ncbi_country: Australia

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Nigeria

ncbi_genome_representation: full

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety


gtdb_representative: t

ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Sphingopyxis sp. L1A2A

ncbi_submitter: University of Trento


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Scaffold

ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: geothermally-influenced stream

ncbi_organism_name: Fischerella thermalis WC527

ncbi_submitter: University of Montana


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Terrisporobacter othiniensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_country: USA

ncbi_isolation_source: Endocarditis patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Vaccine response strain

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: South Africa: Capetown

ncbi_isolation_source: flocculating fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_submitter: Makerere University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: JCVI


ncbi_assembly_name: Rumen uncultured genome RUG11102

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_type_species_of_genus: t

ncbi_country: USA: California

ncbi_isolation_source: soil sample

ncbi_organism_name: Couchioplanes caeruleus subsp. caeruleus

ncbi_submitter: University College Dublin

ncbi_type_material_designation: assembly from type material


ncbi_country: China

ncbi_isolation_source: 2-3 butanediol fermentation

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: RI

ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-014588


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Myopa testacea


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MA

ncbi_isolation_source: nostril

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Canada: Manitoba

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes ihumii

ncbi_submitter: EMG


ncbi_country: USA: Lynn; Alabama

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces scopuliridis RB72

ncbi_submitter: University of Alabama


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Seattle

ncbi_isolation_source: wound right shoulder skin non-operative

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: USA: Ohio; Columbus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: SPRUCE 30

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SPRUCE 30

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_organism_name: Pseudomonas sp. MPR-AND1B

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_assembly_level: Chromosome

ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: USA: Texas

ncbi_isolation_source: Beef Cattle Feces - Rectal Grab

ncbi_submitter: USDA-ARS


ncbi_country: USA: Michigan

ncbi_isolation_source: Cecal Contents

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_refseq_category: reference genome

ncbi_submitter: University of Parma


ncbi_country: Spain

ncbi_isolation_source: fecal sample from zoo

ncbi_organism_name: Bifidobacterium pluvialisilvae


ncbi_organism_name: Kribbella qitaiheensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lentilactobacillus otakiensis

ncbi_submitter: Novonesis A/S


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Marinobacter sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Actinomyces graevenitzii


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Lactobacillus sp. 23-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile P74

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Germany: near Stuttgart

ncbi_isolation_source: soil

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Fraunhofer IGB


ncbi_country: Morocco

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM N51272 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Bartonella mastomydis

ncbi_submitter: URMITE


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Rostock University Medical Center


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp4 AA25

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp4 AA25

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Aeribacillus composti

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: City University of Hong Kong


ncbi_country: Japan:Yamagata;Niibori Oilfield

ncbi_isolation_source: Niibori oilfield

ncbi_organism_name: Koleobacter methoxysyntrophicus

ncbi_submitter: University of Tsukuba


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: International Medical Education and Research Center


ncbi_isolation_source: Colon

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University at Buffalo


ncbi_assembly_name: Rumen uncultured genome RUG11130

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Clostridium tertium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-018

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Pacific Coast

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_submitter: University of Wyoming


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Lysobacter stagni

ncbi_submitter: Dongguk University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: kunming

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Simplicispira sedimenti

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_country: Norway

ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: NTNU


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Yangzhou

ncbi_isolation_source: pork from retail market

ncbi_organism_name: Enterobacter sp. M607

ncbi_submitter: YangZhou university


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Florida

ncbi_isolation_source: Uterine swab from cow 29776

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Florida


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides ilei

ncbi_submitter: EMG


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_country: China: Yunnan Province

ncbi_isolation_source: river water

ncbi_organism_name: Vogesella margarita

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Rhodoblastus sp.


ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Nizhny Novgorod

ncbi_isolation_source: urogenital tract

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Blokhina Research Institute of Epidemiology and Microbiology, Nizhny Novgorod, Russia


ncbi_country: China: Xinjiang

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: IMG-taxon 2596583543 annotated assembly

ncbi_organism_name: Pseudobutyrivibrio sp. AR14

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Austria: Salzburg; Hellbrunner creek

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Rhodoluna limnophila

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Tang lab


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Solobacterium moorei

ncbi_submitter: Keio University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: blood of a patient with bacteraemia of unknown origin

ncbi_organism_name: Corynebacterium gottingense

ncbi_submitter: Uni Bielefeld


ncbi_country: Sri Lanka

ncbi_organism_name: Pasteurella multocida 93002

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Mycobacterium tuberculosis TRS18

ncbi_submitter: Vanderbilt University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: ganjang; Korean traditional soy sauce

ncbi_organism_name: Idiomarinaceae bacterium

ncbi_submitter: Chung-Ang Univiersity


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Third People's Hospital of Yancheng City


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: VTEC+

ncbi_submitter: Vircell S.L.


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Flavobacterium macrobrachii

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gordonibacter urolithinfaciens


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Kyungpook National Univeristy


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: RMIT UNIVERSITY


ncbi_organism_name: Mycoavidus cysteinexigens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycoplana azooxidifex


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: JCVI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Coldstream; Victoria

ncbi_isolation_source: Rural River

ncbi_organism_name: Campylobacter volucris

ncbi_submitter: Monash University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Sink swab

ncbi_organism_name: Serratia nevei


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus spizizenii DV1-B-1

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus spizizenii;x__Bacillus spizizenii DV1-B-1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio atlanticus

ncbi_submitter: University of Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_assembly_name: IMG-taxon 2585428105 annotated assembly

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Corynebacterium vitaeruminis

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: South Korea: Geumho River

ncbi_organism_name: Kaistia geumhonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0806

ncbi_submitter: Broad Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Desulfosudaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 70 days

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Friedrich Schiller University Jena


ncbi_isolation_source: spontaneous mutant of Mycolicibacterium smegmatis ATCC 19420 with increased resistance to lupulone

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Aberystwyth University


ncbi_organism_name: Mesorhizobium montanum

ncbi_submitter: University of Pretoria


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Salmonella enterica CVM 43829 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Enterococcus faecium EnGen0321


ncbi_organism_name: Nonomuraea soli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium GW2011_GWD2_35_24


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiangsu

ncbi_isolation_source: gallbladder

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 30 PSU in less than .8 micron size fraction

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA: Florida keys

ncbi_isolation_source: Sponge from waters off Florida keys

ncbi_organism_name: Rhodococcus sp. WMMA185

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. WMMA185


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: peat soil sample

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: AIMST University


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Ureaplasma;s__Ureaplasma parvum;x__Ureaplasma parvum serovar 3;x__Ureaplasma parvum serovar 3 str. ATCC 27815


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: IMG-taxon 2593339255 annotated assembly

ncbi_organism_name: Ruminococcaceae bacterium D5

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: China: Shaoguan

ncbi_organism_name: Austwickia chelonae

ncbi_submitter: Guangdong Institute of Applied Biological Resources


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Mannheimia indoligenes

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia marasmi

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Moraxellaceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Neisseria sp.


ncbi_country: Lebanon: North

ncbi_isolation_source: environmental

ncbi_submitter: Paris Saclay University


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria sicca

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Thermoactinomyces sp. FSL K6-2592

ncbi_submitter: Penn State


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA88

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: water

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_assembly_name: Rumen uncultured genome RUG13572

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidaminococcus sp.


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira montravelensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Microbacterium aurantiacum

ncbi_strain_identifiers: VKM Ac-2075

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Laboratoire de Microbiologie. University hospital Sahloul


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Psychrobacter sp. AOP22-C2-15

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Emticicia sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Rosistilla oblonga

ncbi_submitter: Ocean University of China


ncbi_organism_name: Paenirhodobacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: University of British Columbia


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Blastocatellia bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: EMG


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eggerthella sp. BIOML-A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Michigan State University


ncbi_country: China

ncbi_organism_name: Bailinhaonella thermotolerans

ncbi_submitter: Yunnan institute of microbiology


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: United Kingdom: Weybridge

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. fetus;x__Campylobacter fetus subsp. fetus BT 10/98


ncbi_organism_name: Longimonas sp.

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_country: China: Conghua

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA47760

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: Nottingham Trent University


ncbi_country: Costa Rica

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_strain_identifiers: CFBP 8129

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_organism_name: Streptomyces sp. SP18BB07

ncbi_submitter: Washington University in St. Louis


ncbi_country: Italy: Lecco

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: coastal surface seawater of the Yellow Sea

ncbi_organism_name: Celeribacter marinus

ncbi_submitter: Pukyong National University


ncbi_country: India

ncbi_organism_name: Burkholderia cenocepacia


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Wuhan Institute Of Virology, Chinese Academy Of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: Wound swab

ncbi_submitter: University of Malaya


ncbi_organism_name: Trichormus variabilis A2

ncbi_submitter: South Dakota State University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0244R

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPLOWO2_01_FULL_44_24b


ncbi_organism_name: Bellilinea sp.

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: respiratory culture

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Tokyo Medical And Dental University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R192;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Bulgaria

ncbi_strain_identifiers: Nikolaevo

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Bulgarica;x__Leptospira kirschneri serovar Bulgarica str. Nikolaevo


ncbi_organism_name: Brucella pseudintermedia

ncbi_strain_identifiers: CB

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Gulosibacter molinativorax

ncbi_submitter: Biocant


ncbi_organism_name: Gemmobacter aquaticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Thermus thermophilus

ncbi_submitter: CBMSO


ncbi_country: China: Xinjiang

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: Russia

ncbi_isolation_source: healthy person

ncbi_submitter: Kingston Uniiversity


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom: England; Gloucester

ncbi_organism_name: Chryseobacterium nakagawai

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chelatococcus reniformis


ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Australia: Brisbane

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolate: AOP5_CZ1_surf _bin _17

ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5324

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5324


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: University of Cadiz


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolate: AOP35_01H_surf _bin _35

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP35_01H_surf _bin _35


ncbi_organism_name: Lysobacter soli

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Michigan State University


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12243

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Georgia

ncbi_isolation_source: Beef

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: National Center for Disease Control and Public Health (NCDC) of Georgia


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARUL UNIVERSITY


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolate: ATA bin13

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: ATA bin13

ncbi_submitter: Monash University


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France

ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Mexico: Janos Biosphere Reserve

ncbi_isolation_source: blood sample

ncbi_organism_name: Bartonella sp. CDC_skunk

ncbi_submitter: University of Basel


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China

ncbi_organism_name: Shouchella hunanensis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Candidatus Niyogibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Niyogiibacteriota;x__unclassified Candidatus Niyogibacteria;s__Candidatus Niyogibacteria bacterium


ncbi_country: Peru:Ascope; Chicama; Sausal

ncbi_organism_name: Yersinia pestis PY-102

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Fudan University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Ghana

ncbi_isolation_source: river water

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Lentilactobacillus parakefiri

ncbi_submitter: National Agriculture and Food Research Organization, Institute of Livestock and Grassland Science


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcaceae bacterium

ncbi_submitter: TEAGASC FOOD RESEARCH CENTRE


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces sp. XM4193

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium keratanolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Paramuribaculum sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_organism_name: Campylobacter sputorum subsp. bovis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Antarctica: the Ross Sea

ncbi_organism_name: Pseudidiomarina gelatinasegens

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Nonomuraea sp. CA-141351

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Wuhan

ncbi_isolation_source: freshwater algae Reservoir; Chinese Academy of Sciences

ncbi_organism_name: Gemmobacter fulvus

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: China: Liaoning; Shenyang City; Xi River

ncbi_isolation_source: river sediment; 111TCA-dechlorinating enrichment culture

ncbi_organism_name: Dehalobacter sp.

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Thioalkalivibrio sp. AKL12


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Saccharothrix longispora

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0067

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: USA:Ohio; Cleveland

ncbi_organism_name: Helicobacter pylori Hp M1

ncbi_strain_identifiers: Hp M1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: HN 16

ncbi_submitter: Shihezi University


ncbi_organism_name: Bianqueaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Seoul National University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4306

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Paraburkholderia sp. DD10

ncbi_submitter: Laboratoire de Recherche en Sciences Vegetales


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Candidatus Faecivicinus avistercoris

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;s__Candidatus Faecivicinus avistercoris


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Asaia bogorensis

ncbi_submitter: Biology Centre CAS


ncbi_country: South Korea: Gunsan

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Marinobacter salinus

ncbi_submitter: Jeju National University


ncbi_country: China: Muchuan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: leshan normal univwesity


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Peptoniphilus sp.


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Caproiciproducens sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Baltimore; MD

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: IGS


ncbi_organism_name: Myxococcaceae bacterium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Monash University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Colorado School of Mines


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Galway


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Ruminococcus flavefaciens MA2007

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: saliva

ncbi_organism_name: Lachnoanaerobaculum orale

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: University of Oslo


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce

ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: University of Wyoming


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Hangzhou Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Cerasicoccus maritimus

ncbi_submitter: Xiamen University


ncbi_organism_name: Parvimonas micra

ncbi_submitter: EMG


ncbi_organism_name: Pseudarthrobacter siccitolerans

ncbi_submitter: University of Granada


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2634166308 annotated assembly

ncbi_organism_name: Ignavigranum ruoffiae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG13855

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: SysMilk


ncbi_country: South Korea: Changwon

ncbi_isolation_source: human skin

ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: Changwon National University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Thermoguttaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Roseateles chitosanitabidus

ncbi_submitter: UNESP-FCAV


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: University of Malaya


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well (0.1 _m fraction)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Gr01-1014_31


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: Karolinska Institute

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Lichen

ncbi_organism_name: Actinomycetospora sp. NBRC 106378

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Aeromonas jandaei

ncbi_strain_identifiers: WA

ncbi_submitter: University of Georgia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: shri Alpesh N. Patel Post Graduate Institute of Science & Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: University of Florida


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1059

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Methylorubrum aminovorans


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Mycobacterium shigaense

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Japan: Horonobe URL

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium HGW-Bacteroidetes-13


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Germany: Goettingen

ncbi_isolation_source: abdominal drainage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Medical Center Goettingen


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Suzhou

ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Canada: King City; ON

ncbi_isolation_source: soil at Joker s Hill

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bard College


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: Thuringia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIBNOR


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0586

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_country: China: Tengchong

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermalbibacter longus

ncbi_submitter: Xinxiang Medical University


ncbi_isolation_source: aquatic

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Parabacteroides merdae ATCC 43184

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae;x__Parabacteroides merdae ATCC 43184


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Acetofilamentum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Torino

ncbi_isolation_source: Respiratory sample

ncbi_submitter: University of Genoa


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium RIFOXYD12_FULL_48_21


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Kosmotoga pacifica

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bizionia paragorgiae

ncbi_submitter: Ocean University of China


ncbi_country: Netherlands

ncbi_organism_name: Enterococcus faecium EnGen0041

ncbi_submitter: Broad Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_submitter: Toho University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Czech Republic

ncbi_isolation_source: wastewater

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Battelle Memorial Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar toumanoffi


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-10

ncbi_submitter: Curtin University


ncbi_country: Tanzania: KIGOMA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Gardnerella greenwoodii

ncbi_submitter: Drexel University College of Medicine


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0058


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Queensland


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: water

ncbi_organism_name: Vibrio sp. 2-2(9)

ncbi_submitter: IMR


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Sphingobium sp.


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tsinghua University


ncbi_assembly_name: Rumen uncultured genome RUG12780

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rhodococcus triatomae

ncbi_submitter: University of Georgia


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: India: Gujarat; Jungadh

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Junagadh Agricultural University, Junagadh


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Prevotella sp. UBA1705


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Israel: Jerusalem

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Wisconsin

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pectobacterium parvum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_assembly_name: Rumen uncultured genome RUG11955

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China

ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_organism_name: Timonella senegalensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: LABEO


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: IMG-taxon 2663762754 annotated assembly

ncbi_organism_name: Cryobacterium levicorallinum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Porphyromonas catoniae

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Comoros

ncbi_submitter: University of Bath


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: Cellulomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Priestia megaterium

ncbi_submitter: University Laval


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_isolate: metabat2_coassembly_bwa.447 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.447 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Institute of Food Technology Entrepreneurship & Management

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: RWTH Aachen University Hospital

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salinispira pacifica

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: City University of Hong Kong


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_country: Spain: Mallorca

ncbi_isolation_source: Leaf petiole

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: Streptomyces sp. NPDC088740

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolate: CON1 bin13

ncbi_strain_identifiers: CON1 bin13

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Kazan

ncbi_organism_name: Brevibacterium epidermidis

ncbi_submitter: Kazan (Volga Region) Federal University


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mannheimia haemolytica

ncbi_strain_identifiers: 2969MH;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Japan

ncbi_organism_name: Lawsonia intracellularis

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: STB-E

ncbi_organism_name: Mycobacterium canettii CIPT 140070002

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070002


ncbi_organism_name: Methylobacter sp. Wu1

ncbi_submitter: Biology Centre CAS


ncbi_country: Canada: Shelburne County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: Philadelphia

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_submitter: National Institute of Health


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Saint Louis; MO

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: laboratory

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Science College, Shantou University


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Actinomyces oris


ncbi_organism_name: Henriciella pelagia

ncbi_submitter: Xiamen University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces parvus


ncbi_country: China: Tianjin

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas sp. CP-1

ncbi_submitter: Harbin Institute of Technology


ncbi_country: Japan: Kaichu-doro beach; Okinawa

ncbi_isolation_source: tidal marine sediment

ncbi_organism_name: Thalassospira sp. HJ

ncbi_strain_identifiers: HJ

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_country: United Kingdom

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas media

ncbi_submitter: Institut d'Investigacio Biomedica Sant Pau


ncbi_organism_name: uncultured Muribaculaceae bacterium