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-1199

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__environmental samples;s__uncultured Poribacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__unclassified Candidatus Methylacidiphilales;s__Candidatus Methylacidiphilales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical university of Denmark


ncbi_country: USA

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Antarctica

ncbi_isolation_source: marine sediment

ncbi_organism_name: Agrococcus sp. KRD186

ncbi_submitter: Robert Gordon University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: uncultured Saccharofermentans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: India: ICRISAT campus in Hyderabad

ncbi_isolation_source: compost [ENVO:00002170]

ncbi_organism_name: Streptomyces sp. CAI-24

ncbi_submitter: ICRISAT


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Malaysia: Johor

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Deakin University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: Magpie fecal

ncbi_strain_identifiers: Magpie fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: USA: Normal; IL

ncbi_isolation_source: Backyard garden soil

ncbi_organism_name: Pseudomonas sp. KCA11

ncbi_submitter: Illinois Wesleyan University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


gtdb_type_species_of_genus: t

ncbi_organism_name: Kosmotoga olearia TBF 19.5.1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Kosmotogales;f__Kosmotogaceae;g__Kosmotoga;s__Kosmotoga olearia;x__Kosmotoga olearia TBF 19.5.1


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Japan: Tokyo

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The University of Tokyo Hospital


ncbi_organism_name: uncultured Actinomycetaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangsu

ncbi_submitter: Yangzhou University


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina:Buenos Aires

ncbi_isolation_source: milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIDCA 133

ncbi_submitter: UFMG


ncbi_organism_name: Acinetobacter sp. 1130196

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 1130196


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: India: Jharkhand; Bokaro; Khetko

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_assembly_name: IMG-taxon 2724679731 annotated assembly

ncbi_organism_name: Rhodoblastus acidophilus

ncbi_strain_identifiers: DSM 137

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada

ncbi_isolation_source: surface water

ncbi_organism_name: Campylobacter novaezeelandiae

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University of Chicago


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: dianzhenduan


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter sp. R56

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: caecum

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: CT

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Umea_bin-02898

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. NPDC127061

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Salmonella sp. LSP 1142/03

ncbi_submitter: University of Oviedo


ncbi_organism_name: Streptomyces sp. NBC_00623

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Human feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_isolate: AOP5_B1_surf _bin _6

ncbi_organism_name: Microbacterium sp.

ncbi_strain_identifiers: AOP5_B1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: Polaromonas aquatica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Bohai Sea

ncbi_isolation_source: 42-44 cm sediment from station M3 in the Bohai Sea

ncbi_organism_name: bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Streptomyces sp. NPDC001678

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nonomuraea sp. NPDC049684


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Birmingham


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: University of Agriculture in Krakow


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Escherichia albertii B156

ncbi_submitter: Broad Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: Hartford; CT

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_organism_name: Halioxenophilus aromaticivorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Burkholderia oklahomensis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus cereus group sp. MYBK36-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK36-2


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Polaromonas sp. SP1

ncbi_submitter: Nakdonggang National Institute of Biological Resource


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_country: Nigeria

ncbi_isolation_source: Human Blood

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Jukestown


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: ProBiota Inc


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica


ncbi_assembly_name: Rumen uncultured genome RUG12969

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:New York; BronxPark

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolate: SPRUCE 99

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 99

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Thalassotalea profundi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_organism_name: Streptomyces mesophilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Sweden: Oresund

ncbi_isolation_source: Top-layer sediments

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: University of Gothenburg


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: near Kenora; Ontario

ncbi_isolation_source: Chlorobia sulfide enrichment from Lake 227; 6m depth

ncbi_organism_name: Chlorobium sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium SB90


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil:Bom Jesus do Amparo

ncbi_isolation_source: milk

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 40

ncbi_strain_identifiers: CHS 40

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 40


ncbi_organism_name: Shigella boydii

ncbi_submitter: Nankai University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Wunengus sp. YC64

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wunengus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wunengus;x__unclassified Candidatus Wunengus;s__Candidatus Wunengus sp. YC64


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: WHOW

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: WTSI


ncbi_isolation_source: oral

ncbi_organism_name: Campylobacter gracilis

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: Soil

ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: University of Dundee


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevibacterium sp. UBA7493

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: China: canal of Gangxia Village; Fuchi Town; Yangxin County; Huangshi City; Hubei Province

ncbi_isolation_source: silt at the roots of aquatic plants

ncbi_organism_name: Pantoea sp. XY16

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pantoea tagorei

ncbi_submitter: Visva-Bharati


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Denovo assembly

ncbi_country: India

ncbi_isolation_source: electroplating industrial effluent

ncbi_organism_name: Microbacterium sp. MRS-1

ncbi_submitter: Madurai Kamaraj University


ncbi_assembly_name: Rumen uncultured genome RUG10513

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia:coastal zone in the Dzhigit cove of Peter the Great Bay; Sea of Japan

ncbi_isolation_source: soil sample

ncbi_organism_name: Streptomyces sp. KMM 9044

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Telluria sp. Tellsp131

ncbi_submitter: North Carolina State University


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella sp. NW966

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Universite Paris-Saclay


ncbi_organism_name: Aeromicrobium sp. UC242_57

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Alcanivoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_submitter: FDA


ncbi_organism_name: Micrococcus antarcticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Genomik Solidaritas Indonesia


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG08_land_8_20_14_0_20_34_16


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Colistin

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Citrus sp.

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: South Korea

ncbi_isolation_source: Pork meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_assembly_name: Rickettsia tamurae AT-1

ncbi_organism_name: Rickettsia tamurae

ncbi_submitter: URMITE


ncbi_country: Viet Nam: Soc Trang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_country: Brazil: Ubatuba

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: EMG


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Pork cheeck

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA

ncbi_isolation_source: CSF isolate from a 1 month old infant with meningitis

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Canada: Alberta

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Bacterial and Parasitic Diseases Research Division, National Institute of Animal Health


ncbi_organism_name: Streptococcus pyogenes ABC020015292

ncbi_submitter: Broad Institute


ncbi_organism_name: Paenibacillus odorifer


ncbi_country: China: Guangxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nocardia grenadensis

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia: Chechnya

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces zaomyceticus


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- AM-sed-core1-D1_bin-136

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium OSCR and associated heterotrophs

ncbi_organism_name: Saliniramus fredricksonii

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: WA

ncbi_isolation_source: environment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: South China Agricultural University


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Leptospira santarosai str. 2000027870

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: SC

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Legionella hackeliae


ncbi_country: South Korea: Dokdo Island

ncbi_organism_name: Flagellimonas eckloniae

ncbi_strain_identifiers: DOKDO 007

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bdellovibrio sp. ZAP7

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Segatella copri

ncbi_submitter: UIUC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: abscess right neck

ncbi_organism_name: Lactobacillus sp. HMSC077C11

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Germany: Stuttgart

ncbi_organism_name: Pseudonocardia parietis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Singapore

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Singapore Streptococcus agalactiae working group


ncbi_country: Tanzania

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium EnGen0036

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China:Henan; Zhengyang

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Aeromonas media

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: South China Normal University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Gemella sp. GH3

ncbi_submitter: King's College London


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Enterococcus raffinosus ATCC 49464

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: USA: Boston

ncbi_isolation_source: URINE

ncbi_organism_name: Escherichia coli BIDMC 64

ncbi_strain_identifiers: BIDMC 64

ncbi_submitter: Broad Institute


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Italy: Ancona

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Pseudorhodobacter sp. PARRP1

ncbi_submitter: CNRS-AMU


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Antarctica:King George Island

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas mandelii

ncbi_submitter: Istanbul Technical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1641 from squamous cell carcinomas patient MST029

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_isolation_source: Cecal contents

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Florida

ncbi_isolation_source: Florida Keys

ncbi_organism_name: Kangiella spongicola

ncbi_strain_identifiers: ATCC BAA-2076


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7055


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Raoultella sp. Lac2

ncbi_submitter: Shenzhen University


ncbi_isolation_source: Biondi; Emanuele (Universita di Firenze)

ncbi_organism_name: Sinorhizobium meliloti AK83

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Russia: Moscow

ncbi_isolation_source: Gall bladder

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Streptomyces sp. NPDC052721

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lambayeque

ncbi_organism_name: Streptomyces sp. CS065A

ncbi_submitter: Universidad de Oviedo


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: USA: Minnesota

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Systems Biology


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: Hubei University


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Princeton University


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Qipengyuania flava


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia sp. CC227C

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Halomonas caseinilytica

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 31

ncbi_submitter: SC


ncbi_country: Pakistan: Kohinoor Mills; Islamabad

ncbi_isolation_source: Textile dyeing wastewater treatment pond

ncbi_organism_name: Acinetobacter bohemicus

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Tajikistan: Tursunzoda

ncbi_isolation_source: plant fruit

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Bergen


ncbi_country: Italy: Sardinia; Monti

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_country: France: Coast of Arcachon Bay

ncbi_organism_name: Shewanella algae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France

ncbi_isolation_source: reactal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Russia: Uzhno-Sakhalinsk

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_country: USA: Utah

ncbi_organism_name: Xanthomonas graminis pv. poae

ncbi_submitter: The Connecticut Agricultural Experiment Station

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. poae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_country: Estonia: Viljandimaa; Viiratsi

ncbi_isolation_source: manure

ncbi_organism_name: Enterococcus faecium


ncbi_country: Belgium: Univ. Bruxelles

ncbi_organism_name: Enterococcus faecalis EnGen0116

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_isolation_source: skin

ncbi_submitter: University of Iowa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Sciensano


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: Sewer

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: KAIST


ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V11_P1A41T118

ncbi_submitter: Instituto de ecologia


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1062314

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus swezeyi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Antarctica: Wright Valley; E4; Lake Canopus; McMurdo

ncbi_isolation_source: cyanobacterial mat sample of Antarctic lake

ncbi_organism_name: Planococcus antarcticus DSM 14505

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;s__Planococcus antarcticus;x__Planococcus antarcticus DSM 14505


ncbi_organism_name: Limisphaerales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Chile: Reloncavi Estuary

ncbi_isolation_source: Atlantic salmon

ncbi_organism_name: Streptococcus phocae subsp. salmonis

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: EMG


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces