ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Scardovia inopinata F0304

ncbi_submitter: Broad Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: feces

ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Center for Bioinformatics


ncbi_assembly_level: Contig

ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


gtdb_representative: t

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_43_16


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: Blautia producta

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Blautia equi

ncbi_submitter: Quadram Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_level: Complete Genome

ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: South Africa

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Francisella salina

ncbi_refseq_category: reference genome

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacillus anthracis str. Vollum

ncbi_strain_identifiers: Vollum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Vollum


ncbi_country: United Kingdom

ncbi_isolation_source: blood


ncbi_assembly_name: Leuconostoc

ncbi_submitter: Copenhagen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;s__Leuconostoc mesenteroides;sb__Leuconostoc mesenteroides subsp. cremoris;x__Leuconostoc mesenteroides subsp. cremoris T26


ncbi_country: China: Guangdong province

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: BGI


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Geothrix sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Phocaeicola massiliensis


ncbi_organism_name: Actinomycetospora sp. CA-053990

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Mycobacteriaceae bacterium NPDC060252

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ornithinimicrobium sp. Y1694

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Kitasatospora sp. NPDC059160


ncbi_submitter: Xinjiang Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kitasatospora sp. NPDC059811


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Mycobacteriaceae bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: DTU


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Paenibacillus sp. 1-18

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 987421

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: wound

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter bereziniae;x__Acinetobacter bereziniae LMG 1003 = CIP 70.12


ncbi_country: China: Shanghai

ncbi_submitter: Huadong Hospital Affiliated to Fudan University


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lethbridge Research Centre


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes SHL017

ncbi_submitter: University of Maryland, College Park


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_submitter: University of Balamand


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Colombia: Valle del Cauca

ncbi_organism_name: Kluyvera sp. Nf5

ncbi_submitter: Georgia Institute of Technology


ncbi_strain_identifiers: LQC 10

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. LQC 10


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenyang

ncbi_isolation_source: blood/urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 449


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Veillonella ratti

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Colombia: Municipio Dibulla

ncbi_isolate: CoFLP

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_strain_identifiers: CoFLP

ncbi_submitter: Zhejiang A&F University


ncbi_assembly_name: De novo assembly of KCRI isolate RDK39_45

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_submitter: City University of Hong Kong


ncbi_country: China: Haima hydrocarbon seep

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Ruthturnera sp. Tsphm01

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthturnera sp. Tsphm01


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Providencia vermicola

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: river water

ncbi_submitter: University of Georgia


ncbi_country: China: Shanghe County; Jinan City; Shandong Province

ncbi_isolation_source: wheat root

ncbi_organism_name: Paenibacillus peoriae

ncbi_submitter: Shandong Academy of grape


ncbi_organism_name: Holosporales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Jharkhand; Bokaro; Khetko

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Campylobacter rectus


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Chryseobacterium sp. YIM B08800

ncbi_submitter: Yunnan Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;x__unclassified Chryseobacterium;s__Chryseobacterium sp. YIM B08800


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Cork

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University College Cork


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: India: Pune

ncbi_isolation_source: Probiotic Capsule

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_type_species_of_genus: t

ncbi_organism_name: Scardovia inopinata JCM 12537

ncbi_submitter: Graduate School of Frontier Sciences, University of Tokyo


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Stockholm University


ncbi_organism_name: Methylosinus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolation_source: lung of a goat with pneumonia

ncbi_organism_name: Mesomycoplasma ovipneumoniae SC01

ncbi_submitter: Beijing Genome Institute


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_country: Spain: Asturias

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Collimonas fungivorans Ter331

ncbi_submitter: Netherlands Institute of Ecology (NIOO-KNAW)


ncbi_assembly_name: IMG-taxon 2616645019 annotated assembly

ncbi_organism_name: Fictibacillus enclensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-105-05_S4_C3

ncbi_submitter: IGS


ncbi_organism_name: Puia sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Davis city on Yolo county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Taiwan: New Taipei

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Providencia heimbachae

ncbi_submitter: University of Georgia


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Nigeria: Kano

ncbi_isolation_source: hospital bed

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: IY-BUK 1a

ncbi_submitter: Robert Koch Institute, Germany


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_40_130


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptomyces sp. NPDC055966

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: Cochin University of Science and Technology


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured candidatus Porisulfidus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__Chromatiales incertae sedis;x__Candidatus Porisulfidus;x__environmental samples;s__uncultured candidatus Porisulfidus sp.


ncbi_country: Germany: Bavaria

ncbi_isolation_source: salami

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: GA

ncbi_isolation_source: ready to eat deli meat ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Parvimonas micra

ncbi_submitter: China CDC


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Bifidobacterium leontopitheci

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_country: USA: Kinney County; TX

ncbi_organism_name: Mesoplasma tabanidae

ncbi_strain_identifiers: BARC 857

ncbi_submitter: Academia Sinica


ncbi_country: USA: Oregon

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Nan Jing

ncbi_isolation_source: Blood culture medium

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWB1_40_11


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_assembly_level: Chromosome

ncbi_country: USA: Texas

ncbi_isolation_source: leaf

ncbi_organism_name: Paracidovorax avenae

ncbi_submitter: Michigan State University


ncbi_organism_name: Pseudoalteromonas sp. '520P1 No. 423'

ncbi_submitter: Kochi University of Technology


ncbi_country: Montenegro

ncbi_isolation_source: environmental

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: University of Donja Gorica


ncbi_country: Iran

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: San Raffaele Scientific Institute


ncbi_organism_name: Campylobacter concisus


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: midgut content

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Nocardia seriolae

ncbi_submitter: Anhui Agricultural University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Denitromonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus roterodami

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: India: Kodungallur; Kerala

ncbi_isolation_source: shrimp

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_organism_name: Kutzneria viridogrisea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Flaviaestuariibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CSIR-Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_assembly_name: IMG-taxon 2602042106 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: San Joaquin County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Biofilm in livestock wastewater treatment plant

ncbi_organism_name: Candidatus Jettenia sp.

ncbi_submitter: Technion-israel institute of technology

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;x__unclassified Candidatus Jettenia;s__Candidatus Jettenia sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Maridesulfovibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Shinella sp.

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_assembly_name: IMG-taxon 2545555813 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAIL14HWK12:I4


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 283

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. BCW_6871

ncbi_submitter: University of California at Davis


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-133

ncbi_submitter: Broad Institute


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_country: Luxembourg

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of New South Wales


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL079

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL079


ncbi_organism_name: Pelagibacterium halotolerans

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: naresuan university


ncbi_organism_name: Staphylococcus sp. KUGN1

ncbi_submitter: kuwait university


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cupriavidus respiraculi

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: CSIRO


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: Deep sea sediments

ncbi_organism_name: Tenacibaculum mesophilum

ncbi_submitter: Xiamen University


ncbi_isolation_source: sea water

ncbi_organism_name: Alteromonas stellipolaris LMG 21856

ncbi_submitter: Zhejiang Wanli University


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Rostov region

ncbi_isolation_source: Food products (beef)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SRCAMB


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human skin

ncbi_organism_name: Rhodococcoides kroppenstedtii

ncbi_submitter: NIH/NHGRI


ncbi_country: Turkey: Ankara

ncbi_isolation_source: blood culture; Ankara

ncbi_submitter: Ankara Yildirim Beyazit University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: stream sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Florida

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Northwestern University


ncbi_assembly_name: freshwater MAG --- KTt_bin-2769

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: India: Gujarat

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_assembly_name: Iowa-C.bilis 1

ncbi_organism_name: Campylobacter bilis

ncbi_submitter: Iowa State University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Mexico: Altamirano; Guerrero

ncbi_organism_name: Sinorhizobium terangae

ncbi_submitter: Murdoch University


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Malacoplasma iowae

ncbi_submitter: MolliScience Kft.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Technical University of Munich


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Mycobacterium pseudoshottsii

ncbi_submitter: Graduate School of Human Life and Ecology, Osaka Metropolitan University


ncbi_country: China: Guizhou province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: South Korea: Namjeju

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Serratia nevei

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0486

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Parolsenella catena

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_FULL_45_28


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 50m

ncbi_organism_name: Erythrobacter sp. REDSEA-S36_B6

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: China: Beijing

ncbi_organism_name: Terrisporobacter mayombei

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Finger

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Micrococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_submitter: University of Pretoria


ncbi_country: China: Quanzhou

ncbi_isolation_source: urine

ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: The First Quanzhou Hospital


ncbi_isolation_source: milk from an udder

ncbi_organism_name: Streptococcus uberis S6261

ncbi_submitter: University of Nottingham


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Nanyang Technological University


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: Argentina

ncbi_organism_name: Burkholderia gladioli pv. gladioli

ncbi_submitter: Instituto de Investigaciones en Biociencias Agricolas y Ambientales


ncbi_assembly_name: Rumen uncultured genome RUG11849

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Greece

ncbi_submitter: bioMerieux


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: college of veterinary medicine


ncbi_organism_name: Rhodococcus sp. NPDC057529

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC057529


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: uncultured Ilyobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Azerbaijan: Salyan region

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Capnocytophaga sputigena


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-204

ncbi_submitter: JCVI


ncbi_organism_name: Paenibacillus sp. FSL R5-0519

ncbi_submitter: Penn State


ncbi_country: China: Quanzhou Bay

ncbi_isolation_source: Coastal sediment

ncbi_organism_name: Aestuariivivens marinum

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Burkholderiales bacterium JOSHI_001

ncbi_submitter: JGI


ncbi_country: South Korea:Busan

ncbi_isolation_source: Sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Basic Science Institute


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium sp. 401_CJEI

ncbi_submitter: University of Washington


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Enterobacter cloacae complex sp. 339J8

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 339J8


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Bradyrhizobium sp. vgs-9

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_submitter: Su Dong


ncbi_organism_name: Candidatus Electronema sp. JC

ncbi_strain_identifiers: JC

ncbi_submitter: Guangdong University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Candidatus Electronema;x__unclassified Candidatus Electronema;s__Candidatus Electronema sp. JC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Siena


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA5224

ncbi_submitter: University of Queensland


ncbi_country: Spain: Asturias

ncbi_isolation_source: raw milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: IPLA-CSIC


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Italy: Ionian Sea

ncbi_isolation_source: Ionian sea from 3500 m depth

ncbi_organism_name: SAR202 cluster bacterium Io17-Chloro-G4

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium Io17-Chloro-G4


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Agarivorans sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC059455


ncbi_country: USA

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus Swab

ncbi_organism_name: Helcococcus kunzii

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: SC


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Antarctica

ncbi_isolation_source: organomineral substrate

ncbi_organism_name: Massilia sp. CCM 8734

ncbi_submitter: Masaryk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;x__Telluria group;g__Massilia;x__unclassified Massilia;s__Massilia sp. CCM 8734


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: ProBone


ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: carcass

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: New York; NY

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: aquatic

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Belgium

ncbi_isolation_source: nodule; non-axenic culture

ncbi_organism_name: Neorhizobium sp. SHOUNA12B

ncbi_submitter: VIB - UGent


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kordiimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA:Washington:Hanford 300 Area; IFRC

ncbi_isolation_source: ground water

ncbi_organism_name: Patescibacteria group bacterium UBA5004

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA5004


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Beijing

ncbi_organism_name: Pectobacterium odoriferum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolation_source: Cow

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Spirochaeta isovalerica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Taizhou University


ncbi_organism_name: Sneathia vaginalis

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: Dongduk Women's University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5375


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kitasatospora sp. NPDC089797

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Venezuela

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: zhejiang University


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Streptomyces sp. NPDC047802


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 321

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 321


ncbi_organism_name: uncultured Candidatus Gallimonas sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;x__environmental samples;s__uncultured Candidatus Gallimonas sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: endosphere environment

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: NIOO KNAW


ncbi_organism_name: Paraclostridium sordellii


ncbi_country: Kenya: Kilifi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Spongiibacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Liaohe Oil Field; Liaoning

ncbi_isolation_source: petroleum-contaminated soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Central South University


ncbi_organism_name: Rhizorhabdus argentea

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4062

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz R154

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz R154


ncbi_organism_name: uncultured Pseudohongiella sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: Clean room floor at NASA Jet Propulsion Laboratory

ncbi_organism_name: Tersicoccus phoenicis

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: The University of Queensland


ncbi_country: Kenya

ncbi_isolation_source: camelid milk; raw single animal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC059810

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: INSTITUTE OF URBAN ENVIRONMENT CAS


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Sphingobacterium spiritivorum


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 239

ncbi_submitter: National Institute for Communicable Diseases


ncbi_assembly_name: Rumen uncultured genome RUG14218

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus BAG2O-1

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG2O-1


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Woods Hole; MA

ncbi_isolation_source: littoral water sample

ncbi_organism_name: Cobetia marina

ncbi_submitter: Ocean university of China


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Oxford


ncbi_country: Somalia

ncbi_organism_name: Brucella melitensis UK14/06


ncbi_isolation_source: Vagina

ncbi_organism_name: Prevotella bivia

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Blautia faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1110700610


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: Sewage

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Bharat


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nostocoides australiense Ben110

ncbi_submitter: Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: South Korea:Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hallym University College of Medicine


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_strain_identifiers: NY_FSL C7-650

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Holcomb


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingomonas sp. CCH20-B6

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacterium multivorum


ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Dairy

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Reyranella sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: USAMRD-A


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Western Australia

ncbi_submitter: Curtin University


ncbi_organism_name: Deinococcus deserti VCD115

ncbi_submitter: Genoscope


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: USA

ncbi_isolation_source: marine water

ncbi_organism_name: Cloacibacterium normanense

ncbi_strain_identifiers: IMET F

ncbi_submitter: INSTITUTE OF MARINE AND ENVIRONMENTAL TECHNOLOGY


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Liptonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Liptoniibacteriota;x__unclassified Candidatus Liptonbacteria;s__Candidatus Liptonbacteria bacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Poland: Koszalin

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Thailand: Khonkaen

ncbi_isolation_source: meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Public Health


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0486R

ncbi_submitter: Broad Institute


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Demequinaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA2077

ncbi_submitter: University of Queensland


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: New Zealand

ncbi_isolation_source: soil

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil middle density fraction time point 6 weeks

ncbi_organism_name: Inquilinus limosus

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Serpentinimonas barnesii

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx


ncbi_submitter: University of Michigan


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ningbo University


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas axonopodis pv. phyllanthi

ncbi_strain_identifiers: NCPPB 2066

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.2;x__Xanthomonas axonopodis pv. phyllanthi


ncbi_organism_name: Bacillus sp. N12A5

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N12A5


ncbi_organism_name: Rubrobacter xylanophilus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Clostridium baratii

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Pseudanabaena sp.


ncbi_organism_name: Stutzerimonas sp.

ncbi_submitter: Xiamen University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin55

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: LAG bin55


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_strain_identifiers: MCC 340

ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Antioquia; Medellin

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Antioquia


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Human feces

ncbi_organism_name: Lactococcus sp. LG606

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: India: Manikaran

ncbi_isolation_source: microbial mat of a hot water spring

ncbi_organism_name: Lampropedia cohaerens

ncbi_submitter: University of Delhi


ncbi_country: Ireland

ncbi_isolation_source: seafood factory FBO1

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterocloster lavalensis

ncbi_submitter: University of Copenhagen


ncbi_isolate: metabat2_6737_HOM_CTRL_metaflye.550 MAG

ncbi_organism_name: uncultured Alistipes sp.

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_metaflye.550 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_isolation_source: ice

ncbi_organism_name: Arthrobacter ruber

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Peru: Lima

ncbi_isolation_source: liver

ncbi_submitter: Universidad Nacional Mayor de San Marcos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul;x__Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA

ncbi_submitter: USDA


ncbi_country: Denmark

ncbi_organism_name: Elizabethkingia ursingii

ncbi_submitter: CDC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Argentina

ncbi_submitter: Public Health Ontario


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Iran: Kerman

ncbi_isolation_source: Barley

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: New Zealand

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: New Brunswick

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Health Canada


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Brazil: AMazonas; Iranbunda

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Lausanne


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_isolation_source: frozen soil

ncbi_organism_name: Acinetobacter sp. TGL-Y2

ncbi_submitter: Cold and Arid Regions Environmental and Engineering Research Institute


ncbi_country: Spain

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Sevilla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHU A Coruna


ncbi_isolation_source: agitator drain in a food-processing plant

ncbi_organism_name: Pseudomonas sp. FSL W5-0299

ncbi_submitter: Cornell University


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Escherichia coli O78:H12 str. 00-3279

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O78:H12;x__Escherichia coli O78:H12 str. 00-3279


ncbi_country: Germany: Thuringia

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University Hospital Jena


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: EMG


ncbi_country: Estonia: Tartumaa; Laeva vald

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Janibacter melonis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Frigidibacter sp. MR17.14

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thalassospira sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella sp. 90675

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Paenibacillus sp. FSL E2-0230

ncbi_submitter: Penn State


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1189

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1189


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Desulfovibrionales bacterium


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: India: Yumthang; Sikkim

ncbi_isolation_source: Yak feces

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: JNTUH


ncbi_country: China: Poyang Lake; Jiangxi Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Kocuria sp. cx-455

ncbi_submitter: China CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Kocuria sp. cx-455


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_organism_name: Streptococcus sp. 27098_8_74

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Mexico

ncbi_isolation_source: environmental material [ENVO:00010483]

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: CENTRO DE INVESTIGACION EN ALIMENTACION Y DESARROLLO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Norway

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Acidovorax sp. WCS2018Cala2-18

ncbi_submitter: Utrecht University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Anaeroglobus geminatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute