ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_level: Contig

ncbi_country: China: Guangdong; Daobaoshan

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sediment

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 1 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: The Johns Hopkins University Applied Physics Laboratory


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


gtdb_representative: t

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Russia: Elista

ncbi_isolation_source: river water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: University of Turku

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Neisseria sicca

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Switzerland

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Neisseria cinerea

ncbi_refseq_category: reference genome

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Flavobacterium ardleyense

ncbi_submitter: Qilu University of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: USA: MT

ncbi_isolation_source: Dodecantheon pulchellum

ncbi_organism_name: Pseudomonas syringae CC1466

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae CC1466


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPLOWO2_12_FULL_47_9b


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Sweden

ncbi_isolation_source: trachea

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_isolation_source: meat

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Guangxi Province

ncbi_isolation_source: infected rice leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Poland: Krakow

ncbi_isolation_source: skin lesions

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Jagiellonian University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bifidobacterium longum CAG:69

ncbi_submitter: DTU


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Stockholm University


ncbi_country: Papua New Guinea

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus clarus

ncbi_strain_identifiers: BHP

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Erken-D9_bin-0067

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: SC


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-316-03_S3_C2

ncbi_submitter: IGS


ncbi_country: USA

ncbi_isolation_source: bile

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea: Pyeongtaek

ncbi_isolation_source: large intestine

ncbi_organism_name: Clostridium vitabionis

ncbi_submitter: KRIBB


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Streptomyces uncialis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC057699


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Helsinki


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Salmonella sp. NW662

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: Streptomyces pseudovenezuelae


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: anammox sludge collected from membrane bioreactor

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university


ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mucus

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: San Francisco

ncbi_isolation_source: wound

ncbi_organism_name: Neisseria sp. 83E34

ncbi_submitter: UCSF


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.


ncbi_country: Gambia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Germany: Jena

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: India: Vellore

ncbi_isolation_source: feeces

ncbi_organism_name: Shigella sp. FC2928

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Emcibacter sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Peking University School of Stomatology


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfuromonadaceae bacterium UBA5613

ncbi_submitter: University of Queensland


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: hunting bait based on fox urine

ncbi_organism_name: Erysipelothrix urinaevulpis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Singapore

ncbi_isolation_source: Fresh-cut apple

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_organism_name: Microbacterium sp. STF-2

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-191

ncbi_submitter: Broad Institute


ncbi_country: India: Uttar Pradesh; Aligarh

ncbi_isolation_source: Sewage water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Aligarh Muslim University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0551

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: marine

ncbi_organism_name: Marinobacter nauticus


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: blood

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Canada: Hamilton

ncbi_isolation_source: endotrachial aspirate from ICU patient

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: McMaster University


ncbi_organism_name: Croceitalea sp. P059

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: MD

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: DMB SH20103

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Serratia sp. CY34543

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY34543


ncbi_organism_name: Lautropia dentalis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 193 (4-3331423)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 193 (4-3331423)


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Piscirickettsiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: WA

ncbi_isolation_source: intestine mink mustelidae

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: muscle


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseivirga sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Burkholderia sp. LMG 13014

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: South Korea

ncbi_isolation_source: dried fermented soybeans (Meju)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_assembly_name: Rumen uncultured genome RUG10368

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Antarctica: King George Island; Antarctic Peninsula

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas sp. PAMC 26818

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ethiopia: Amhara; East Gojjam

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- KT_bin-1677

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Australia: Victoria

ncbi_isolation_source: blood

ncbi_submitter: The University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Rhizobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Evtepia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: uncultured Propylenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Salmonella sp. NW85

ncbi_submitter: Sichuan University


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Streptomyces massasporeus


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella sp. 741265125_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Costa Rica

ncbi_isolation_source: marinated raw chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: INCIENSA


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ohio

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2667527408 annotated assembly

ncbi_organism_name: Acetanaerobacterium elongatum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: New York City

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche Togo Rosati


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 8

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_country: Uzbekistan

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Academia Sinica


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: WA

ncbi_organism_name: Moraxella canis

ncbi_submitter: University of Washington


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pediatric Ward

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA

ncbi_submitter: University of Tennessee


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_country: South Korea: Ganghwa

ncbi_isolation_source: Stem of infected pepper plant

ncbi_organism_name: Clavibacter capsici

ncbi_submitter: KyungHee University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA1802

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: University of Copenhagen


ncbi_isolate: metabat2_6755_HET_CTRL_hifiasm.331 MAG

ncbi_organism_name: Bifidobacterium pullorum

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_hifiasm.331 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_country: USA: CA

ncbi_isolation_source: rectum calamian deer cervidae

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bdellovibrionaceae bacterium UBA7794


ncbi_country: South Africa

ncbi_isolation_source: Cattle farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: North-West University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Henriciella sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Omnitrophica bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__environmental samples;s__uncultured Omnitrophica bacterium


ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_country: Australia: Shark Bay WA

ncbi_isolation_source: Stomatolites grown in far red light (720nm)

ncbi_organism_name: Halomicronema hongdechloris C2206

ncbi_submitter: Macquarie University


ncbi_organism_name: uncultured Salinicola sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Litoreibacter sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_country: Italy

ncbi_isolation_source: Pus

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_country: USA: PA

ncbi_isolation_source: dairy cow feces

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Sporosarcina sp. Marseille-Q4943

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: bile acid of cholelithiasis patient

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: shandong University


ncbi_organism_name: Oceanobacillus sp. FSL W7-1309

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Oceanobacillus;x__unclassified Oceanobacillus;s__Oceanobacillus sp. FSL W7-1309


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Phormidium sp. BM_Day4_Bin.17

ncbi_submitter: University of Calgary


ncbi_country: Spain: Madrid

ncbi_isolation_source: blood

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Germany

ncbi_isolation_source: Joint puncture

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolate: blood

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: India: Chennai

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Karolinska Insitutet


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Blood


ncbi_organism_name: Xanthobacteraceae bacterium 501b

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: Marine sponge tissue

ncbi_organism_name: BD1-7 clade bacterium

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA


ncbi_organism_name: Clostridium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: California

ncbi_isolation_source: hen s egg

ncbi_organism_name: Pseudomonas [fluorescens] ATCC 17400

ncbi_submitter: Vrije Universiteit Brussel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas proteolytica;x__Pseudomonas [fluorescens] ATCC 17400


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Soft tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University Hospital


ncbi_country: USA: Alabama

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Auburn University


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Furfurilactobacillus entadae

ncbi_submitter: Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_organism_name: Xylanibacter rarus


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Vibrio sp. MA40-2

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Citromicrobium sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: JF

ncbi_submitter: Chinese Academy of Agriculture Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Rahnella sp. PCH160

ncbi_submitter: CSIR-IHBT PALAMPUR


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: WA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Chicago


ncbi_isolation_source: spacecraft hardware

ncbi_organism_name: Bacillus sp. V33-4

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. V33-4


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Moraxella sp. E33BD

ncbi_submitter: China Agricultural University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Sphingopyxis alaskensis


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Colombia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: INRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S31

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhejiang; Ningbo

ncbi_isolation_source: Shuangpantu aquacultural pond

ncbi_organism_name: Marinobacter sp. YWL01

ncbi_submitter: Ningbo University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Canada: Alberta

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfuromonas acetoxidans DSM 684

ncbi_strain_identifiers: DSM 684

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Quanzhou; Fujian

ncbi_isolation_source: pyogenic fluids

ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: The First Quanzhou Hospital


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Buchnera aphidicola (Pentalonia nigronervosa)

ncbi_submitter: International Institute of Tropical Agriculture


ncbi_organism_name: Tabrizicola piscis

ncbi_submitter: Kyung Hee University


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Poland: Warszawa

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Recirculating aquaculture system

ncbi_organism_name: Salaquimonas pukyongi

ncbi_submitter: Pukyong National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Schaedlerella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Nigeria

ncbi_submitter: Cepheid


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human isolate

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 439

ncbi_submitter: Brigham Young University


ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Arkansas

ncbi_isolation_source: shrimp

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: Faeces

ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: traditional Korean fermented food; jeotgal

ncbi_organism_name: Carnobacterium jeotgali

ncbi_submitter: Kyung Hee University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_country: Panama: Boco del Toro

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO2B9

ncbi_submitter: UCSD


ncbi_organism_name: Thioalkalivibrio sp. AKL10

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 1

ncbi_organism_name: Marinisporobacter sp.

ncbi_submitter: University of Florida


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: TX; El Paso

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: Texas A&M university


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: BGI


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Avelusimicrobium faecicola

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Enterococcus sp. C9

ncbi_submitter: Northwest A & F University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Aggregatibacter aphrophilus F0387

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Qinling

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3835


ncbi_organism_name: Asaia astilbis JCM 15831

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: EMG


ncbi_country: China: Qinghai province

ncbi_organism_name: Corynebacterium sp. SY003

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shanghai

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Montreal


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Fastidiosipila sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ICHBFM


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyorin University Faculty of Medicine


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: University of British Columbia


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_assembly_name: De novo

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Universite Joseph KI-ZERBO


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Providencia sp. 2023EL-00965

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Japan: Chiba

ncbi_isolation_source: Water

ncbi_organism_name: Novosphingobium sp. KA1

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_assembly_name: Lactobacillus rhamnosus CECT 8800

ncbi_isolation_source: Vagina of healthy woman

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Ferring International Center S.A.


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Serbia

ncbi_isolation_source: white cow cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Molecular Genetics and Genetic Engineering, University of Belgrade


ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SS52

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: China: Jiangsu

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Alistipes communis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 401

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 2184

ncbi_submitter: University of Calgary


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: stream rock

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Zhejiang university


ncbi_country: Denmark

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: Spain: Barcelona; Hospital Universitari de Bellvitge

ncbi_isolation_source: adult patient with underlying chronic lung disease

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of British Columbia


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: India: Vellore

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Christian Medical College


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CSIR-Indian Institute of Toxicology Research


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri


ncbi_country: USA: New York; NY

ncbi_isolation_source: selected on BioAMS

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_organism_name: Leptolinea sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolate: largemouth bass

ncbi_organism_name: Pseudomonas anguilliseptica

ncbi_strain_identifiers: largemouth bass;SICAU PA001

ncbi_submitter: Sichuan Agricultural University, College of veterinary medicine


ncbi_organism_name: Shigella flexneri


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Yersinia pestis 780441

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia


ncbi_country: Austria

ncbi_isolation_source: honey

ncbi_organism_name: Parasaccharibacter sp. TMW 2.1886

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: New Zealand

ncbi_isolation_source: cattle

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni BIGS0013


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 6_1

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Desulfobulbus sp.

ncbi_strain_identifiers: MAG 6_1

ncbi_submitter: WHOI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human gut

ncbi_organism_name: Holdemania filiformis


ncbi_country: Malaysia: Johor; Batu Pahat

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei university college of medicine


ncbi_country: Sweden: Oerebro

ncbi_isolation_source: implant-asscoiated infection

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Aarhus University


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_organism_name: Ferrimonas marina NBRC 102583

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Health Canada


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Huaian

ncbi_isolation_source: pig slaughterhouse

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_country: Hungary

ncbi_isolation_source: Food: Red deer meat

ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: University of Zurich


ncbi_country: France: Lorient

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella sp. BO3

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Walnut Creek

ncbi_organism_name: Escherichia coli

ncbi_submitter: Joint Genome Institute


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Sediminimonas sp.

ncbi_submitter: McGill University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Taiwan: Taoyuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: South Korea: Jeollabuk-do; Wanju_Gun; Soyang-myeon

ncbi_isolation_source: Particulate matters in swine house

ncbi_organism_name: Chryseobacterium suipulveris

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_submitter: PathWest Laboratory Medicine WA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Florida

ncbi_isolation_source: Swine feces

ncbi_submitter: University of Florida


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pusillimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: AAFC


ncbi_country: USA: LaJolla; Scripps Pier

ncbi_isolation_source: flow cytometry enriched sample from Scripps pier surface waters

ncbi_submitter: University of California, Santa Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;x__Oscillatoriophycideae;o__Chroococcales;f__Aphanothecaceae;g__Candidatus Atelocyanobacterium;s__Candidatus Atelocyanobacterium thalassae;x__Candidatus Atelocyanobacterium thalassa isolate SIO64986


ncbi_organism_name: Streptomyces atratus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: uncultured Sulfuricella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Kapaibacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;x__unclassified Candidatus Kapaibacteriales;s__Candidatus Kapaibacteriales bacterium


ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Tengchong; Jinze hot spring

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Paediatric Medical ICU

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_assembly_name: freshwater MAG --- F4_bin-351

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Hydrothermal vent

ncbi_organism_name: Peribacillus alkalitolerans


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_country: USA: Montoursville; Pennsylvania

ncbi_isolation_source: Freshwater Creek

ncbi_organism_name: Flavobacterium sp. JRM

ncbi_strain_identifiers: JRM

ncbi_submitter: GCAT-SEEK


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Greece: Epirus

ncbi_isolation_source: cheese whey

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Japan: off the Shimokita Peninsula

ncbi_organism_name: Brevundimonas denitrificans

ncbi_submitter: Osaka City University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Thermoflexaceae bacterium

ncbi_submitter: EPFL


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: compost

ncbi_organism_name: Sphingobacterium composti

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: Singapore

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_organism_name: Streptomyces mauvecolor

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: blood

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loc090721-7m_bin-765

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Serbia

ncbi_isolation_source: plants rhizosphere

ncbi_organism_name: Streptomyces sp. BV333

ncbi_submitter: Fraunhofer IGB


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pretoria


ncbi_organism_name: Brucella abortus

ncbi_strain_identifiers: clpP

ncbi_submitter: China Animal Disease Control Center


ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. BR1R-5

ncbi_submitter: Tokyo University of Science


ncbi_country: China: Nanjing

ncbi_isolation_source: gut

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Colombia

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Caballeronia sp. LZ065

ncbi_submitter: University of Texas at Arlington


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: human

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Gilliamella apicola


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Gracilimonas sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_strain_identifiers: NCP 258

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Providencia sp. PROV046

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Anaerolineae bacterium CFX9

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__unclassified Anaerolineae;s__Anaerolineae bacterium CFX9


ncbi_country: Austria

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome


ncbi_country: Spain: Malaga; Algarrobo Costa

ncbi_isolation_source: mango apical buds from mango crop farm

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Germany: Goettingen

ncbi_isolation_source: abdominal drain fluid

ncbi_submitter: University Medical Center Goettingen


ncbi_organism_name: Ligilactobacillus saerimneri

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1369

ncbi_submitter: Broad Institute


ncbi_country: China: Wuxi

ncbi_isolation_source: Cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Chryseobacterium sp. SLBN-27

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field SW area low-temperature vent site

ncbi_isolation_source: chimney gradient scrape: middle section taken from low-temperature hydrothermal vent chimney

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: University of Bergen


ncbi_organism_name: Acidiphilium multivorum AIU301

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_assembly_name: freshwater MAG --- Umea_bin-05835

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Massilia sp.


ncbi_organism_name: Ciceribacter naphthalenivorans

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Zhejiang

ncbi_isolation_source: soybean

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: zhejiang university


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV229

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Ethiopia: Tigray; Central Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Gallimonas intestinalis

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinalis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongren Hospital, Shanghai Jiao Tong University School of Medicine,


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The University of The West Indies, St. Augustine


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG_4_10_14_0_8_um_filter_43_18


ncbi_organism_name: Streptomyces sp. NPDC059720

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: freshwater metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Candidatus Arsenophonus nilaparvatae

ncbi_strain_identifiers: HZAU 001

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Sutcliffiella cohnii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: EMG


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hubei

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Jorhat; Assam

ncbi_isolation_source: rice garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Assam Agricultural University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Poland

ncbi_isolation_source: choana swab

ncbi_organism_name: Falsigemmobacter intermedius

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: South Korea

ncbi_isolation_source: greenhouse soil

ncbi_organism_name: Lysobacter daejeonensis GH1-9

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Bizionia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Yantai University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: JLU


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus WMCA6084

ncbi_submitter: Broad Institute


ncbi_organism_name: Olsenella uli

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Ideonella lacteola

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Trichodesmium sp. ALOHA_ZT_67

ncbi_submitter: SCOPE


ncbi_organism_name: Komagataeibacter europaeus NBRC 3261

ncbi_strain_identifiers: NBRC 3261

ncbi_submitter: Kinki University


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Chicago


ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Lachnospiraceae bacterium UBA4920

ncbi_submitter: University of Queensland


ncbi_country: USA: Colorado

ncbi_isolation_source: Sediment from fracked well

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Iowa

ncbi_isolation_source: Cecum

ncbi_organism_name: Ligilactobacillus murinus ASF361


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus sp. IVB6238

ncbi_submitter: University of Bern


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Fusobacterium polymorphum ATCC 10953

ncbi_submitter: Forsyth Institute


ncbi_country: France

ncbi_isolation_source: artisanal lactic starter (Gruyere de Comte)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 24

ncbi_submitter: Brigham Young University


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Timonella sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Truepera sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Nodularia spumigena UHCC 0040

ncbi_strain_identifiers: UHCC 0040

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;s__Nodularia spumigena;x__Nodularia spumigena UHCC 0040


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Toho university


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC001137

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Germany

ncbi_isolation_source: raw sausage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Acinetobacter baumannii 25569_10

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Michigan

ncbi_organism_name: Rhodococcoides fascians A76

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_organism_name: Veillonella parvula

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mariniflexile soesokkakense

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella grimontii

ncbi_strain_identifiers: Gar RS 18

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR4308

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: University at Buffalo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. La24

ncbi_submitter: Chinese Academy of Agricultural Sciences