ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Montoursville; Mill Creek

ncbi_genome_representation: full

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Pedobacter sp. MC2016-15

ncbi_submitter: Lycoming College


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli

ncbi_submitter: Research and Production Center for Microbiology and Virology


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Hyalomma scupense


ncbi_organism_name: Faecalibacterium sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0487

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Burkina Faso

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: blood

ncbi_organism_name: Morganella morganii subsp. morganii


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG14778

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: Chung Ang University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Pacific Norwthwest

ncbi_isolation_source: humeral membrane

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: University of Washington


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus cereus BAG3X2-2

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG3X2-2


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: USA: AL

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: USA: Arizona; Phoenix

ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0060


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0037


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Hunan Normal University


ncbi_country: United Kingdom

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: MER 110

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Jiangsu

ncbi_organism_name: Sorangium cellulosum

ncbi_submitter: Shandong University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dorea longicatena

ncbi_submitter: EMG


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Erwinia sp.


ncbi_isolation_source: medicine  BIOFLOR

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: Australia

ncbi_isolation_source: Patient with Diabetic ulcer

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Notre Dame


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Streptococcus pyogenes ABC020040643

ncbi_submitter: Broad Institute


ncbi_country: Kenya

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacteriaceae bacterium NR021

ncbi_submitter: University of Saskatchewan


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA36


ncbi_organism_name: Pseudomonas vlassakiae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Sneathiellaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 139

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 98

ncbi_submitter: Brigham Young University


ncbi_organism_name: Candidatus Dormibacteraceae bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;x__unclassified Candidatus Dormibacteraceae;s__Candidatus Dormibacteraceae bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BND

ncbi_submitter: The University of Adelaide


ncbi_country: China: Jiaxing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Germany

ncbi_isolation_source: human listeriosis

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Robert Koch Institute


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: Crohn s disease patient gut tissue biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Tenacibaculum sp.


ncbi_isolation_source: infant feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Nottingham


ncbi_organism_name: Paenibacillus sp. FSL R7-0189

ncbi_submitter: Penn State


ncbi_country: Russia: Ulan-Ude; Buryatia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: St Petersburg Pasteur Institute, St Petersburg, Russia


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Thiotrichales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Mailhella massiliensis


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: uncultured Streptomycetaceae bacterium


ncbi_country: Thailand: Pattani

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: South Africa: Msukaligwa; Sheepmoor Village

ncbi_isolation_source: soil

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: North-west University


ncbi_country: USA: Seattle

ncbi_isolation_source: throat of cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: New Hampshire

ncbi_isolation_source: ascending colon mucosa

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pediococcus parvulus

ncbi_submitter: University of Alberta


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFCSPLOWO2_12_FULL_40_19


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Serratia marcescens


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human blood

ncbi_organism_name: Microbacterium sp. Marseille-Q6648

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Sphingobium indicum BiD32

ncbi_submitter: MDA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium


ncbi_country: China: Tielong; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: South china normal university


ncbi_isolation_source: not provided

ncbi_organism_name: Lautropia mirabilis

ncbi_submitter: EMG


ncbi_country: Portugal

ncbi_organism_name: Streptococcus pneumoniae B605

ncbi_submitter: Allegheny Research Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_submitter: LSHTM


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: China: Shenzhen Children s Hospital

ncbi_isolation_source: stool

ncbi_submitter: ShenZhen Children's Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Xanthomonas cassavae CFBP 4642

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG13674

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_strain_identifiers: PAM 55

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria ivanovii;sb__Listeria ivanovii subsp. ivanovii;x__Listeria ivanovii subsp. ivanovii PAM 55

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Xinjiang; Changji

ncbi_isolation_source: Anal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


gtdb_type_species_of_genus: t

ncbi_country: China: the southern tip of Guangdong Province

ncbi_isolation_source: soil flooded by seawater

ncbi_organism_name: Novibacillus thermophilus

ncbi_refseq_category: reference genome

ncbi_submitter: Guangdong Institute of Eco-Environmental Science & Technology

ncbi_type_material_designation: assembly from type material


ncbi_isolate: SPRUCE 148

ncbi_organism_name: Thermoleophilia bacterium

ncbi_strain_identifiers: SPRUCE 148

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pyramidobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Ohio

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brevibacillus sp. BD137

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Dankook University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Pskov region

ncbi_isolation_source: Baked roll  Grilled perch

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Curtobacterium sp. HSID17257

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Salmonella sp. 741265099_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Cyanobacteria bacterium P01_F01_bin.56

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_F01_bin.56


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Australia: WA; DAFWA research station paddock 7a

ncbi_organism_name: Mesorhizobium sp. WSM4982

ncbi_submitter: Murdoch University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Kenya

ncbi_organism_name: Treponema sp. UBA785


ncbi_country: Czech Republic

ncbi_isolation_source: stool

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Brazil: Vacaria; Rio Grande do Sul (RS) State

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: UFRGS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Yantai University


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Rubrivivax gelatinosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: University Hospital Basel


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Mesorhizobium sp. 61-13

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Colorado State University


ncbi_country: Slovenia

ncbi_isolation_source: vinegar production

ncbi_organism_name: Komagataeibacter oboediens

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae UHKPC05

ncbi_submitter: JCVI


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: bitBiome, Inc.


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S086_02700

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus koreensis

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Flexilinea sp.


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Aquabacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_isolation_source: flower

ncbi_organism_name: Streptomyces sp. SID8377

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_isolation_source: groundwater

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Technical University of Munich


ncbi_country: China: Jiangmen

ncbi_isolation_source: aquaculture water

ncbi_organism_name: Inhella proteolytica

ncbi_submitter: Guangdong Academy of Sciences


ncbi_assembly_name: IMG-taxon 2681812890 annotated assembly

ncbi_organism_name: Pontibacter indicus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Priestia sp. 179-F W1.4 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. 179-F W1.4 NHS


ncbi_country: China: Sichuan

ncbi_isolation_source: Channa argus

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: University of Fribourg


ncbi_country: Germany

ncbi_isolation_source: duck with no clinical signs

ncbi_organism_name: Chlamydia psittaci WS/RT/E30

ncbi_submitter: University of Maryland, Baltimore


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SRCAMB


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Argentina: Lake Chascomus

ncbi_isolation_source: freshwater

ncbi_organism_name: Cyanobium sp. CH-040

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Afipia birgiae 34632

ncbi_submitter: ebi


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: IMG-taxon 2654587882 annotated assembly

ncbi_organism_name: Desulfoluna spongiiphila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Chelativorans sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: PA

ncbi_isolation_source: Trough water (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: University of Sheffield


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mangrove deep sediment

ncbi_organism_name: Mangrovibacterium lignilyticum

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources, China


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Isosphaeraceae bacterium


ncbi_country: Japan: Chiba Prejecture

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Desulfogranum marinum

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3986T(B)10

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3986T(B)10


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: University of Florida


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella bongori serovar 48:z35:-

ncbi_submitter: University of Zurich


ncbi_country: Spain

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_assembly_name: Rumen uncultured genome RUG11307

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Lethbridge Research Centre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Brachyspira sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: infection control

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: JCVI


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Salmonella sp. SAL04279

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Acholeplasmatales bacterium


ncbi_organism_name: Desulfobaccales bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Antarctica

ncbi_organism_name: Carnobacterium funditum DSM 5970

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Elizabethkingia sp. HX ZCH

ncbi_strain_identifiers: HX ZCH

ncbi_submitter: West China Hospital of Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;g__Elizabethkingia;x__unclassified Elizabethkingia;s__Elizabethkingia sp. HX ZCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0669

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D2_bin-0185

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-226


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces griseus subsp. griseus

ncbi_submitter: Brown University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;s__Streptomyces griseus;sb__Streptomyces griseus subsp. griseus


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Pseudomonas azotoformans NBRC 12693

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas azotoformans;x__Pseudomonas azotoformans NBRC 12693


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: skin pus

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. ECNIH10


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: FL; Apalachicola Bay

ncbi_isolation_source: oyster mantle fluid

ncbi_organism_name: Stutzerimonas stutzeri MF28

ncbi_submitter: University of Illinois at Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri MF28


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. Hh38

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: lung

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA:Woods Hole

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_strain_identifiers: ATCC 8483

ncbi_submitter: Washington University in St. Louis


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4837

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_genome_category: derived from single cell

ncbi_organism_name: alpha proteobacterium SCGC AAA027-L15

ncbi_strain_identifiers: SCGC AAA027-L15

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__unclassified Alphaproteobacteria;s__alpha proteobacterium SCGC AAA027-L15


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas sp.


ncbi_country: USA

ncbi_isolation_source: chicken breast

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen B

ncbi_organism_name: Tatumella sp. JGM16

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Achromobacter sp.


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: NC

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Brevibacterium sp. FME17

ncbi_submitter: INRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_assembly_name: freshwater MAG --- KR_bin-0199

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Tepidimonas sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__environmental samples;s__uncultured Tepidimonas sp.


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Liquorilactobacillus ghanensis

ncbi_submitter: Teagasc


ncbi_isolation_source: Complejo Asistencial Universitario de Salamanca (Salamanca)

ncbi_organism_name: Serratia marcescens

ncbi_submitter: CNAG-CRG


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium UBA5941


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: Lactobacillus agilis

ncbi_organism_name: Ligilactobacillus agilis

ncbi_strain_identifiers: Marseille

ncbi_submitter: URMITE


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Copenhagen


ncbi_country: Belgium

ncbi_isolation_source: microbial mat ULC186

ncbi_organism_name: Leptolyngbya sp.

ncbi_submitter: ULg


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Microthrixaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Bartonella sp. AP6QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Mesosutterella multiformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Rubrivirga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Thermoleophilaceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_submitter: Aalborg University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang university


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: Russia: Baikal Lake region; Siberia

ncbi_isolation_source: root nodule

ncbi_organism_name: Bosea sp. Tri-39

ncbi_submitter: ARRIAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. Tri-39


ncbi_country: Pacific Ocean

ncbi_organism_name: Christiangramia echinicola DSM 19838

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Christiangramia;s__Christiangramia echinicola;x__Christiangramia echinicola DSM 19838


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: Kenya: Laikipia ranch

ncbi_isolation_source: mastitis-infection

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Kenya Agricultural and Livestock Research Organisation


ncbi_country: USA

ncbi_organism_name: Bordetella holmesii H620

ncbi_submitter: JCVI


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Burkina Faso: Cascades; Karfiguela

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Ireland: Dublin

ncbi_isolation_source: Corneal scraping

ncbi_organism_name: Moraxella nonliquefaciens

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_country: China: Henan

ncbi_isolation_source: cooked food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: kyungpook national university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: CRC RESIST


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: unknown

ncbi_organism_name: Muribaculum intestinale


ncbi_country: Australia

ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Japan

ncbi_organism_name: Nocardia vermiculata

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Tuebingen University


ncbi_country: Philippines

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_country: USA: Rochester

ncbi_isolation_source: sap

ncbi_organism_name: Sphingomonas phyllosphaerae

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Georgia

ncbi_organism_name: Pseudomonas capsici

ncbi_submitter: University of Georgia


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Halopseudomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 516

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Ruminococcus sp.


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Parma


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China: Xinjiang Province

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Granulosicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Florida; West Florida Shelf

ncbi_isolate: CCFWC 502

ncbi_isolation_source: coastal water

ncbi_organism_name: Synechococcus sp. CCFWC 502

ncbi_strain_identifiers: CCFWC 502

ncbi_submitter: Old Dominion University, Greene Lab


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_submitter: National University of Singapore and Genome Institute of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Singapore


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Paraglaciecola chathamensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Faecivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;x__unclassified Candidatus Faecivicinus;s__Candidatus Faecivicinus sp.


ncbi_organism_name: Pseudomonas sp. zbq_5

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_organism_name: Rhizobium brockwellii

ncbi_submitter: The University of Sheffield


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22927;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Klebsiella pneumoniae BIDMC 47

ncbi_strain_identifiers: BIDMC 47

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 47


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 47b

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_organism_name: Lentzea kristufekii

ncbi_submitter: Biology Center, CAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Brazil

ncbi_isolation_source: biological fluid or tissue

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: faeces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Ligilactobacillus murinus


ncbi_submitter: China Aricultural University


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-572

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Wits University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_country: Argentina

ncbi_organism_name: Candidatus Phytoplasma pruni

ncbi_strain_identifiers: ChTDIII

ncbi_submitter: University of Hohenheim

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIII (X-disease group);s__Candidatus Phytoplasma pruni


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Nanjing University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Nevskiales bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Australia: Victoria

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Federation University Australia


ncbi_organism_name: Streptomyces sp. bgisy031

ncbi_submitter: BGI Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: CREA-Research Centre for Aquaculture and Animal Production


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans NLML4

ncbi_submitter: Cornell University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: China: Hangzhou

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: Ethiopia

ncbi_isolation_source: Human sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: University of East Anglia


ncbi_organism_name: Xanthomonas albilineans

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. AM10-11

ncbi_submitter: BGI


ncbi_organism_name: Faecalibacillus intestinalis


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_organism_name: Microcoleus sp. AT13-A6

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium CG1_02_43_90


ncbi_organism_name: Niallia sp. FSL R7-0648

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Niallia;x__unclassified Niallia;s__Niallia sp. FSL R7-0648


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Madurai Kamaraj University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University College Cork


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Brazil: Continental slope off northeastern Brazil; 170 km from the coastline and 280 km to the north of the mouth of the Parnaiba River

ncbi_isolation_source: Sediment core

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: UFRJ


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Empedobacter sp. UBA5039

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_assembly_name: Rumen uncultured genome RUG532

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Curtobacterium sp. PhB25

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Pittsburgh


ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Metabacillus sp. 22489

ncbi_submitter: Yantai University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC047917


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Science


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-30

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_strain_identifiers: new MAG-30

ncbi_submitter: Micoorganism


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Ningbo

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Fish farm

ncbi_organism_name: Candidatus Ichthyocystis hellenicum

ncbi_submitter: Functional Genomics Genter Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Candidatus Ichthyocystis;s__Candidatus Ichthyocystis hellenicum


ncbi_country: USA

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_isolation_source: isolated from nymph of Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: USA: Massachusetts; Boston

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides congonensis


ncbi_organism_name: Nesterenkonia xinjiangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Vancouver

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of British Columbia


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Czech Republic

ncbi_isolation_source: probiotic product

ncbi_submitter: Masaryk University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: IMG-taxon 2684622997 annotated assembly

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Nigeria: Abeokuta North

ncbi_isolation_source: Poultry feed

ncbi_submitter: RIVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Abeokuta


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_isolation_source: BLOOD


ncbi_organism_name: Bacillus atrophaeus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_country: Spain: Asturias

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Blautia producta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_submitter: Drexel


ncbi_organism_name: Roseibacillus persicicus

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Broad Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Soil

ncbi_submitter: HUAZHONG AGRICULTURAL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki;x__Bacillus thuringiensis serovar kurstaki str. HD-1


ncbi_organism_name: Coprobacillaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: FL

ncbi_isolation_source: Calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: South Korea: Cheongju

ncbi_isolation_source: food

ncbi_submitter: Sanigen


ncbi_organism_name: Silvimonas terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Marinilabiliaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: wound

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA5898

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5898


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: Arcobacteraceae bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; Massachusetts

ncbi_isolation_source: OP Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Allokutzneria oryzae

ncbi_strain_identifiers: TBRC 7907

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Caecum


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Parvularcula sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: fermenting Elaeis palm sap

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Zymomonadaceae;g__Zymomonas;s__Zymomonas mobilis;sb__Zymomonas mobilis subsp. mobilis;x__Zymomonas mobilis subsp. mobilis ATCC 29191


ncbi_isolation_source: honeybee gut

ncbi_organism_name: Lactobacillus huangpiensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 418

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides sp. AF21-43

ncbi_submitter: BGI


ncbi_country: China: Beijing

ncbi_organism_name: Segatella copri

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Agromyces mediolanus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Atribacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Alberta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Alberta


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Actinobacteria bacterium UBA3028

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Mill Valley; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Vibrio satsumensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Corynebacterium striatum


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces avidinii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_submitter: University of Southern California


ncbi_organism_name: [Clostridium] leptum


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources