ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Qingdao

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_assembly_level: Contig

ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas sp. FP2196

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_country: USA:Colorado; South Platte River near Kersey

ncbi_isolate: SPKER

ncbi_isolation_source: Flowing water column of South Platte River; enriched in culture for about 1.5 years

ncbi_organism_name: Candidatus Nitrotoga sp. SPKER

ncbi_strain_identifiers: SPKER

ncbi_submitter: University of Colorado Denver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp. SPKER


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Antarctica

ncbi_organism_name: Exiguobacterium antarcticum DSM 14480

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium antarcticum;x__Exiguobacterium antarcticum DSM 14480

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Chromosome

ncbi_country: USA: Texas

ncbi_isolation_source: 2-methylbutane enrichment from soil

ncbi_organism_name: Mycolicibacterium vanbaalenii

ncbi_submitter: North Carolina State University


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Ralstonia pseudosolanacearum


ncbi_assembly_name: Rumen uncultured genome RUG11802

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Rhizobium sp.


ncbi_isolation_source: terrestrial

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Sphaerimonospora mesophila

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Acutalibacter muris


ncbi_country: France: river Bleone close to Durance confluent

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Sorbonne University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Methyloligellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rumen

ncbi_organism_name: Butyrivibrio fibrisolvens

ncbi_submitter: Ben Gurion University of the Negev


ncbi_country: South Korea: Jeongeup

ncbi_isolation_source: intestine from larvae

ncbi_organism_name: Cellulosimicrobium protaetiae

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology (KRIBB)


ncbi_organism_name: Rhizomicrobium electricum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Italy: Foggia

ncbi_isolation_source: Litter

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_assembly_name: Rumen uncultured genome RUG11366

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 2

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Brazil: RJ

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Sphingomonas jaspsi DSM 18422

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: ENVO: 01000924(plumbing drain)

ncbi_submitter: Mahidol University


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: San Diego State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: France: (7)

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: INRAE


ncbi_country: Belarus

ncbi_isolation_source: excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-142

ncbi_submitter: Broad Institute


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_organism_name: Pseudoalteromonas sp. JC3

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Shinella sp.


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-538

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Mesoterricola sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Achromobacter spanius


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Turicibacter bilis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces griseus


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Japan

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderia mallei FMH

ncbi_strain_identifiers: FMH

ncbi_submitter: TIGR


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Rumen uncultured genome RUG11423

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: brain (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Enterococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Paenarthrobacter nitroguajacolicus

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Rhodanobacter sp. FW106-PBR-LB-2-19

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD2_bin-1309

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_strain_identifiers: Nigg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_assembly_name: IMG-taxon 2617270886 annotated assembly

ncbi_organism_name: Pseudoalteromonas lipolytica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


gtdb_type_species_of_genus: t

ncbi_organism_name: Rehaibacterium terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Corvalis; Oregon

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Sweden

ncbi_isolation_source: pericard

ncbi_organism_name: Mycobacterium tuberculosis BTB09-058

ncbi_submitter: Broad Institute


ncbi_organism_name: Helicobacter bilis


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1026


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF28-5AC

ncbi_submitter: BGI


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Portugal

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Max Rubner-Institut


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Sphingobium jiangsuense


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Mycobacterium tuberculosis KZN 605

ncbi_strain_identifiers: KZN XDR

ncbi_submitter: The Broad Institute Genome Sequencing Platform

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis KZN 605


ncbi_country: USA: Pacific Norwthwest

ncbi_isolation_source: knee bursa

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: University of Washington


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Burkholderia thailandensis Bt4

ncbi_submitter: NMRC


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: UiT The Arctic University of Norway


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Candidatus Dorea intestinigallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tokyo University of Pharmacy and Life Sciences


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Sporosarcina beigongshangi

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Japan:Yamanashi; Nirasaki

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces graminofaciens

ncbi_submitter: Chemistry, Tokyo Institute of Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: cattle fecal sample

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: New Zealand

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Xiamen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chloroflexi bacterium SZAS-1

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium SZAS-1


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: poultry waste

ncbi_organism_name: Chryseobacterium arthrosphaerae

ncbi_submitter: UFRGS - Universidade Federal do Rio Grande do Sul


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Phaeobacter sp. BS23

ncbi_submitter: Centre for Marine Science and Innovation, University of New South Wales Sydney


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bacillus cereus group sp. RP43

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. RP43


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: [Clostridium] scindens


ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Netherlands: North Brabant

ncbi_isolation_source: water

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring; Malaysia

ncbi_organism_name: Micrococcus aloeverae

ncbi_submitter: University of Malaya


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Dialister sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Gallimonas merdae

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Carboxylicivirga sp. 1411-1

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: MI

ncbi_isolation_source: cloacae

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Omnitrophica bacterium GWA2_41_15

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium GWA2_41_15


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus champanellensis

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptococcus ferus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Alteromonas sp. KUL49

ncbi_submitter: RIMG, Kochi University


ncbi_country: Kenya: Nyanza Province

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Brazil

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Dublin

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Clostridium perfringens SM101

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeollabuk-do Agricultural Research and Extension Services


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Clostridiales bacterium UBA1380

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Stenotrophomonas sp.


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: Pacific; Franklin County; Missouri

ncbi_isolation_source: Bathroom Countertop

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: SEMIA 420

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: MT

ncbi_isolation_source: soil

ncbi_organism_name: Listeria immobilis

ncbi_submitter: Cornell University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Paraguay: Paraguari

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: South Africa: Zola

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0304816.11

ncbi_submitter: IGS


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Kvitko Lab


ncbi_country: Austria: Alps; Rechteckteich

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter asymbioticus

ncbi_strain_identifiers: MWH-RechtKolB

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH PA23-33

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: University of Wyoming


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: HUN-REN Biological Research Centre, Szeged


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli 2845350


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Empedobacter sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: China: Haixi city; Qinghai province

ncbi_organism_name: Actinomyces qiguomingii

ncbi_strain_identifiers: actinomyces sp. 410

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Vibrio cholerae NCTC 8457

ncbi_strain_identifiers: NCTC 8457

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae NCTC 8457


ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malawi

ncbi_isolation_source: CSF


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Zaragoza


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: EMG


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Trachymyrmex fungus garden

ncbi_organism_name: Enterobacter sp. Tr-810

ncbi_submitter: UW-Madison


ncbi_isolation_source: stool from individual T

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_assembly_name: freshwater MAG --- Loc090402-7m_bin-1078

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus lutetiensis


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Cornell University


ncbi_country: Germany: North Rhine-Westphalia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Bifidobacterium sp. B3998

ncbi_submitter: China Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Lysinibacillus pakistanensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Leptolyngbya sp. ST-U4

ncbi_submitter: Institute of Hydrobiology


ncbi_assembly_name: Rumen uncultured genome RUG12389

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Solibacillus isronensis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: groundwater

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Ideonella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Poland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium glucuronolyticum

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: Faeces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Sphingomonadaceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Sphingomicrobium sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Treponema vincentii

ncbi_strain_identifiers: OMZ 800

ncbi_submitter: HKU


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA129

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA129

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020038545

ncbi_submitter: Broad Institute


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Leptospira wolffii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: [Archangium] primigenium

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_country: Cuba

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Chlamydia psittaci C19/98

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: MIT


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Segatella copri

ncbi_submitter: BGI


ncbi_country: New Zealand:Hamilton

ncbi_isolation_source: Bovine rumen

ncbi_organism_name: Clostridiales bacterium FE2011

ncbi_submitter: AgResearch Ltd


ncbi_country: China: Zhejiang

ncbi_isolation_source: poultry

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Africa: Thokozani Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0084


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: USA:New York Orleans

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Sungiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungiibacteriota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Cedecea davisae


ncbi_organism_name: Bacillus atrophaeus ATCC 9372-1

ncbi_submitter: Transformational Medical Technologies Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus atrophaeus;x__Bacillus atrophaeus ATCC 9372;x__Bacillus atrophaeus ATCC 9372-1


ncbi_country: Colombia: Cali

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: INS 009

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_organism_name: Providencia vermicola


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_country: South Korea: Eumseong County; North Chungcheong Province

ncbi_isolation_source: Soil

ncbi_organism_name: Trinickia soli

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Adiutrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfarculia;o__Candidatus Adiutricales;f__Candidatus Adiutricaceae;g__Candidatus Adiutrix;x__unclassified Candidatus Adiutrix;s__Candidatus Adiutrix sp.


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus kimbladii


ncbi_organism_name: Candidatus Nephthysia bennettiae

ncbi_submitter: University of New South Wales

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Nephthysia;s__Candidatus Nephthysia bennettiae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Nephthysia;s__Candidatus Nephthysia bennettiae


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: India: Kerala; Kollam

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CSIR- National Institute of Oceanography


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_country: China: Sichuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Fusobacterium nucleatum CTI-6

ncbi_submitter: Broad Institute


ncbi_organism_name: Achromobacter ruhlandii


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_country: China: Henan

ncbi_isolation_source: sputum

ncbi_submitter: Jiaozuo people's hospital


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella corporis;x__Prevotella corporis DSM 18810 = JCM 8529


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Paenibacillus jamilae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: CA

ncbi_isolation_source: Casing

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Zhangzhou

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus sp. FJAT-49736

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-49736


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: uterus

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_country: Australia

ncbi_organism_name: Alysiella crassa DSM 2578

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Kamchatka; Uzon Caldera

ncbi_isolation_source: thermophilic sediment from neutral hot spring

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: Infected limb joint

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Health Research Institutes


ncbi_submitter: Saint-Louis Hospital


ncbi_isolate: AOP5_CZ1_surf _bin _11

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_submitter: Faculty of Medicine, Chulalongkorn University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus gilvus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Candidatus Egerieenecus merdigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Egerieenecus;s__Candidatus Egerieenecus merdigallinarum


ncbi_country: Pacific Ocean: central gyre

ncbi_isolation_source: sediment sample collected at the water-sediment interface from the South Pacific gyre; IODP site U1369

ncbi_organism_name: Proteobacteria bacterium SPGG2

ncbi_submitter: Benjamin Tully

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium SPGG2


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium UBA4062


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: UFMG


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Wyoming Soil

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Ohio State university


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Hainan

ncbi_organism_name: Acinetobacter sp. YH12126

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 5 / E; 5m depth; 0.2 filter

ncbi_organism_name: Clostridiales bacterium GWE2_32_10

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG11641

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Ja_bin-3235

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Calditrichota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Calditrichota;x__environmental samples;s__uncultured Calditrichota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Brazil: Recife

ncbi_isolation_source: Tissue fragment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: Panama

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wAdent

ncbi_submitter: University of California, Los Angeles


ncbi_country: Australia: Newcastle

ncbi_organism_name: Agathobacter sp.


ncbi_country: USA: Lake; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: Linnaeus University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_country: USA: Boston; MA

ncbi_isolation_source: supragingival dental plaque

ncbi_organism_name: Actinomyces oris

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Sphingomonadaceae bacterium Delta

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0024

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-163

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium H7

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium H7


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_country: Japan

ncbi_isolation_source: sink

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Toho University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Diego; CA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 92

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Sphaerochaeta sp.

ncbi_strain_identifiers: SO_2017_CLC bin 92

ncbi_submitter: University of Waterloo


ncbi_country: Japan: Izu Oshima

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas gozinkensis

ncbi_submitter: Juntendo University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: South Korea

ncbi_isolation_source: Plant

ncbi_organism_name: Adhaeribacter rhizoryzae

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_isolation_source: Pasteurized milk from the processing line of powdered infant formula

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: Korea University


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: California; Tulare Co; Porterville; Ave 108/Rd 270

ncbi_isolation_source: pool of 3 insecticide susceptible adult insects collected from Citrus sinensis (L.) Osbeck (navel orange)

ncbi_submitter: University of California, Riverside

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Palibaumannia;s__Candidatus Palibaumannia cicadellinicola


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland: Bydgoszcz

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. 2877

ncbi_submitter: National Medicines Institute


ncbi_submitter: OARSA, CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans;x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal676


ncbi_country: USA: South Dakota

ncbi_isolation_source: Water pool in cave at Wind Cave National Park

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: kefir

ncbi_organism_name: Acetobacter syzygii

ncbi_submitter: Universidad de Valparaiso


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas syringae pv. theae

ncbi_submitter: Shizuoka University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Northwestern University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Netherlands: River Waal

ncbi_isolation_source: riparian wetland soil

ncbi_organism_name: Methylosinus sp. H3A

ncbi_submitter: ESF, EUROCORES, NWO


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bosea eneae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptomyces sp. NBC_00842

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Microtetraspora malaysiensis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Salmonella sp. NW743

ncbi_submitter: Sichuan University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Waltera intestinalis


ncbi_assembly_name: freshwater MAG --- I3b_bin-080

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Ammoniphilus resinae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Rhode Island


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Thailand

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Mahidol University


ncbi_country: United Kingdom: Surrey

ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: University of Nottingham


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: BGI


ncbi_country: China: Qinghai province

ncbi_organism_name: Aeromicrobium sp. S22

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: Lentibacter algarum

ncbi_submitter: marine college, shandong university


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: East Sea

ncbi_organism_name: Parashewanella spongiae

ncbi_submitter: Karolinska Institutet


ncbi_assembly_name: IMG-taxon 2700988702 annotated assembly

ncbi_organism_name: Roseovarius marisflavi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Salmonella enterica CVM N37925-SQ v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater SAG --- RF-1857-SP43-464-H3_S9

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Mayotte

ncbi_organism_name: Leptospira kirschneri str. 200801774

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides merdipullorum


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: sulfidic marine water cellulose enrichment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Boseongicola sp. SB0675_bin_26

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter sp. S4400-12

ncbi_submitter: Palacky University Olomouc


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: bronchial washing

ncbi_organism_name: Lactobacillus sp. HMSC066G01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Mobilicoccus sp.


ncbi_organism_name: Streptomyces asoensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Yantai University


ncbi_isolation_source: metagenome

ncbi_organism_name: Saccharomonospora viridis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Xi an

ncbi_isolation_source: fine-needle

ncbi_submitter: University College London (UCL)


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: garden soil

ncbi_organism_name: Streptomyces parvus

ncbi_strain_identifiers: NRRL B-1455

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: Germany

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Belize: Carrie Bow Cay

ncbi_isolation_source: single worm

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Candidatus Thiosymbion;x__unclassified Candidatus Thiosymbion;s__Candidatus Thiosymbion ectosymbiont of Robbea hypermnestra


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan:Kyoto; Kameoka

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. StoSoilB5

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: NIOO KNAW


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Stellenbosch University


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC094438

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: IMG-taxon 2708742414 annotated assembly

ncbi_organism_name: Bosea sp. TND4EK4

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. TND4EK4


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Montreal


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Netherlands

ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Mali

ncbi_isolation_source: rice product

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: Peru: Satipo region

ncbi_organism_name: Helicobacter pylori Sat464

ncbi_submitter: Dept. Molec. Microbiology, Washintgton University Medical School in Saint Louis


ncbi_country: Japan:Hokkaido; Rishiri Island

ncbi_isolation_source: Soil

ncbi_organism_name: Catellatospora sp. TT07R-123

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Streptomyces andamanensis

ncbi_strain_identifiers: PCU 347

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces sp. B1I3

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M179S2

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: chicken

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paenibacillus sp. NPDC057934

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Novosphingobium panipatense


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Salmonella sp. SKLX110369

ncbi_submitter: Zhejiang university


ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Jiulongibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Colombia: Castilla la Nueva

ncbi_isolation_source: oil reservoir water

ncbi_organism_name: Tepidiphilus sp.

ncbi_submitter: Universidad de Antioquia


ncbi_assembly_name: freshwater MAG --- Erken-D9_bin-0625

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Brazil

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Montana State University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWF1_40_6


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_strain_identifiers: IPCI

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: EMG


ncbi_country: United Kingdom: England

ncbi_isolation_source: Urine (CYSTO)

ncbi_submitter: University of Liverpool


ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Bacillus sp. FSL P4-0322

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL P4-0322


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Caldibacillus thermoamylovorans

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1369

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas luteola

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Candidatus Faecenecus gallistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__;o__;f__;g__Candidatus Faecenecus;s__Candidatus Faecenecus gallistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Faecenecus;s__Candidatus Faecenecus gallistercoris


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Methylorubrum extorquens

ncbi_strain_identifiers: TLI 801

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: Pectobacterium versatile A222-S6-N16

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A222-S6-N16

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Spiroplasma cantharicola

ncbi_submitter: Academia Sinica


ncbi_assembly_name: Isolate 11

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kalmar county hospital


ncbi_country: Russia: Irkutsk

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus qingshengii

ncbi_strain_identifiers: VKM Ac-2784D

ncbi_submitter: Limnological Institute Siberian Branch of the Russian Academy of Sciences


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_organism_name: Sediminicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: University of Michigan


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Below Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Greece

ncbi_isolation_source: clinical material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-155

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: PA

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: USDA


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Bucharest


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: India: Himachal Pradesh

ncbi_isolation_source: forest soil sample

ncbi_organism_name: Nocardioides solisilvae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: Turkey

ncbi_organism_name: Bacillus cereus group sp. N24

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N24


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium persicum

ncbi_submitter: CHUV-UNIL


ncbi_country: China: Hangzhou

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Escherichia coli

ncbi_submitter: IHU Mediteranee Infection


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Catoptria pinella


ncbi_isolation_source: cold seep

ncbi_organism_name: Thermohalobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptomyces sp. NPDC093808

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nostoc sp. 2RC

ncbi_submitter: University of Missouri-St. Louis


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: University of Zurich


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES