ncbi_submitter: Zhejiang Provincial People's Hospital


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Brigham Young University


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Contig

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Holophagae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: UIUC


ncbi_organism_name: Variovorax sp. 278MFTsu5.1

ncbi_submitter: University of the Pacific


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2980

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2980


ncbi_organism_name: uncultured Prevotella sp.


ncbi_strain_identifiers: CENAM

ncbi_submitter: Centro Nacional de Metrologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNIFESP - CRT DST/Aids SP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_submitter: City University of Hong Kong


ncbi_country: Taiwan

ncbi_isolation_source: hospital

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Cattle

ncbi_organism_name: Chelativorans sp. Marseille-P2723

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Qingdao University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22949;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NT

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: China: Henan

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_level: Chromosome

ncbi_country: France

ncbi_isolation_source: butterbur

ncbi_organism_name: Pseudomonas sp. BIGb0427

ncbi_submitter: University of Alabama


ncbi_country: Belarus: Brest

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_organism_name: Salmonella sp. 2269

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Blautia producta

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: Nephrostomy catheter

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Neijiang; Sichuan Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Peribacillus sp. NJ4

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: surface soil

ncbi_organism_name: Paenibacillus pabuli

ncbi_submitter: Dalian University of Technology


ncbi_country: Russia: metallurgical enterprise area; Perm; Perm region

ncbi_isolation_source: heavy metal contaminated soil

ncbi_organism_name: Rhodococcus sp. IEGM 1354

ncbi_strain_identifiers: IEGM 1354

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 1354


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora mooreana

ncbi_refseq_category: reference genome

ncbi_submitter: JGI


ncbi_country: Russia: Irkutsk

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Irkutsk Antiplague Research Institute of Siberia and Far East


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain

ncbi_isolation_source: cloaca from white stork nestling

ncbi_submitter: University of La Rioja


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Serratia sp. LS-1

ncbi_submitter: Jiangxi Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. LS-1


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14222

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Litoreibacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium CG_4_10_14_0_2_um_filter_41_11


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: meat

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Providencia stuartii

ncbi_submitter: JMI Laboratories


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella sp. 97147

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sphingobacterium alimentarium


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Clostridium sp. CAG:492

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 monocultured in 8 g/ml imipenem treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China

ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;x__unclassified Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis complex sp. N0052


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Nonomuraea thailandensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-359

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3608

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Alphaproteobacteria bacterium UBA4436

ncbi_submitter: University of Queensland


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Italy: San Lorenzo di Sebato (BZ)

ncbi_organism_name: Clostridium botulinum C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: South Korea

ncbi_isolation_source: nuts

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Washington


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: South Korea: Incheon

ncbi_isolation_source: Sea

ncbi_organism_name: Catenovulum sediminis

ncbi_submitter: Myongji University


ncbi_isolation_source: bacterial strain isolated from fresh salmon

ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Ifremer


gtdb_type_species_of_genus: t

ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Russia: East Siberia

ncbi_isolation_source: low-mineralized lake

ncbi_organism_name: Ectothiorhodospira lacustris

ncbi_submitter: Bellevue University


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Institute of Environmental Science and Research (ESR)


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arthrobacter liuii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Sulfurihydrogenibium sp. YO3AOP1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Enterococcus faecium UC7267

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces sp. NPDC090108

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Streptomyces sp. NPDC006967


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA1576

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: LNCC


ncbi_country: New Zealand: Bay of Plenty

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Boseongicola sp.

ncbi_submitter: marine college, shandong university


ncbi_isolate: chicken fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of British Columbia


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_organism_name: Pseudarthrobacter oxydans


ncbi_organism_name: Pseudomonas sp. URIL14HWK12:I3

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Weifang

ncbi_isolation_source: sick pig lung

ncbi_submitter: University College London (UCL)


ncbi_country: Cambodia

ncbi_organism_name: Xanthomonas phaseoli pv. manihotis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: sediment

ncbi_organism_name: Robertkochia aurantiaca

ncbi_submitter: Sungkyunkwan university


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFOXYD1_FULL_47_14


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolate: Pseudomonas sp. Irchel s3a10

ncbi_organism_name: Pseudomonas sp. Irchel s3a10

ncbi_strain_identifiers: Pseudomonas sp. Irchel s3a10

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Granulosicoccus sp.

ncbi_submitter: University of East Anglia


ncbi_country: Algeria

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: AHMED BEN BELLA UNIVERSITY OF ORAN


ncbi_organism_name: Nostoc sp. ChiQUE02

ncbi_submitter: LANGEBIO


ncbi_country: USA: Mississippi

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: USFDA


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: surficial creek

ncbi_organism_name: Candidatus Peribacterales bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__unclassified Candidatus Peribacterales;s__Candidatus Peribacterales bacterium


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_assembly_name: freshwater MAG --- KTt_bin-1074

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: saline water including plankton

ncbi_submitter: Uppsala University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Mexico: Hermosillo

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: INMEGEN-Mexico


ncbi_organism_name: Desulfomonilales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Dialister sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Atlantic Ocean: Off the west coast of Africa; continental slope between Cape Verde and the Canary Islands

ncbi_isolation_source: open ocean water

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Vibrio owensii

ncbi_submitter: University of Miyazaki


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Universidad de Antioquia


ncbi_country: France: Chassieu

ncbi_isolation_source: urban runoff waters

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Claude Bernard Lyon 1 university


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Alteromonas marina

ncbi_submitter: Ocean University of China


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolate: AOP5_GZ1_surf _bin _11

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP5_GZ1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Gopalganj Science and Technology University


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_submitter: Somov Institute of Epidemiology and Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: EMG


ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Mexico

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio sonorensis

ncbi_strain_identifiers: CAIM 1076

ncbi_submitter: CIAD, A.C. Mazatlan Unit for Aquaculture


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL053PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas avellanae

ncbi_submitter: NIAB East Malling Research


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_organism_name: Lactococcus lactis


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei university college of medicine


ncbi_country: China: Tibet; Lhasa

ncbi_isolation_source: barley roots soil

ncbi_organism_name: Bacillus sp. NMTD17

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NMTD17


ncbi_country: Mexico: Mexico city

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Variovorax sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. XY533

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Campylobacteraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: Candidatus Hypereutrophica brisbanensis

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Hypereutrophica;s__Candidatus Hypereutrophica brisbanensis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_country: Germany

ncbi_isolation_source: Germany

ncbi_organism_name: Spirabiliibacterium falconis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: CA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Thammasat University


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Korea

ncbi_organism_name: Vagococcus hydrophili

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_organism_name: Niameybacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Lelliottia nimipressuralis


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter pylori


ncbi_isolation_source: Tsoundzou

ncbi_organism_name: Leptospira mayottensis

ncbi_submitter: Universite de La Reunion


ncbi_country: Russia: Moscow

ncbi_isolation_source: purulent synovial fluid

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_strain_identifiers: Schu S4

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis SCHU S4;x__Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-643


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides excrementavium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Palacky University Olomouc


ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Rahnella aceris

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salinarimonas sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2109


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P44RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P44RS


ncbi_isolation_source: library

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Shenzhen University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9095

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Chosun University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Norway

ncbi_isolation_source: gut

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Elanco Animal Health


ncbi_country: Thailand: Satun

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Zurich


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Tenacibaculum sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Germany

ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: China: Nanjing

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R973;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Fort McMurray; Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Anaerolineaceae bacterium UBA5199

ncbi_submitter: University of Queensland


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA

ncbi_isolation_source: Strip loin

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Hospital Universitario Miguel Servet (Zaragoza)

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: CNAG-CRG


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Ecuador: Esmeraldas

ncbi_isolation_source: human stool

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIMI


ncbi_country: China: Shanghai

ncbi_isolation_source: liver

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SHSN004


ncbi_country: Austria: Neusiedler See

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_organism_name: Eggerthella sinensis

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: isolated from Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_submitter: Medical University of Gdansk


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia sp. CC213A

ncbi_submitter: Tecnologico de Monterrey


ncbi_submitter: University of California at Davis


ncbi_isolation_source: lab variant

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_organism_name: Collinsella sp. LCP19S3_D3

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: pea nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: Universidad Politecnica de Madrid


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. B21-105

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Kangwon National University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: Eugene

ncbi_isolation_source: indoor dust from athletic faciility

ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: Northwestern University


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Oxford


ncbi_country: Turkey: Giresun city; Blue Lake; Soda Lake

ncbi_isolation_source: water

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UTM


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Colombia: Bogota

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanleyville


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: New Mexico; Sevilleta Desert

ncbi_isolation_source: desert soil

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of New Hampshire


ncbi_country: South Korea: southern coast; Gwangyang Bay

ncbi_isolation_source: seawater

ncbi_organism_name: Paraurantiacibacter namhicola

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Gimesia chilikensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Streptomyces sp. NPDC048565

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of South China


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pistachio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: ICU - unoccupied bed

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus hominis


ncbi_isolation_source: fermented sausages

ncbi_organism_name: Weissella minor

ncbi_submitter: Shanghai Majorbio


ncbi_assembly_name: Rumen uncultured genome RUG10158

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Saudi Arabia

ncbi_isolation_source: Lungs

ncbi_organism_name: Mycobacterium riyadhense

ncbi_strain_identifiers: NTM

ncbi_submitter: King Faisal Specialist Hospital and Research Centre


ncbi_organism_name: Sutterella wadsworthensis


ncbi_country: Belgium

ncbi_submitter: Sciensano


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Micromonosporaceae bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Soil

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-02-F04-AA

ncbi_submitter: Arkin Lab


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W21479

ncbi_submitter: Broad Institute


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei RF43Bp22

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides finegoldii CL09T03C10


ncbi_organism_name: Atribacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_country: Italy: Bologna

ncbi_isolation_source: water

ncbi_organism_name: Legionella sp. 16cNR16C

ncbi_submitter: University of Bologna


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: center of biotechnology of sfax


ncbi_country: China: Jiangsu

ncbi_isolation_source: brain

ncbi_organism_name: Campylobacter fetus subsp. fetus

ncbi_submitter: Yangzhou university


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University Putra Malysia


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3518


ncbi_country: France

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia aldovae

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Varibaculum timonense

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Natronospirales bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Novosphingobium sp. Chol11


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Chryseotalea sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: Malayan pangolin

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Thioalkalivibrio sulfidiphilus HL-EbGr7

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA: Connecticut; Glastonbur

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Montreal


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dokdonia sp.

ncbi_submitter: EMG


ncbi_country: China: Hubei; Jianli

ncbi_organism_name: Riemerella anatipestifer

ncbi_strain_identifiers: RA-JLLY

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: FSBSI Institute of Experimental medicine


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Toho University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: University of California School of Medicine

ncbi_isolation_source: laboratory

ncbi_submitter: University of Warwick


ncbi_organism_name: [Eubacterium] siraeum


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Clostridium sp. CAG:413

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Faculty of Sciences of Gafsa


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Finland: Karstula

ncbi_isolation_source: stream water

ncbi_organism_name: Mycobacterium palustre

ncbi_submitter: University of Trento


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_organism_name: uncultured Tangfeifania sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Actinobacillus delphinicola

ncbi_submitter: University of Copenhagen


ncbi_isolate: AOP19_E1_surf _bin _18

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: AOP19_E1_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Shouchella clausii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ethiopia: Tigray; Central Tigray; Slehleka

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_assembly_name: freshwater MAG --- Loclat_bin-19408

ncbi_submitter: BILS


ncbi_organism_name: Megasphaera massiliensis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Bacillus cereus group sp. MYBK132-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK132-2


ncbi_assembly_name: Rumen uncultured genome RUG10976

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R913;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium tagatosivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Providencia manganoxydans


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Aeromicrobium wangtongii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Holophagales bacterium UBA2201

ncbi_submitter: University of Queensland


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya: Lwak

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Belgium

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_strain_identifiers: Los Angeles 1

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: China: Beijing

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 226

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 4705

ncbi_submitter: University of Calgary


ncbi_country: USA: Texas

ncbi_isolation_source: Simulated distribution system annular reactor

ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Morganella morganii

ncbi_submitter: Ares Genetics


ncbi_assembly_name: Rumen uncultured genome RUG10075

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Pannonibacter sp. SL95

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Yunchengibacter salinarum

ncbi_submitter: Yuncheng University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Ecuador: Quito

ncbi_submitter: Universidad San Francisco de Quito


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UMR 1137 IAME


ncbi_country: Canada: Alberta

ncbi_submitter: Government of Alberta


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human skin

ncbi_organism_name: Lacicoccus qingdaonensis

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Seawater

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus RF122

ncbi_submitter: Univ. Minnesota


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Norway

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: UiT The Arctic University of Norway


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPLOWO2_01_FULL_46_26


ncbi_assembly_name: freshwater MAG --- Day2-4_bin-230

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: South China Agriculture University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- A3_bin-002

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Brevundimonas poindexterae

ncbi_submitter: Xiamen University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2603880199 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFIX49

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Australia: Newcastle


ncbi_country: Brazil: Mato Grosso do Sul

ncbi_organism_name: Rhizobium sp. CNPSo 3968

ncbi_strain_identifiers: CNPSo 3968

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Greece: Spata

ncbi_isolation_source: leaves; endophytic

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Agricultural University of Athens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: Canada: Toronto

ncbi_isolation_source: Assorted Sub Meats

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Arthrobacter sp. NPDC058130

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Streptomyces sp. NPDC090132


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Tennessee

ncbi_isolation_source: cerebral spinal fluid (CSF)

ncbi_organism_name: Chryseobacterium shandongense

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Paenibacillus sp. CC-CFT742

ncbi_submitter: Nation Chung Hsing University


ncbi_organism_name: Streptomyces sp. GSL17-111

ncbi_submitter: University of Utah


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: feed

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus sp. HMSC034B04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: passage 50 in MRS medium of strain P-8

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: FONDAZIONE EDMUND MACH


ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: United Kingdom: Irvine; Scotland

ncbi_isolation_source: foam; activated sludge plant

ncbi_organism_name: Gordonia paraffinivorans

ncbi_strain_identifiers: IEGM 735

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: New Zealand

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Massey University


ncbi_country: Norway

ncbi_isolation_source: Intestine

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Ireland

ncbi_isolation_source: Environment (waste water)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 44.E.09


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Manitoba

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptococcus parasuis


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Streptomyces olindensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Arthrobacter gyeryongensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_37_16


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa:Brits

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: New Orleans; LA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: SAR202 cluster bacterium bin87

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium bin87


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Teat swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_submitter: Cornell University


ncbi_country: Namibia: Etosha National Wild Park

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: CEES, Department of biosciences, University of Oslo


ncbi_country: China: Inner Mongolia Autonomous Region

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: China: Huainan

ncbi_isolation_source: coal samples cultured in anaerobic conditions in minimal salts plus yeast media

ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Anhui University of Science & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: lake water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculum sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention