ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


gtdb_representative: t

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter asburiae

ncbi_strain_identifiers: Gar NS 19

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Hoeflea sp.

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFOXYC2_FULL_43_9


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina: Laguna Socompa; Salta

ncbi_isolation_source: soil surrounding the lake

ncbi_organism_name: Nesterenkonia sp. Act20

ncbi_submitter: Centro de Investigaciones y Servicios en Microscopia Electronica


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Ibiuna

ncbi_isolation_source: Spinach

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Osedax symbiont Rs2

ncbi_submitter: Korea University


ncbi_country: Russia: Moscow region

ncbi_isolation_source: plant

ncbi_organism_name: Clavibacter phaseoli

ncbi_strain_identifiers: VKM Ac-2921

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_organism_name: Candidatus Kaftiobacterium secundum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus formosus

ncbi_strain_identifiers: NRRL NRS-863

ncbi_submitter: NCAUR-ARS-USDA

ncbi_type_material_designation: assembly from type material


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_strain_identifiers: DS

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Xiamen University


ncbi_country: Brazil

ncbi_isolation_source: polluted water

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_country: USA: New York ex Aruba

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: LR CGMCC No.11154

ncbi_submitter: Guangdong academy of agricultural sciences


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan: Tokyo Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Northwestern University


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: university of alicante


ncbi_country: South Korea: Osong

ncbi_isolation_source: Patient with Meliodosis

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control and Prevention


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 115 (4-4465989)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 115 (4-4465989)


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock biobioreactor

ncbi_organism_name: Bacteroidia bacterium 43-41

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium 43-41


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: UIUC


ncbi_submitter: EMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Sporolactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Roseobacter sp. HKCCA0882

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Kauai Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: KIDO

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: United Kingdom:Wales

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: body fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_organism_name: Acidovorax soli

ncbi_submitter: department of plant and microbial biology


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample from feedlot cattle

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: European foulbrood infected honey bee larva

ncbi_organism_name: Fructobacillus sp. EFB-N1

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Raoultella sp. 18104

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Moraxella nonliquefaciens

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Flagellimonas amphidinii

ncbi_submitter: Shantou University


ncbi_organism_name: Faecalibacillus intestinalis


ncbi_organism_name: Nereida ignava

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Hydrogenothermaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter chinensis

ncbi_refseq_category: reference genome

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Hong Kong: Mount Nicholson

ncbi_isolation_source: Garden soil

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Germany

ncbi_isolation_source: Urine/ Catheter urine

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_assembly_level: Chromosome

ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0412

ncbi_submitter: Texas A&M University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sinorhizobium meliloti

ncbi_strain_identifiers: USDA 1002

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Komagataeibacter oboediens 174Bp2

ncbi_submitter: Vital-IT - Swiss Institute of Bioinformatics


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Fujian Agriculture and Forestry Universit


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: United Kingdom: Worcester

ncbi_organism_name: Campylobacter jejuni subsp. jejuni


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Aerococcus loyolae

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: porc saussage

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Livingstone


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Ensifer sp. ENS02

ncbi_submitter: University of Chicago


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: phlegm

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: Rumen uncultured genome RUG11300

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Corynebacterium glaucum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Venezuela

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Pseudomonas vranovensis

ncbi_submitter: College of Resources and Environmental science


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-1069

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: United Kingdom: Isle of May

ncbi_isolation_source: Halichoerus grypus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 3898

ncbi_submitter: Ghent University


ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Mato Grosso

ncbi_isolation_source: Pantanal

ncbi_organism_name: Pseudomonas sp. 382

ncbi_submitter: Universidade Federal de Mato Grosso


ncbi_country: France: Dune Dewulf; Ghyvelde

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella nectarea subsp. apis

ncbi_submitter: Complutense University of Madrid


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Cyanobacteria bacterium HKST-UBA04

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium HKST-UBA04


ncbi_country: Ireland

ncbi_isolation_source: Dairy

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: BGI


ncbi_organism_name: Bosea sp. MMO-172

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. MMO-172


ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: International Space Station

ncbi_isolation_source: Nomex 6

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-

ncbi_submitter: Texas A&M University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Streptomyces spectabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan:Hyougo; Himeji-city; National Hospital Organization Himeji Medical Center

ncbi_isolation_source: pus

ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Sunstar Inc.


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: ERAMIC ERA TECHNOLOGY JOINT STOCK COMPANY


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces niveus

ncbi_strain_identifiers: NRRL 2466

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: SC


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled cattle faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Texas

ncbi_isolation_source: Granular activated carbon

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptomyces sp. NPDC056431

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Michigan


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacterium sp.


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces asoensis


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: MPI for marine Microbiology


ncbi_organism_name: Ruminococcoides intestinale

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Spain: Galicia

ncbi_organism_name: Psychrobacter sp. C 20.9

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: Egypt: Gharbia; El Santa

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella pasteurii

ncbi_strain_identifiers: FR 52

ncbi_submitter: msa univeristy


ncbi_isolation_source: Invasive

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M46066

ncbi_submitter: Broad Institute


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Pseudomonas sp. P8_229

ncbi_submitter: Technical university of Denmark


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-670-L08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: resistant mutant resulting from strain LAC passaged in increasing concentrations against the synthetic polyamine AHA-1394

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Liptonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Liptoniibacteriota;x__unclassified Candidatus Liptonbacteria;s__Candidatus Liptonbacteria bacterium


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Lebanese American University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0246


ncbi_organism_name: Pigeon pea little leaf phytoplasma

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__unclassified Candidatus Phytoplasma;s__Pigeon pea little leaf phytoplasma


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Rhizobium sp. CFBP 13726

ncbi_submitter: INRAE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Arctic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. K222D

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Paris

ncbi_isolation_source: from a rotten apple

ncbi_organism_name: Chryseobacterium nematophagum

ncbi_submitter: University of Glasgow


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bradyrhizobium sp. LA6.12

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: hospital

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: University of Pittsburgh


ncbi_strain_identifiers: B137;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2932

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Fujian Normal University


ncbi_country: South Korea: Wanju-gun

ncbi_isolation_source: feces

ncbi_organism_name: Cellulosilyticum sp. WCF-2

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Viet Nam: Dak Lak

ncbi_isolation_source: soil near root of coffee

ncbi_organism_name: Streptomyces sp. CBG31

ncbi_submitter: institute of biotechnology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh: Hajiganj

ncbi_isolation_source: drinking water

ncbi_organism_name: Escherichia coli

ncbi_submitter: icddr,b


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces sp. NPDC026206

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: The Roslin Institute, University of Edinburgh


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: Canada: British Columbia;Abbotsford

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Mycolicibacterium anyangense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Corynebacterium sp. 70RC1

ncbi_submitter: Wageningen University and Research


ncbi_assembly_name: freshwater MAG --- MJ110830B_bin-123

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12243

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Italy: Florence

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Canada: Ontario

ncbi_isolation_source: Environment - Water-River

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20095309


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


gtdb_type_species_of_genus: t

ncbi_organism_name: Murinocardiopsis flavida

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Sylt

ncbi_organism_name: Vibrio crassostreae


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Ngtc NS 3

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Faculty of Veterinary Medicine, Ankara University (FVMAU)


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella sp. DNF00663

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ensifer sp.

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiangxi; Gaoan

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: GA

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_country: USA: South Carolina

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto de Higiene


ncbi_isolation_source: rumen

ncbi_organism_name: Selenomonadaceae bacterium UBA2829

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0891

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: Herd 201

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 791

ncbi_submitter: University of Calgary


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_isolation_source: forest soil

ncbi_organism_name: Microbacteriaceae bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_country: China: South China Sea

ncbi_isolation_source: marine sediments

ncbi_organism_name: Marinobacter fonticola

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Raw beef

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: USA: Arizona

ncbi_isolation_source: Flea captured from prairie dog burrow showing signs of recent die-off

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Pacific Northwest National Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Streptococcus mitis


ncbi_country: Australia

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: Rwanda: Ngoma

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: University of Rwanda


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Streptomyces sp. 351MFTsu5.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oribacterium parvum

ncbi_submitter: EMG


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: John Innes Centre


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Norway: Oslo

ncbi_isolation_source: Pig-tail catheter

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Spain: Velez at Torredelmar

ncbi_isolation_source: river mouth

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: KRIBB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Johannes Gutenberg-University


ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: Masaryk University


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1812

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_country: Japan: Chiba

ncbi_isolation_source: Hairy root tissue

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_assembly_name: freshwater MAG --- Loclat_bin-04081

ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Holosporales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Montreal


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine

ncbi_organism_name: Thalassospira lucentensis

ncbi_submitter: University of Queensland


ncbi_country: Algeria

ncbi_organism_name: Bradyrhizobium sp. CSA112

ncbi_submitter: university of Abderrahmane Mira


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Baltimore

ncbi_isolation_source: hospital; patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Maroochydoore River

ncbi_organism_name: Proteobacteria bacterium UBA6900

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA6900


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bacteroides togonis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_country: Denmark: Frederiksberg

ncbi_isolation_source: Synovial fluid

ncbi_organism_name: Elizabethkingia sp. HvH-WGS333

ncbi_submitter: Department of Clinical Microbiology, Copenhagen University Hospital Hvidovre, Denmark


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Belgium

ncbi_isolation_source: grass samples

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: KM

ncbi_submitter: National Institutes for Food and Drug Control


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Antarctica: James Ross Island near Lachman Lake

ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Rufibacter ruber

ncbi_submitter: Masaryk University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 68

ncbi_submitter: SC


ncbi_organism_name: Psychrobacter sanguinis


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium UBA4698


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: China

ncbi_organism_name: Mycobacterium marseillense

ncbi_submitter: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Clostridium sp. UBA2485

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces werraensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin23

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: GDC bin23

ncbi_submitter: Monash University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at San Antonio


ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Fujian Province

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: St. Louis

ncbi_organism_name: Ectopseudomonas mendocina ZWU0006

ncbi_submitter: University of Oregon


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_strain_identifiers: P13 C A7

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_submitter: China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: Abortion

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 03T12

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Denmark: Aarhus University

ncbi_isolate: EaCA-K

ncbi_isolation_source: cocoon mucus of kanamycin treated earthworm

ncbi_organism_name: Candidatus Lumbricidiphila eiseniae

ncbi_strain_identifiers: EaCA-K

ncbi_submitter: Aarhus University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow region

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Paramagnetospirillum kuznetsovii

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Dialister sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Finniella inopinata

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_organism_name: Acinetobacter modestus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China

ncbi_organism_name: Shigella flexneri Shi06HN159

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Bacillus daqingensis

ncbi_submitter: Universidad Autonoma de Chile Sede Talca


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Serratia marcescens


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 228

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou university


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Halothece sp. Uz-M2-17

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Allgaiera indica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: skin of fish with ulcerative dermatitis

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2622736528 annotated assembly

ncbi_organism_name: Cellulophaga baltica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02438

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Kosakonia quasisacchari

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Human (gut)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010137


ncbi_organism_name: Collimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodopseudomonas pentothenatexigens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Lund University


ncbi_assembly_name: Rumen uncultured genome RUG775

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M065S2

ncbi_submitter: Universite de Montreal


ncbi_country: China: Qinghua

ncbi_isolation_source: crude oil

ncbi_organism_name: Deferribacteraceae bacterium UBA1873

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Leptofilum sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptofilum;x__unclassified Candidatus Leptofilum;s__Candidatus Leptofilum sp.


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Caecibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus entomosocium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Phaeobacter sp. SYSU ZJ3003

ncbi_strain_identifiers: SYSU ZJ3003

ncbi_submitter: Guangdong Ocean University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Chelatococcus sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: raw pistachio

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_isolation_source: shower drain

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: Max von Pettenkofer-Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. palearctica;x__Yersinia enterocolitica subsp. palearctica 556/8265


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B11D3B

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus sp. CCUG 66565

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Australia: Sooley Dam

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-563/04

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: IMG-taxon 2667527394 annotated assembly

ncbi_organism_name: Mycetocola miduiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Slovakia: mine in Hodrusa-Hamre

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Pavol Jozef Safarik University in Kosice


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India:Tamilnadu; Coimbatore

ncbi_isolation_source: Soybean

ncbi_organism_name: Flavobacterium glycines

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA:New York; Morrisania

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfovibrio sp. UBA6079

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter quasihormaechei

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_isolation_source: water

ncbi_organism_name: Alicyclobacillus mengziensis

ncbi_submitter: Institute of Microbiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_12_FULL_44_42


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: food

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Northeastern University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudogemmobacter blasticus

ncbi_submitter: NEB


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Rectinema sp.


ncbi_organism_name: Clostridioides difficile F314

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bielefeld, Germany


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_organism_name: Enterococcus faecalis 20.SD.W.06

ncbi_submitter: The Genome Institute


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea

ncbi_isolation_source: Beach sand

ncbi_organism_name: Marinobacter salinisoli

ncbi_submitter: Korea University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Amycolatopsis mediterranei U32

ncbi_submitter: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Konstanz


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D6_bin-277

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerovibrio sp. RM50

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mexico: Baja California

ncbi_isolation_source: Hotspring

ncbi_organism_name: Herpetosiphon geysericola

ncbi_submitter: California Institute of Technology


ncbi_country: Brazil

ncbi_isolation_source: Fecal Swab

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Hawaii

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Italy

ncbi_organism_name: Chryseobacterium sp. AG363


ncbi_country: United Kingdom:London

ncbi_isolation_source: Appendix abscess

ncbi_organism_name: Bacteroides fragilis

ncbi_strain_identifiers: CCUG 4856

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Guariba

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Haemophilus influenzae biotype aegyptius

ncbi_submitter: Griffith University


ncbi_organism_name: uncultured Bryocella sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Ottawa

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: University of Ottawa


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Escherichia coli KTE21

ncbi_submitter: Broad Institute


ncbi_country: USA: Maryland

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Caballeronia sp. LP006

ncbi_submitter: University of Texas at Arlington


ncbi_country: China

ncbi_organism_name: Chryseobacterium sp. C1

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1383 from squamous cell carcinomas patient MST003

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Queensland


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR33

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Pectobacterium cacticida

ncbi_submitter: University of Gdansk


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: metagenome

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microcystis wesenbergii

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_isolation_source: Edible insect Zophobas atratus (Pet Feed Store)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine Cath

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Alcanivorax nanhaiticus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7100-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Salmonella sp. NW9

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Micropelagius thuwalensis

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;g__Candidatus Micropelagius;s__Candidatus Micropelagius thuwalensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Sorangium sp. So ce1078

ncbi_strain_identifiers: So ce1078

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1078


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Ghent University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC057062

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Boseongicola sp.

ncbi_submitter: Monash University


ncbi_isolation_source: honeybee gut

ncbi_organism_name: Apilactobacillus xinyiensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Russia: Northern Caucasus

ncbi_organism_name: Sphaerotilus sulfidivorans

ncbi_submitter: NEB


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. P6-2-1

ncbi_submitter: Shanxi Agricultural University


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Gluconacetobacter sp.

ncbi_submitter: Teagasc


ncbi_country: Pakistan

ncbi_isolation_source: midrib of citrus leaves

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: Southwest University


ncbi_country: Paraguay

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Auckland


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Pig carcasses

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kyung Hee University


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: India: Assam

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: South Africa

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-430-F16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-1240

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Egypt: Alexandria

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: chicken breast meat

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: France: Lille

ncbi_isolation_source: bronchial

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG13604

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: INTA Bariloche - CONICET


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Dolosicoccus sp.


ncbi_assembly_name: IMG-taxon 2675903139 annotated assembly

ncbi_organism_name: Streptomyces harbinensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. F6142

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. F6142


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestinal content

ncbi_submitter: ChinaCDC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: MI

ncbi_organism_name: Rhodococcus sp. 06-469-3-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 06-469-3-2


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Seattle

ncbi_isolation_source: Cystic fibrosis paediatric patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: Campylobacter jejuni CVM 41908 v1.0

ncbi_organism_name: Campylobacter jejuni CVM 41908

ncbi_submitter: FDA/CVM


ncbi_organism_name: Thermus sp.

ncbi_submitter: Saraswanti Genomics Institute


ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: OsloMet


ncbi_strain_identifiers: KTS.20.021 TP.THY

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: microalga culture

ncbi_organism_name: Mucilaginibacter inviolabilis

ncbi_submitter: KIRBB


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_assembly_name: IMG-taxon 2599185316 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC52

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Variovorax sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Limosilactobacillus oris F0423

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella sp. A7

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Candidatus Merdousia gallistercoris

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Tenacibaculum sp.


ncbi_isolation_source: unknown

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Campylobacter coli

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter sp. 25977_6

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 25977_6


ncbi_organism_name: Mesorhizobium sp. LSHC412B00

ncbi_submitter: University of Southern California


ncbi_country: Canada: Alberta

ncbi_organism_name: Campylobacter canadensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: New Hampshire; Odiorne Point State Park

ncbi_isolation_source: foot of periwinkle

ncbi_organism_name: Pseudoalteromonas sp. NEC-BIFX-2020_015

ncbi_submitter: New England College


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP021017.1

ncbi_submitter: IGS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xihua University


ncbi_country: China

ncbi_isolation_source: sludge from anaerobic membrane bioreactor

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: Shantou University, China


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Amycolatopsis thailandensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University