ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_assembly_level: Scaffold

ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: Universiti Teknologi Malaysia


gtdb_representative: t

ncbi_organism_name: Caballeronia sp. LZ033

ncbi_submitter: University of Texas at Arlington


ncbi_country: United Kingdom: England

ncbi_isolation_source: Vagina

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Acinetobacter schindleri


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Lactobacillus jensenii


ncbi_assembly_level: Complete Genome

ncbi_country: USA

ncbi_isolation_source: pericardium/lung

ncbi_organism_name: Escherichia coli APEC O18

ncbi_strain_identifiers: APEC O18

ncbi_submitter: Iowa State University


ncbi_organism_name: Streptomyces sp. H27-D2

ncbi_submitter: Yildiz Technical University


ncbi_country: India: Krishna-Godaveri Basin; Andhara Pradesh

ncbi_isolation_source: soil sample

ncbi_organism_name: Rhodococcus rhodochrous KG-21

ncbi_submitter: Centre for Cellular and Molecular Biology (CSIR-CCMB)


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Anaplasma phagocytophilum str. ApMUC09

ncbi_submitter: IGS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_country: USA: Colorado Springs; CO

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Dyella marensis

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_country: China

ncbi_isolation_source: feces from post-weaning diarrhea of piglets

ncbi_organism_name: Providencia heimbachae

ncbi_submitter: Northeast Agricultural University


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Guttural pouch lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Chile: Santiago

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Universidad de Concepcion


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of Montreal


ncbi_country: India: Kerala; Plakkad

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Gulbarga University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_organism_name: Escherichia coli

ncbi_submitter: Capital institution of Pediatrics


ncbi_isolation_source: stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Oligella urethralis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: marine water

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Sheep

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Cyanobacteria bacterium J069

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J069


ncbi_country: China: Liaoning

ncbi_isolation_source: pork from market

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Belgium

ncbi_isolation_source: wild boar meat

ncbi_organism_name: Clostridium sp. EV3

ncbi_submitter: KULeuven


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Bangladesh

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_submitter: Center for Bioinformatics


ncbi_country: New Zealand

ncbi_submitter: University of Otago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae TP6-1


ncbi_isolation_source: hairspray

ncbi_organism_name: Microbacterium hatanonis

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese center for disease control and prevention

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptomyces sp. NPDC012616

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC020125


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: Philippines

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_organism_name: Phormidesmis sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Corynebacterium renale

ncbi_submitter: SC


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Broad Institute


ncbi_country: Canada: Mont-Saint-Hilaire (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. E-045

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: University of Minnesota


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with avicel

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: India

ncbi_organism_name: Vibrio fortis

ncbi_submitter: Institute of Life Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Surrey


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Prevotellaceae bacterium UBA1743

ncbi_submitter: University of Queensland


ncbi_submitter: National Health Research Institutes


ncbi_country: Russia: Altay Mountains

ncbi_isolation_source: Soil in an open quarry for the mining of brown coal; heated by underground coal combustion

ncbi_organism_name: Brockia lithotrophica

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Brockia;s__Brockia lithotrophica


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: FL

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Korea

ncbi_isolation_source: cotton-waste compost

ncbi_organism_name: Bacillus velezensis M27

ncbi_submitter: National Academy of Agricultural Science, RDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis;x__Bacillus velezensis M27


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine

ncbi_organism_name: Alteromonas macleodii


ncbi_organism_name: Akkermansia muciniphila


gtdb_type_species_of_genus: t

ncbi_assembly_level: Chromosome

ncbi_country: New Caledonia: Prony Bay; Riviere des Kaoris

ncbi_isolation_source: carbonate chimney

ncbi_organism_name: Serpentinicella alkaliphila

ncbi_submitter: Mediterranean Institute of Oceanography (MIO), UMR 7294


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA6170


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Hong Kong

ncbi_organism_name: Christensenella hongkongensis

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG14126

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Israel

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: South Korea:Yangyang-gun

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Korea Institute of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Lake Washington

ncbi_organism_name: Acidovorax sp. 106

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Amnibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Thermoflexaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangdong

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacillales bacterium UBA4855

ncbi_submitter: University of Queensland


ncbi_country: France: Experimental lake at Foljuif

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium quasiaquaticum

ncbi_submitter: Sorbonne University


ncbi_country: Italy: Genova

ncbi_isolation_source: endotracheal tube

ncbi_organism_name: Staphylococcus aureus SA10

ncbi_submitter: Istituto Giannina Gaslini - Teaching Hospital


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_submitter: concordia university


ncbi_organism_name: Escherichia coli KTE1

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_isolation_source: Biogas sludge

ncbi_organism_name: Sporanaerobacter sp. PP17-6a

ncbi_submitter: CEBITEC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: water

ncbi_organism_name: Mycolicibacterium austroafricanum

ncbi_submitter: UNIFESP


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_submitter: ncipd


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: BIFSCo Region 3

ncbi_isolation_source: bovine hide

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1900


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin123

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin123


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: North Carolina

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Massilimicrobiota sp. An134

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Hyellaceae cyanobacterium CSU_1_1

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: Switzerland

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolate: metabat2_coassembly_bwa.550 MAG

ncbi_organism_name: Coraliomargarita sp. CAG:312

ncbi_strain_identifiers: metabat2_coassembly_bwa.550 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPLOWO2_02_FULL_48_13


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Thailand: Phra Nakhon Si Ayutthaya

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter sp. Colony322

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Zurich


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_assembly_name: Salmonella enterica CVM N41924-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: Rumen uncultured genome RUG12534

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: Tajikistan

ncbi_isolation_source: fermented goat milk

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Cryobacterium sp. 10S3

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: urine

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Candidatus Competibacter denitrificans

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;s__Candidatus Competibacter denitrificans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;s__Candidatus Competibacter denitrificans


ncbi_country: Portugal

ncbi_submitter: UiT - The Arctic University of Norway


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parvibacter caecicola


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Fimbriimonadaceae bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Florence


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-18735

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Enterococcus sp. DIV1407a

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Saccharofermentans sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: rectum (Canis lupus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Santiniketan

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Visva Bharati


ncbi_country: Serbia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: South Korea

ncbi_isolation_source: Pus

ncbi_organism_name: Pasteurella canis

ncbi_submitter: Hallym University


ncbi_country: Japan: Okayama

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium guangdongense

ncbi_submitter: RIKEN


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Utah

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: USDA


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Lentisphaerales bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Bacillaceae bacterium UBA7792


ncbi_organism_name: Streptomyces sp. NPDC002688

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax sp. J22G40

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Corse; Alata

ncbi_isolation_source: petiole from symptomatic leaf

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRA


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: Microbacterium sp. 3J1

ncbi_organism_name: Microbacterium sp. 3J1

ncbi_submitter: University of Granada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: Cambodia

ncbi_isolation_source: Healthy human (stool)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tufts University


ncbi_country: Lebanon

ncbi_isolation_source: clinical

ncbi_submitter: Lebanese American University


ncbi_assembly_name: Rumen uncultured genome RUG701

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_isolation_source: feces from chicken farm

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidocella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Guangzhou

ncbi_isolation_source: beer

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: South China University of Technology


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: North Dakota

ncbi_organism_name: Xanthomonas translucens

ncbi_submitter: Kansas State University


ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter;s__Fibrobacter succinogenes;sb__Fibrobacter succinogenes subsp. succinogenes;x__Fibrobacter succinogenes subsp. succinogenes S85


ncbi_country: India

ncbi_isolation_source: cow milk

ncbi_organism_name: Paenibacillus lentimorbus NRRL B-30488

ncbi_submitter: CSIR-National Botanical Research Institute


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA2975

ncbi_submitter: University of Queensland


ncbi_organism_name: Immundisolibacter sp.


ncbi_country: USA: South Carolina

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Environment and Climate Change Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. 27098_8_161


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-M05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_country: Chile: Region de Valparaiso; Quillota

ncbi_isolation_source: plant tissue

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Turicimonas muris


ncbi_country: Taiwan

ncbi_isolation_source: Poultry manure

ncbi_organism_name: Pseudogemmobacter faecipullorum

ncbi_submitter: Nation Chung Hsing University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Buchnera aphidicola (Eriosoma lanigerum)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Helicobacter hepaticus ATCC 51449


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_submitter: National Institute for Communicable Disease


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Dickeya chrysanthemi

ncbi_submitter: Cornell University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: San Antonio; TX

ncbi_isolation_source: blood culture

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: ocean water at depth 4950m

ncbi_organism_name: Thalassolituus sp. UBA2527

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio chagasii

ncbi_strain_identifiers: CAIM 431

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Micromonospora sp. NPDC000668


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Spirochaetia bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Yancheng City; Jiangsu Province

ncbi_isolation_source: sediments of coastal wetland

ncbi_organism_name: Rheinheimera sp. YQF-1

ncbi_submitter: Environment and Plant Protection Institute,Chinese Academy of Tropical Agricultural Sciences


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Acetofilamentum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Uruguay: native forest Manidyu Artigas

ncbi_isolation_source: Plant root nodule

ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Instituto de Investigaciones Biologicas Clemente Estable


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDB9P120P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan: Gifu

ncbi_isolation_source: soil from a swine farm

ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center


ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: patient with paratyphoid fever

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, ChineseCenter for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A;x__Salmonella enterica subsp. enterica serovar Paratyphi A str. ZJ98-53


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia sp. AU15512

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Sweden

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Ocean University of China


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Institute of Microbiology and Genetics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: Klebsiella sp. 141203

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Campylobacter coli K7

ncbi_submitter: University of Exeter


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 401

ncbi_submitter: SC


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V06_P1A73T115

ncbi_submitter: Instituto de ecologia


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Sutterella wadsworthensis CAG:135

ncbi_submitter: DTU


ncbi_assembly_name: freshwater MAG --- MJ-2014-D4_bin-563

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfobulbaceae bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Japan

ncbi_organism_name: Halobacillus kuroshimensis DSM 18393

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Citrobacter sp. UYEF32


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Radish kimchi

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Gachon University


ncbi_isolation_source: Hearts of Romaine-Organic

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: rectal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: The University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Enterococcus sp.

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Leptotrichia hofstadii F0254

ncbi_submitter: WUGSC


ncbi_country: Gaza Strip

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus-Liebig University


ncbi_organism_name: Granulicella tundricola MP5ACTX9

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Facklamia hominis

ncbi_submitter: Loyola University Chicago


ncbi_country: Honduras: Francisco Morazan; Tegucigalpa

ncbi_isolation_source: Cornea secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Canada

ncbi_isolation_source: sludge

ncbi_organism_name: [Clostridium] saccharolyticum WM1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Paenibacillus sp. y28

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan:Nahari River

ncbi_isolation_source: skin ulcer

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Kochi University


ncbi_assembly_name: freshwater MAG --- KTt_bin-1911

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Microbiology School of Pharmacy, Tokyo University of Pharmacy and Life Sciences


ncbi_organism_name: Lysinibacillus sp. FSL L8-0126

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL L8-0126


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterocloster clostridioformis


ncbi_isolation_source: blood

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: University of Washington


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Stutzerimonas balearica

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Brucella abortus

ncbi_strain_identifiers: BFY

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Marinifilum caeruleilacunae

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pretoria


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. Leaf436

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7 str. 07-3391

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 07-3391


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: cooked food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfuricella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus cereus group sp. BceL299

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL299


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Washington University in St. Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: IZLSLER


ncbi_isolation_source: metagenome

ncbi_organism_name: Ruegeria sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Queensland

ncbi_isolation_source: nose of healthy child

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The University of Queensland


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: bronchial washing

ncbi_organism_name: Rothia sp. HMSC066H02

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC066H02


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: OR

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Portugal

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. GN70

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: Belgium

ncbi_isolation_source: skin lesion

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_organism_name: Caldimonas thermodepolymerans

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Burkholderia cepacia ATCC 25416

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;x__Burkholderia cepacia complex;s__Burkholderia cepacia;x__Burkholderia cepacia ATCC 25416


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0444

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_submitter: Institute for Medical Research Malaysia


ncbi_country: Brazil: Londrina; PR

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Universidade Estadual de Londrina


ncbi_assembly_name: Rumen uncultured genome RUG12503

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_country: Germany: Hamburg

ncbi_isolation_source: Flax plant bast fibre

ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: uncultured Campylobacteraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Sierra Vizta; AZ

ncbi_organism_name: Lysinibacillus pinottii

ncbi_submitter: NCAUR-ARS-USDA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gwangyang

ncbi_isolation_source: Gochujang

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pontibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacillus sp. CJ1

ncbi_submitter: Chung-Ang university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CJ1


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1382

ncbi_submitter: Broad Institute


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: blood of a gelding from the Lahore Polo Club

ncbi_organism_name: Burkholderia mallei PRL-20

ncbi_submitter: TIGR


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_organism_name: Dyella caseinilytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_submitter: Shanghai JiaoTong University


ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Thailand: Khon Kean

ncbi_isolation_source: vagina

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: RCEID, Khon Kaen University


ncbi_country: USA:Texas; Kleberg County; Los Olmos Creek

ncbi_isolation_source: hypersaline river water

ncbi_organism_name: Salinivibrio sp. VYel8

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Mammaliicoccus fleurettii

ncbi_submitter: University of Siena


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: California

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Oligoflexus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Houston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Jiangsu Huaiyin Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolate: HCA3 bin3

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_strain_identifiers: HCA3 bin3

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CMAN-Suc

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Aequorivita sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: Blood

ncbi_organism_name: Enterococcus faecalis EnGen0074

ncbi_submitter: Broad Institute


ncbi_country: Australia: American River; Kangaroo Island

ncbi_isolation_source: Oriental Cockroach

ncbi_organism_name: Fructobacillus americanaquae

ncbi_submitter: The University of Adelaide


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: Germany

ncbi_organism_name: Mycetohabitans sp. B4

ncbi_submitter: University of Melbourne


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_submitter: La Trobe University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria immobilis

ncbi_submitter: Cornell University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Leptospira licerasiae ATCC BAA-1110

ncbi_strain_identifiers: ATCC BAA-1110

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Umea University


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Candidatus Proelusimicrobium tauri

ncbi_submitter: University of Queensland


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Mycobacterium sp.


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_submitter: EPFL


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Nanning

ncbi_isolation_source: cassava root

ncbi_organism_name: Curtobacterium citreum

ncbi_submitter: Guangxi University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB8_1A_041

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: China: Sichuan

ncbi_isolation_source: Rice flour product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National University of Sciences & Technology (NUST)


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1503

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Vicinamibacteraceae bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Stanford University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Mycoplasmataceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus MISS6131


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Malmo

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter variabilis

ncbi_strain_identifiers: NIPH 2171


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: France: Limoges

ncbi_isolation_source: Lavabo

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomultivorans

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: breast milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Sanyuan Foods Co. Ltd


ncbi_organism_name: Intrasporangium sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_assembly_name: Rumen uncultured genome RUG11030

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Netherlands: Terschelling

ncbi_isolation_source: Dune grassland

ncbi_organism_name: Collimonas pratensis

ncbi_submitter: Netherlands Institute of Ecology


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Auckland


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0027

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Buryats

ncbi_isolation_source: dairy product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with inulin

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: stool

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: IMGAG (Universitaetsklinikum Tuebingen)


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: Yale University


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. B6B3

ncbi_submitter: Ondokuz Mayis university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Fermentimonas caenicola

ncbi_submitter: CEBITEC


ncbi_isolation_source: Sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: AALTL

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Falcon Heights

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: India: Chandigarh

ncbi_isolation_source: Gall bladder

ncbi_organism_name: Staphylococcus equorum subsp. equorum

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_country: China: Dali region; Yunnan

ncbi_isolation_source: dairy fan

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Inner Mongolia Mengniu Dairy (Group) Co. Ltd.


ncbi_organism_name: Veillonella seminalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Levilactobacillus acidifarinae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter puyangensis

ncbi_submitter: University of Parma


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ETH Zurich


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus sp. 22483

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 22483


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Candidatus Alistipes pullicola


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: ROV grab from gas hydrate in Gulf of Mexico

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Loc090721-1m_bin-386

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Hong Kong

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: New York

ncbi_isolation_source: trachael aspirate

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bulleidia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolation_source: marine metagenome


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Jiangxi

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH16049

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Norway

ncbi_isolation_source: Head ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Qipengyuania gaetbuli

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: USA: Bethesda

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_country: Kenya

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_country: Australia: Brisbane

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: knee synovial fluid

ncbi_organism_name: Kingella kingae 11220434

ncbi_submitter: Université Aix-Marseille


ncbi_organism_name: Lederbergia lenta

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: VA

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Capnocytophaga sp. FDAARGOS_737

ncbi_submitter: US Food and Drug Administration


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: feces


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Montevideo

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: Russia: Samara

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Thermostichus sp. DG02_1_bins_55

ncbi_submitter: Sun Yat-sen University


ncbi_country: Taiwan

ncbi_isolation_source: Abscess

ncbi_organism_name: Prevotella sp. TCVGH

ncbi_strain_identifiers: TCVGH

ncbi_submitter: National Chung Cheng University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Aquincola sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics