ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: the Pearl River Estuary

ncbi_genome_representation: full

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Bacillus infantis

ncbi_submitter: China CDC


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dialister sp.


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Hong Kong

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus VIP4-0430

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VIP4-0430


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Campylobacter fetus subsp. fetus

ncbi_submitter: QAAFI


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Portugal: Algarve

ncbi_isolation_source: Sea cave

ncbi_organism_name: Cobetia sp. 1CM21F

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: vaginal swab sample

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: University of Saskatchewan


ncbi_country: Czech Republic

ncbi_isolation_source: gills

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: Ezakiella coagulans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;s__Ezakiella coagulans


gtdb_representative: t

ncbi_isolate: metabat2_6737_HOM_CTRL_hicanu.147 MAG

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_hicanu.147 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: hospital surface

ncbi_organism_name: Acinetobacter johnsonii TG19625

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The first hospital of Shanxi Medical University


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education & Research, Chandigarh


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Kluyvera sp. NPDC087067

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: American Samoa

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Oscillatoria sp. SIO1A7

ncbi_submitter: UCSD


ncbi_assembly_level: Chromosome

ncbi_country: France:Corsica; Haute-Corse

ncbi_strain_identifiers: Dco

ncbi_submitter: Electronics-Inspired Interdisciplinary Research Institute, Toyohashi University of Technology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura (Diaphorina cf. continua)


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Venezuela: Caracas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: RWTH Aachen University Hospital

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: plant

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: USA: CA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: FL

ncbi_isolation_source: water

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Spain

ncbi_organism_name: Chryseobacterium viscerum

ncbi_refseq_category: reference genome

ncbi_submitter: Korea university


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Zhejiang

ncbi_isolation_source: draining liquid of kidney transplantation recipient

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_submitter: WTSI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: China


ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dialister invisus


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: aquatic

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Photorhabdus sp. RM105S

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_organism_name: Aequorivita viscosa

ncbi_submitter: Ocean University of China


ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: Drexel University College of Medicine


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0181

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Sphingobacterium prati

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_strain_identifiers: CFBP 5130

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 5130


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: Escherichia coli CVM N34351PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N34351PS

ncbi_submitter: FDA


ncbi_isolation_source: activated sludge of wastewater treatment plants

ncbi_organism_name: Sphingobium sp. CAP-1

ncbi_submitter: State Key Laboratory of Urban Water Resource and Environment, School of Environment


ncbi_country: Poland: Myslenice

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Medicines Institute


ncbi_country: China: Yangjiang


ncbi_country: Viet Nam

ncbi_isolation_source: Nem chua (fermented pork)

ncbi_organism_name: Lacticaseibacillus porcinae

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Baekduia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bela-Bela

ncbi_organism_name: Achromobacter sp. Bel

ncbi_strain_identifiers: Bel

ncbi_submitter: University of Johannesburg


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: Port crew quarters; bump out exterior aft wall Node 2

ncbi_organism_name: Pantoea piersonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Singapore

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: SGH 46 pre

ncbi_submitter: The University of Sydney


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Kosovo

ncbi_organism_name: Brucella melitensis F8/01-155

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic: Hradcany

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Pseudomonas veronii 1YB2

ncbi_submitter: Bacterial Abiotic Stress and Survival Improvement Network


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Mahidol University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Halanaerobiaceae bacterium ANBcel28

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Israel: Kibutz Mishmar HaEmek

ncbi_isolation_source: dairy farm

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Agricultural Research Organisation


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: caries lesion

ncbi_organism_name: Streptococcus ratti FA-1 = DSM 20564

ncbi_submitter: Institute of Bioprocess and Biosystems Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ratti;x__Streptococcus ratti FA-1 = DSM 20564


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA

ncbi_isolation_source: Infective endocarditits

ncbi_organism_name: Streptococcus sp. 1643

ncbi_submitter: The University of Texas at Dallas


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Thiomicrolovo subterrani

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV270

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: USA: OH

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: lung

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: SICHUAN AGRICULTURAL UNIVERSITY


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Weifang People's Hospital


ncbi_assembly_name: Salmonella enterica CVM N44715 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: University of Luebeck


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_44_22


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 2

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Blautia producta

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Henan


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gyeonggi

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Chung-Ang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_assembly_name: freshwater MAG --- LJ_bin-2140

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: OPTIMISTICC


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Florence


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: Bielefeld University


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: France: Col du Grand Saint Bernard

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: NRRL BD-153

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Johannesburg


ncbi_country: USA: TX

ncbi_organism_name: Listeria farberi

ncbi_submitter: Cornell University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: exterior surface of the shell of an abalone sold in a fish market in Tokyo; Japan

ncbi_organism_name: Cobetia sp. AM6

ncbi_submitter: Division of Chemistry, Faculty of Science, Hokkaido University


ncbi_isolation_source: Columbia River estuary; salinty 5

ncbi_organism_name: Thermus thermophilus

ncbi_submitter: University of Queensland


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Variovorax paradoxus 4MFCol3.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Argentina

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_submitter: DTU Bioinformatics


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0109

ncbi_submitter: Broad Institute


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminococcus sp.


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Brazil: AMazonas; Iranbunda

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillaceae bacterium L1_55_11

ncbi_submitter: University of Lausanne


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas sp. Env-66

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Neorhizobium sp. LMR1-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli O157:H7 str. EC4042

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EC4042


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. B-M10

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Salmonella sp. NW454

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Victoria; Mud Island

ncbi_submitter: Federation University Australia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bahrenfeld


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_organism_name: Rhizobium lentis

ncbi_strain_identifiers: SEMIA 4036

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: HCA5 bin21

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_strain_identifiers: HCA5 bin21

ncbi_submitter: China Agricultural University


ncbi_country: China: Xiangtan City

ncbi_organism_name: Streptomyces koelreuteriae

ncbi_submitter: Hunan University of Science and Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Uppsala University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp74


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Nagoya University


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_7 WWTPs influent

ncbi_submitter: The University of Hong Kong


ncbi_country: Croatia

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium redzepovicii

ncbi_submitter: CSIC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1547

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Seoul

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea University


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Exiguobacterium sp. s192

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s192


ncbi_country: Austria: Vienna

ncbi_isolation_source: Pleura effusion

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_assembly_name: JGI assembly

ncbi_country: India: Orissa

ncbi_isolation_source: sediment from sulfur spring

ncbi_organism_name: Chelatococcus sambhunathii

ncbi_submitter: DOE - Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Yangjiang

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Stool

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: IP


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_assembly_name: freshwater MAG --- A14_bin-0213

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Almond orchard

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;x__unclassified Candidatus Polarisedimenticolaceae;s__Candidatus Polarisedimenticolaceae bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: kaburazushi

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: University College Cork


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. Root564

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Moraxella sp. CTOTU47915


ncbi_country: China: Liaoning

ncbi_submitter: China Agricultural University


ncbi_country: China: Panjin

ncbi_organism_name: Oerskovia turbata

ncbi_submitter: Dalian University of Technology


ncbi_submitter: Shanghai Academy of Agricultural Sciences, China


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3290

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3290


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares Swab

ncbi_organism_name: Dermabacter hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Salmonella sp. 741265075_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_submitter: Kenya Medical Research Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome hRUG885

ncbi_organism_name: uncultured Negativicutes bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__environmental samples;s__uncultured Negativicutes bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: fecal samples

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Germany: Widdersdorf

ncbi_organism_name: Nocardioides sp. Root224

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Helcobacillus sp. ACRRO

ncbi_strain_identifiers: ACRRO

ncbi_submitter: NHGRI/NIH


ncbi_assembly_name: freshwater MAG --- LJ_bin-0915

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Marinilactibacillus psychrotolerans

ncbi_submitter: Agroscope


ncbi_organism_name: Paenibacillus lactis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Naasia sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Netherlands

ncbi_organism_name: Clostridium novyi A str. GD211209

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium novyi;x__Clostridium novyi A;x__Clostridium novyi A str. GD211209


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Cupriavidus taiwanensis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA: Florida

ncbi_isolation_source: brain tissue

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: University of Florida


ncbi_country: USA: GA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. KCTC 23674

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter;x__unclassified Hymenobacter;s__Hymenobacter sp. KCTC 23674


ncbi_organism_name: Enterococcus sp. C3

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 98-2

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: condensed milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_assembly_name: BFW

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Ghana

ncbi_isolation_source: cocoa fermentation

ncbi_organism_name: Liquorilactobacillus ghanensis DSM 18630

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: GM-anode biofilm

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Queensland


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium sp.


ncbi_strain_identifiers: PEER 619

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: USA: PA

ncbi_isolation_source: intestine porcine (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Feces of healthy 12 day male infants

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Pseudonocardia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Iowa state University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides muris (ex Afrizal et al. 2022)


ncbi_country: Viet Nam

ncbi_isolation_source: Stool

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myroides pelagicus

ncbi_submitter: Zhejiang university


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Spleen

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Malaya


ncbi_submitter: Fudan University


ncbi_country: Belgium

ncbi_isolation_source: a denitrification reactor

ncbi_organism_name: Thermomonas brevis

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Microbiology


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: fecal sample

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Xanthomonas campestris pv. nigromaculans

ncbi_strain_identifiers: NCPPB 1935

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Tengchong; Jinze hot spring

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Tardiphaga sp. 803_E3_N1_3

ncbi_submitter: VIB


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: BOWEN UNIVERSITY


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: General University Hospital of Patras


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea: Cheongju

ncbi_organism_name: Lacticaseibacillus rhamnosus GG

ncbi_strain_identifiers: GG

ncbi_submitter: Chungbuk National University


ncbi_country: France: Le Lauzet-Ubaye

ncbi_isolation_source: river water

ncbi_organism_name: Pseudomonas congelans

ncbi_submitter: University of Arizona


ncbi_country: Brazil: Anama; Amazonas

ncbi_isolation_source: plant

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: CNPq/UFRPE process nº 143017/2016-0


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Paramount; CA

ncbi_isolation_source: conjunctivitis

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard Medical School / Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: Hamstring

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae U-0608239

ncbi_submitter: Uppsala University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 323

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: China

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Maribacter sp. PR66

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 416

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 2450

ncbi_submitter: University of Calgary


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Nanosynbacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp.


ncbi_country: Germany: Langen

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: USA: Beltsville; Maryland

ncbi_organism_name: Mesoplasma florum

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Mageeibacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Coprobacter fastidiosus

ncbi_submitter: EMG


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: ICMP 6277

ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: ICMP 6277

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


gtdb_type_species_of_genus: t

ncbi_organism_name: Frigoribacterium faeni

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Aeriscardovia sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium 1XD42-76

ncbi_submitter: Chinese Academy of Science


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Dechloromonas sp.

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: China: Shenzhen

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: JiLin Agricultural Science and Technolog


ncbi_organism_name: Streptomyces sp. NPDC002181

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Corynebacterium resistens DSM 45100

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Divison of Bacterial Diseases, Centers for Disease Control


ncbi_organism_name: Thioalkalivibrio sp. AL21

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Australia: Sydney

ncbi_isolation_source: clinical sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_country: Malaysia: Perak

ncbi_isolate: Perak

ncbi_organism_name: Rickettsia asembonensis

ncbi_strain_identifiers: Perak

ncbi_submitter: University of Liverpool


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Oregon State University


ncbi_country: USA:Pulley Ridge

ncbi_isolation_source: marine sponge

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Florida Atlantic University


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: Human saliva

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13095

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Romboutsia sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_assembly_name: freshwater MAG --- KT3_bin-246

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: National Medicines Institute


ncbi_country: Iraq: Baghdad

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Medicine/Al-Nahrain University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC059605

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: France: Villejuif

ncbi_isolation_source: Tumor MCA205 WT

ncbi_organism_name: Corynebacterium sp. ED61

ncbi_submitter: Institut Gustave Roussy


ncbi_country: China

ncbi_isolation_source: Deep Vein Catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: WI

ncbi_isolation_source: Young Turkeys

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59491F

ncbi_submitter: FDA


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Candidatus Thioglobus sp. MED-G23

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp. MED-G23


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Aarhus University


ncbi_country: Italy: Lucca

ncbi_isolation_source: blood

ncbi_submitter: University of Genoa


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. SJTUF15610

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Aminicenantales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;x__unclassified Candidatus Aminicenantales;s__Candidatus Aminicenantales bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Austria

ncbi_isolation_source: Medical Clinic for Small Animals

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Technische Universitaet Muenchen

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Genome Institute of Singapore


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: China: shallow coastal region of Nanya

ncbi_isolation_source: shallow coastal region

ncbi_organism_name: Spongiibacter taiwanensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Australia

ncbi_isolation_source: legume nodule

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation (CSIRO)


ncbi_organism_name: Agrobacterium salinitolerans

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Luteimonas dalianensis

ncbi_submitter: China CDC


ncbi_country: India

ncbi_isolation_source: chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Roseibacillus persicicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacillus paramobilis

ncbi_submitter: Texas A&M University, School of Vet Med


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: India: Christian Medical College; Vellore

ncbi_isolation_source: Suprapubic Aspirate

ncbi_organism_name: Yokenella regensburgei


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus UCIM6077

ncbi_submitter: Broad Institute


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Pus

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Fort Sam Houston

ncbi_isolation_source: chest tube

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Miami University


ncbi_organism_name: Mycolicibacter algericus

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: Wild adult 1.4

ncbi_organism_name: Sebaldella sp. S0638

ncbi_submitter: Texas State University


ncbi_country: France: Marseille

ncbi_isolation_source: Bronchial aspiration

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_submitter: Christian Medical College


ncbi_organism_name: Mycobacteroides abscessus 6G-0212

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: CCUG 27178 A

ncbi_organism_name: Neisseria cinerea

ncbi_strain_identifiers: CCUG 27178 A

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Lyngby; Small hill with plants just outside CFB (DTU campus). Plants were all very dark green. Soil clearly had lots of nutrients

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00193

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 43557_1


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: United Kingdom: WCO station L4

ncbi_isolation_source: L4 methanol SIP enrichment; time point 1; heavy DNA

ncbi_organism_name: Methylophaga thiooxydans

ncbi_submitter: University of East Anglia


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bizionia paragorgiae

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: Oklahoma; Stillwater

ncbi_isolation_source: gate

ncbi_organism_name: Pseudomonas moraviensis

ncbi_strain_identifiers: Devor

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Pantoea stewartii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Germany

ncbi_isolation_source: Edible insect Locusta migratoria (Pet Feed Store)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: South Africa: Mosvold Hospital - isolation ward

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0036

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Cervical lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: clinical

ncbi_submitter: OARSA, CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans;x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal677


ncbi_organism_name: Meridianimaribacter flavus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Slovenia

ncbi_isolation_source: Wound smear

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: nodules of Robinia pseudoacacia in mine tailing

ncbi_organism_name: Mesorhizobium amorphae CCNWGS0123

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio sp. Vb1980

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Candidatus Yonathbacteria bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;x__unclassified Candidatus Yonathbacteria;s__Candidatus Yonathbacteria bacterium


ncbi_country: China

ncbi_isolation_source: cow


ncbi_organism_name: Pseudoruegeria sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_assembly_name: freshwater MAG --- KTt_bin-1043

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-1412

ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Streptomyces sp. URMC 127

ncbi_strain_identifiers: URMC 127

ncbi_submitter: University of Rochester


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Aquitalea pelogenes

ncbi_submitter: Xiamen University


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonadales bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: Laval university


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AF12-41

ncbi_submitter: BGI


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Brazil: Regencia District; Espirito Santo State

ncbi_isolation_source: estuarine soil

ncbi_organism_name: Bacillus sp. 3a

ncbi_submitter: Universidad de La Frontera

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 3a


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: sediment

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Inner-Mongolia

ncbi_isolation_source: grassland soil

ncbi_organism_name: Paradesertivirga mongoliensis

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: EMG


ncbi_isolation_source: faecal

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: RJBFJ

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shinshu university hospital


ncbi_country: Czech Republic

ncbi_isolation_source: rectum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: Cupriavidus taiwanensis STM 8556

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis STM 8556

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Michigan

ncbi_organism_name: Enterococcus faecalis EnGen0238

ncbi_submitter: Broad Institute


ncbi_organism_name: Acutalibacter muris


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Singapore: Singapore General Hospital

ncbi_isolation_source: Endotracheal aspiration

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: MD

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Phocaeicola barnesiae


ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: USA: Nebraska

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: USA: Ennis; MT

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University


ncbi_organism_name: Ferirhizobium litorale

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_organism_name: Leptotrichia wadei

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas amygdali pv. aesculi

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. aesculi


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnoclostridium sp. UBA3262

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hainan

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus sp. 121

ncbi_submitter: Hainan Medical University-University


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Shandong

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_country: Brazil:Parana; Araucaria

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Ontario; Ottawa

ncbi_isolation_source: manure

ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: India

ncbi_isolation_source: chicken meat/poultry

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Germany

ncbi_organism_name: Corynebacterium ammoniagenes

ncbi_submitter: UniKlinik RWTH Aachen