ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterobacter soli

ncbi_submitter: The Ohio State University


ncbi_country: China

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Scaffold

ncbi_country: France: Paris

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: Mozambique

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


gtdb_representative: t

ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Morocco: desert

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: NCAUR-ARS-USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolate: MYXO

ncbi_organism_name: Myxococcaceae bacterium

ncbi_strain_identifiers: MYXO

ncbi_submitter: Heleen Ouboter


ncbi_isolation_source: skin haddock

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2615840607 annotated assembly

ncbi_organism_name: Snodgrassella sp. R-53583

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter towneri;x__Acinetobacter towneri DSM 14962 = CIP 107472


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Azorhizobium sp. AG788

ncbi_submitter: Biology Centre CAS


ncbi_assembly_level: Complete Genome

ncbi_country: Spain: Portman bay; Murcia

ncbi_isolation_source: flotation deposits | sea sand

ncbi_organism_name: Alicyclobacillus sp. SO9

ncbi_submitter: Technische Universitaet Bergakademie Freiberg


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ectopseudomonas hydrolytica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinoplanes octamycinicus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH01018

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_organism_name: Fimbriimonadaceae bacterium


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Japan: Lake Tomaco

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: Fermented sourdough

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDH8C110P-1


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Croatia: Dubrovnik

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AIT Austrian Institute of Technology


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: silkworm excrement

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Sericulture and Agri-Food Research Institute


ncbi_country: Australia: Victoria; Jam Jeerup

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Federation University Australia


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of Oklahoma


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Peptococcaceae bacterium UBA4997

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Denmark: Odense

ncbi_isolation_source: nose swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_country: Germany: somewhere in SN

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Yunnan Province

ncbi_isolation_source: alkaline soil

ncbi_organism_name: Prauserella flavalba

ncbi_refseq_category: reference genome

ncbi_submitter: Bielefeld University


ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: LABEO


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: China: Ganyu Qu; Jiangsu Province

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: Ningbo University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nostoc sp. ChiVER01

ncbi_submitter: LANGEBIO


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Xiamen University


ncbi_country: China: GanSu

ncbi_isolation_source: diseased yak

ncbi_organism_name: Brucella suis bv. 1

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 1


ncbi_country: India

ncbi_isolation_source: rhizosphere sample from Melaleuca citrina

ncbi_organism_name: Saccharopolyspora indica

ncbi_submitter: Kasetsart University


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: air

ncbi_organism_name: Sphingomonas sp. Leaf4

ncbi_submitter: ETH ZURICH


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pantanalinema sp. GBBB05

ncbi_submitter: Instituto de Quimica


ncbi_country: China

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacillus cereus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Ocean University of China


ncbi_organism_name: Cellulophaga fucicola


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Cellvibrio fontiphilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Salmonella sp. C3274

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_isolate: Rhizobiales sp. RBC065

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_strain_identifiers: Rhizobiales sp. RBC065

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Ireland: Clew Bay

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Cefas


ncbi_organism_name: Enterococcus sp. HMSC072H05

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Washington


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_organism_name: Nitrospirota bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Vulcan; Alberta

ncbi_isolation_source: feeder bull lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: USA: San Diego

ncbi_isolation_source: lagoon

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Bellevue University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0143

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_country: France

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_assembly_level: Chromosome

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_assembly_name: Rumen uncultured genome RUG13837

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Sciensano


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: MD

ncbi_isolation_source: Paprika

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Cologne

ncbi_organism_name: Escherichia coli O104:H4 str. 01-09591

ncbi_submitter: Life Technologies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 01-09591


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Liaoning province

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Rumen uncultured genome RUG13845

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: Spain: Gran Canaria

ncbi_isolation_source: cutaneous biopsy

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomonospora nanhaiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: University of Waterloo


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine sediment

ncbi_organism_name: Christiangramia lutea

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Sao Pablo

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Microbacterium sp. UMB0228

ncbi_submitter: Loyola University Chicago


ncbi_country: Brazil

ncbi_isolation_source: blackwater river

ncbi_organism_name: Serratia nevei

ncbi_submitter: Universidade Federal do Amazonas


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. LAM2023

ncbi_submitter: Chinese academy of agricultural sciences


ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Durham; NC

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Austria

ncbi_isolation_source: raw milk

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-0542

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Denmark

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Copenhagen


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Enterobacter kobei

ncbi_strain_identifiers: 67f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacillus pretiosus

ncbi_strain_identifiers: TIAC 2686

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Sichuan University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: bacterium UBA4901

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_country: Australia: Queensland

ncbi_isolation_source: Infected foot

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Caproicibacter sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3002

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira sp. UBA4513


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: EMG


ncbi_country: Spain: Marquesado

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter ibericus

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Merdimmobilis sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: India: Madras

ncbi_isolation_source: maize

ncbi_organism_name: Pantoea stewartii

ncbi_submitter: University of Regina


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_assembly_name: freshwater MAG --- MJ-2014-D5_bin-060


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Colon

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 1-5 micron

ncbi_organism_name: Vibrio sp. F13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Flavobacterium pectinovorum

ncbi_submitter: Universite Laval


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoides mccartyi CG1

ncbi_submitter: GIS/NUS


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC090119

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: soft tissue (axilla)

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Egypt: Mediterranean Sea

ncbi_organism_name: Idiomarina sp. 017G

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Sphaerospermopsis kisseleviana

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Lebanon

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Lebanese American University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China Agricultural University


ncbi_country: Greece

ncbi_submitter: Entasis Therapeutics


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Candidatus Aalborgicola lynettensis

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: Rice fields

ncbi_organism_name: Xanthomonas oryzae

ncbi_submitter: Colorado State University


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Oceanimonas baumannii

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Canada: Willows Beach; Victoria; BC

ncbi_isolation_source: algae surface

ncbi_organism_name: Pseudoalteromonas fuliginea

ncbi_submitter: University of Victoria


ncbi_isolation_source: cheese

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: ASCC 1263

ncbi_submitter: The University of Queensland


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Bifidobacterium sp. ESL0690

ncbi_submitter: University of Lausanne


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_organism_name: Methanobacteriaceae archaeon

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Northwestern University


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Dietzia kunjamensis subsp. schimae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1332

ncbi_submitter: Broad Institute


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas sp. NPDC087039

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. SAL4449

ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_isolate: SPRUCE 613

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_strain_identifiers: SPRUCE 613

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: Weifang People's Hospital


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Rickettsiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Halieaceae bacterium WSDMB12

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Quadram Institutte


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Sunchang

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Helicobacter pylori SA162C

ncbi_submitter: MHH


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Turicimonas muris


ncbi_country: France: Paris

ncbi_isolation_source: midstream urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Institute of Biology, Vietnam Academy of Science and Technology (VAST), Hanoi, Vietnam


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_submitter: WRAIR-Africa


ncbi_country: South Africa: North-West Province

ncbi_isolation_source: river water

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: North-West University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Riemerella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14890

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Candidatus Campbellbacteria bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;x__unclassified Candidatus Campbellbacteria;s__Candidatus Campbellbacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Klebsiella sp. RHBSTW-00465

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Robertmurraya mangrovi

ncbi_submitter: Anhui University of Chinese Medicine


ncbi_organism_name: Acinetobacter sp. KAM398

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: China: Shenyang; Liaohe

ncbi_isolation_source: oil reservoir

ncbi_organism_name: Bacillus sp. XT-2

ncbi_submitter: Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. XT-2


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas sp. NFX183

ncbi_submitter: iBET


ncbi_organism_name: Escherichia coli

ncbi_submitter: Aarhus University


ncbi_organism_name: Flavobacterium sp. T-16

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Banpo; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Russia: Altai region

ncbi_isolation_source: root nodule

ncbi_organism_name: Phyllobacterium zundukense

ncbi_submitter: ARRIAM


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Broad Institute


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: EMG


ncbi_country: Somalia

ncbi_organism_name: Shigella sonnei

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: CA

ncbi_isolation_source: Raw Milk

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: MRSN BI Team


ncbi_country: Chile


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Italy: Sardinia; Luras

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Serbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: upper soil

ncbi_organism_name: Polyangium aurulentum

ncbi_submitter: Shandong University


ncbi_country: South Korea

ncbi_isolation_source: nut

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: feline cat lung

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Streptomyces sp. NPDC010273

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas citri pv. bilvae

ncbi_strain_identifiers: NCPPB 3213

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. bilvae


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus aureus


ncbi_country: Iran: East Azerbaijan

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas azerbaijanorientalis

ncbi_submitter: KU Leuven


ncbi_submitter: Carleton Univeristy


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptomyces sp. C10

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__environmental samples;s__uncultured Candidatus Saccharimonadales bacterium


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0786

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gordonia sp. FQ

ncbi_strain_identifiers: FQ

ncbi_submitter: The third institute of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. FQ


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Chlamydiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: Washington; Puget Sound

ncbi_isolation_source: Pacific oyster adult

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Oregon State University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Samara

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_assembly_name: Rumen uncultured genome RUG10358

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF6747

ncbi_submitter: Nofima


ncbi_country: Peru


ncbi_isolation_source: Colon


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Brazil: Campinas; SP

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: State University of Campinas


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces


ncbi_organism_name: Klebsiella sp. 82156

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: ProBone


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Desulfobulbaceae bacterium BRH_c16a

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: Japan:Tokyo 194-8511; Machida; Minamiooya 11; Mitsubishi Kasei Institute of Life Sciences

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: China: Jiangsu

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: International Space Station

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ethiopia

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Australia

ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: Black sand from seashore of Jeju Island

ncbi_organism_name: Joostella atrarenae

ncbi_submitter: FACULTY OF SCIENCE, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: adult intestinal biopsy

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: China

ncbi_isolate: Shanghai

ncbi_isolation_source: local geographic source

ncbi_organism_name: Streptomyces coeruleorubidus

ncbi_strain_identifiers: Shanghai;DM

ncbi_submitter: Nanjing University of Chinese Medcine


ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: University of Pernambuco (UPE)


ncbi_country: Denmark

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1897R

ncbi_submitter: Broad Institute


ncbi_country: China: Qinghai Province

ncbi_organism_name: Bacillus sp. D12

ncbi_submitter: China CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. D12


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SRCAMB


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Acinetobacter sp. FDAARGOS_495

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_country: USA

ncbi_organism_name: Neisseria meningitidis FAM18

ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;s__Neisseria meningitidis;x__Neisseria meningitidis serogroup C;x__Neisseria meningitidis FAM18


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Zhejiang

ncbi_isolation_source: Meat product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1816

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides eggerthii CAG:109

ncbi_submitter: DTU


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio tarriae

ncbi_submitter: CDC


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Haukeland University Hospital


ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. suis;x__Bifidobacterium longum subsp. suis DSM 20211


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: Sargassum hemiphyllum ecosystem seawater sample

ncbi_organism_name: Rhodobacterales bacterium HKCCA1058

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW531-T4

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University


ncbi_country: Mexico: Veracruz Veracruz

ncbi_isolation_source: infected blood

ncbi_organism_name: Anaplasma marginale

ncbi_submitter: INIFAP


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_organism_name: Bermanella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Providencia xihuensis

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_organism_name: Kribbellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Micromonospora sp. URMC 105

ncbi_strain_identifiers: URMC 105

ncbi_submitter: University of Rochester


ncbi_organism_name: Suilimivivens sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Semmelweis University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Paracoccus sp. P2

ncbi_submitter: Henan university of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. P2


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces sp. NPDC015346

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Bacillus cereus group sp. Bce009

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce009


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Nitratidesulfovibrio vulgaris

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: New Zealand

ncbi_isolation_source: vacuum-packed lamb

ncbi_organism_name: Lacrimispora algidixylanolytica

ncbi_submitter: Institute Pasteur


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Ottawa


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus koreensis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: marine college, shandong university


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 460

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: New Jersey; Cheesequake Salt Marsh

ncbi_isolation_source: channel water

ncbi_organism_name: Prodigiosinella confusarubida

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3265

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: New York

ncbi_isolation_source: potable water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella sp. NW146

ncbi_submitter: Sichuan University


ncbi_country: Costa Rica

ncbi_isolate: Edef

ncbi_organism_name: Pantoea sp. Edef

ncbi_strain_identifiers: Edef

ncbi_submitter: Ohio State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: bentonite formations

ncbi_organism_name: Stenotrophomonas bentonitica

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Thailand

ncbi_isolation_source: the shrimp farm in eastern Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil:Minas Gerais; Uberlandia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: LNCC


ncbi_isolation_source: skin of face; 6 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Bacillus cereus

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Panama: Frijoles Peninsula

ncbi_isolation_source: exoskeleton of ant

ncbi_organism_name: Pseudonocardia sp. EC080625-04

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus parauberis NCFD 2020

ncbi_strain_identifiers: NCFD 2020

ncbi_submitter: JCVI


ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA:Alaska; North Slope; Kuparuk formation

ncbi_isolation_source: oil reservoir sample K2

ncbi_organism_name: bacterium 42_11

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: Japan: Ibaraki; Tsukuba

ncbi_isolation_source: Laboratory activated sludge

ncbi_organism_name: Nitrosomonas sp. GH22

ncbi_submitter: Miami University


ncbi_organism_name: Marivita sp. S0852

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: Salmonella enterica CVM N51278 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_assembly_name: Campylobacter coli CVM 41932 v1.0

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli CVM 41932

ncbi_submitter: FDA/CVM


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Food production environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_organism_name: Sutcliffiella tianshenii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Actimicrobium sp. CCC2.4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Flavobacterium anhuiense

ncbi_submitter: Guangxi University


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Thiobacillus sp. 65-29

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: Streptococcus agalactiae GB00640

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_country: Italy

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Jb

ncbi_submitter: University of Lausanne


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalicatena sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2595698215 annotated assembly

ncbi_organism_name: Curtobacterium sp. UNCCL20

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Rhodococcus rhodochrous

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_organism_name: Streptomyces sp. NPDC002779

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Dysosmobacter sp.


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: McGill University


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_organism_name: Deinococcota bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: India: Vellore

ncbi_organism_name: Shigella sp. FC2383

ncbi_submitter: Christian Medical College


ncbi_country: Brazil: Dourados


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: India: Koyyagarupadu; Krishna; Telangana

ncbi_isolation_source: root

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: IUNFC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_coassembly_bwa.562 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.562 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Germany

ncbi_isolation_source: Skin swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Algeria: Oran

ncbi_isolation_source: root nodules

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Universite de Poitiers ecologie et Biologie des Interactions, UMR CNRS 7267


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Piura


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Methylomicrobium sp. wino1

ncbi_submitter: Jeju National University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Xanthobacter flavus

ncbi_strain_identifiers: DSM 338

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Photorhabdus sp. S5P8-50

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Corynebacterium glucuronolyticum DSM 44120


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: France: Dijon

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Colimorpha enterica

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Colimorpha;s__Candidatus Colimorpha enterica


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: USA

ncbi_isolation_source: soybeans

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Rothia mucilaginosa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Kitasatospora sp. NPDC028055

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_isolation_source: Citrus rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jiangxi Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_submitter: Northeast Forestry University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Freising

ncbi_isolation_source: modified-atmosphere packaged minced beef

ncbi_organism_name: Pseudomonas sp. TMW22089

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Klebsiella pneumoniae BIDMC 42a

ncbi_strain_identifiers: BIDMC 42a

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 42a


ncbi_organism_name: Yersinia pestis CMCC84033

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8733

ncbi_submitter: Chinese University of Hong Kong


ncbi_assembly_name: freshwater MAG --- YR4_bin-1107

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 186

ncbi_submitter: Ghent University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: Colombia: Antioquia; Rionegro

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antioquia


ncbi_submitter: Aarhus University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: bovine feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: USA: Bodega Bay; California

ncbi_isolation_source: Seagrass leaf

ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: UC Davis


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University at Buffalo


ncbi_isolation_source: Urine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Oscillatoria sp. PMC 1076.18

ncbi_submitter: National Museum of Natural History - Paris


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B192;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella veroralis;x__Prevotella veroralis DSM 19559 = JCM 6290


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Qujing Normal University


ncbi_country: Colombia: Medellin

ncbi_isolation_source: urine

ncbi_submitter: New Jersey Medical School-Rutgers University