ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Christensenella sp. UBA3929

ncbi_submitter: University of Queensland


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Caecum

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: INRA


ncbi_organism_name: Ancylobacter lacus

ncbi_refseq_category: reference genome

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Palm wine

ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: Pykyong National University


ncbi_submitter: Tokyo Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paraimprobicoccus;s__Candidatus Paraimprobicoccus trichonymphae

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: Japan

ncbi_organism_name: Helicobacter ailurogastricus

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Logan; Utah

ncbi_isolation_source: Pollen provision

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 60-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Ralstonia sp.

ncbi_submitter: Guangxi University


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Kiel University


ncbi_country: Nepal

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_12_FULL_55_13


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: Diseased vegetative millet

ncbi_organism_name: Pseudomonas syringae pv. syringae HS191

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae;x__Pseudomonas syringae pv. syringae HS191


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow spleen

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangzhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Spain: Mallorca

ncbi_isolation_source: Wastewater

ncbi_organism_name: Stutzerimonas balearica DSM 6083

ncbi_submitter: MICROGEN. Microbial Comparative Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;s__Stutzerimonas balearica;x__Stutzerimonas balearica DSM 6083


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_35_22


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Novibacillus thermophilus

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces uncialis


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. HMX87

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas sp. CJQ_7

ncbi_submitter: WenZhou Medical University


ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Aeromonas media

ncbi_submitter: Agroscope


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Salmonella sp. NW50

ncbi_submitter: Sichuan University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Boston

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-247

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_country: Finland

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_country: China: Hangzhou

ncbi_strain_identifiers: DA

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Amycolatopsis sp. NPDC005232

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: CSF


ncbi_isolation_source: honeybee gut

ncbi_organism_name: Lactobacillus helsingborgensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Xinjiang

ncbi_isolation_source: desert sand

ncbi_organism_name: Microbacterium sp. CPCC 204701

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: Spain: Asturias

ncbi_organism_name: Microlunatus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Priestia megaterium

ncbi_submitter: BGI


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Bacillus sp. FSL K6-0277

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0277


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas naejangsanensis

ncbi_submitter: University of Queensland


ncbi_country: Belgium

ncbi_organism_name: Aliarcobacter trophiarum LMG 25534

ncbi_submitter: Universitat Rovira i Virgili


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Streptomyces sp. 1114.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan

ncbi_isolation_source: trachea

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FDA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_assembly_name: Rumen uncultured genome RUG11173

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Brucella sp.


ncbi_organism_name: Streptococcus anginosus C1051

ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus anginosus;x__Streptococcus anginosus C1051


ncbi_organism_name: Paenibacillus sp. PastF-4


ncbi_country: Taiwan: Taipei

ncbi_isolation_source: mountains

ncbi_organism_name: Streptomyces spororaveus

ncbi_submitter: National Taipei University Of Technology


ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Respiratory

ncbi_organism_name: Burkholderia sp. HMSC10F09

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Cyanobacteria bacterium P01_E01_bin.42

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_E01_bin.42


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Eye discharge

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Pre-slaughter chicken

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_submitter: Monash University


ncbi_organism_name: Lonsdalea populi

ncbi_submitter: BGI


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Northern Virginia

ncbi_isolation_source: soil under pine trees; from the DSMZ collection

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: University of Minho


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: USA: New York; Westchester county

ncbi_isolation_source: skin

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: New York Medical College


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centre for Infectious Diseases and Microbiology - Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Colwellia sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_country: Spain

ncbi_isolation_source: Artificial construct derived from EPEC E2348/69 variety 2

ncbi_organism_name: Escherichia coli O127:H6

ncbi_submitter: CNB/CSIC


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_assembly_level: Chromosome

ncbi_country: France

ncbi_isolation_source: goat rumen

ncbi_organism_name: Companilactobacillus farciminis

ncbi_submitter: university of caen lower normandy


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NTT Hi-Tech Institute, Nguyen Tat Thanh University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: JAMSTEC


ncbi_country: United Kingdom: England

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_country: China: Xinjiang

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_country: Indonesia: Cenderawasih Bay National Park; Papua

ncbi_isolation_source: marine sediment

ncbi_organism_name: Algoriphagus sp. PAP.12

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_country: Russia: Kamchatka penn

ncbi_organism_name: Anoxybacillus ayderensis

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Streptomyces sp. NPDC004237

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mollicutes bacterium LVI A0078

ncbi_strain_identifiers: LVI A0078

ncbi_submitter: SUN YAT-SEN UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__unclassified Mollicutes;s__Mollicutes bacterium LVI A0078


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Leaf petiole

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: YG

ncbi_submitter: National Facility for Biopharmaceuticals


ncbi_organism_name: Defluviitoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Phycicoccus sp. Soil748

ncbi_submitter: ETH Zurich


ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 43:a:1,7


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Florida

ncbi_isolate: sk

ncbi_isolation_source: total host DNA

ncbi_organism_name: Xenorhabdus poinarii

ncbi_strain_identifiers: sk

ncbi_submitter: University of Florida


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. ECC-249

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Klebsiella sp. 3-N_Kleb.

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_submitter: Jiangnan University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: CRC AquaDiva


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Syntrophorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-a_bin-162

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas pseudonitroreducens

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Burkholderia arboris

ncbi_submitter: University of Michigan


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: Q

ncbi_isolate: Q

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Q

ncbi_submitter: DTU


ncbi_isolation_source: Clinical

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_country: India: Lonar Lake

ncbi_isolation_source: saline and alkaline soil

ncbi_organism_name: Streptomyces alkaliterrae

ncbi_submitter: Nicolaus Copernicus University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Anaerobiospirillum sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. SID7805

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: North Dakota

ncbi_organism_name: Xanthomonas translucens

ncbi_submitter: Kansas State University


ncbi_country: Italy: Ancona

ncbi_submitter: Universita Politecnica delle Marche


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. JJ1533

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1533


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: Peru

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: MPF 8

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UMC Utrecht


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Kenya

ncbi_organism_name: Porphyromonadaceae bacterium UBA5887

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: University of Cadiz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Biology Centre CAS


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0013

ncbi_submitter: Broad Institute


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Actinophytocola sp.


ncbi_country: USA: California

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: USDA


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: GC77 g1

ncbi_organism_name: Kingella denitrificans

ncbi_submitter: LSHTM


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacterium pyruvativorans

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Iowa State University


ncbi_submitter: Comenius University Science Park


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acinetobacter sp. PC34

ncbi_submitter: Southwest University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rhodanobacteraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megasphaera sp. BIOML-A2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas ulcerans

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Aliiglaciecola sp. 2_MG-2023


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_submitter: Christian Medical College


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Palmer LTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Thermohalobaculum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_genome_representation: partial

ncbi_organism_name: Pseudomonas saudimassiliensis

ncbi_submitter: URMITE


ncbi_country: China: Zhengyang

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium zhengyangense

ncbi_strain_identifiers: WYCCWR 12774

ncbi_submitter: Zhengzhou University of light industry


ncbi_country: Thailand: Trang

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: cold seep

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Thermosynechococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China:Guangdong province

ncbi_isolation_source: intestines

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Velvet assembly of Acinetobacter baumannii ABUH42783

ncbi_isolation_source: Tissues

ncbi_submitter: JCVI


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: freshwater MAG --- Loc090721-1m_bin-026

ncbi_submitter: BILS


ncbi_country: USA: DE

ncbi_isolation_source: small intestine canine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: feces

ncbi_submitter: Monash University Malaysia


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: Xinjiang Kefir

ncbi_organism_name: Bacillus cereus

ncbi_submitter: xinjiang normal university


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: CAU


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;x__unclassified Candidatus Polarisedimenticolaceae;s__Candidatus Polarisedimenticolaceae bacterium


ncbi_country: Ireland

ncbi_isolation_source: Cork

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University College Cork


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Mycoplasma aquilae ATCC BAA-1896

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Truepera sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_assembly_name: V1.0 of Brucella_melitensis_bv_1_str_ 133

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis bv. 1 str. 133

ncbi_submitter: Beijing Institute of Diseae Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 1;x__Brucella melitensis bv. 1 str. 133


ncbi_country: USA: VA

ncbi_isolation_source: BEI Isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: US Food and Drug Administration


ncbi_country: China

ncbi_isolation_source: Moraine

ncbi_organism_name: Paracoccus everestensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI


ncbi_country: Chile

ncbi_organism_name: Piscirickettsia salmonis EM-90

ncbi_submitter: Fraunhofer Chile Research Center for Systems Biotechnology Bio-Computing Division


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 61 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus pettenkoferi


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Zhejiang University


ncbi_isolation_source: cold seep

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: IMG-taxon 2654588179 annotated assembly

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eubacterium sp. CAG:248

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:248


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom: Herefordshire

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: NIAB East Malling Research


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Auckland


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Chloroflexi bacterium CFX4

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium CFX4


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Flavipsychrobacter sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: University of La Rioja


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Kyoto University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG491

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: lung

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_assembly_name: freshwater MAG --- A4_bin-120

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: China: Shandong

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Ghana

ncbi_isolation_source: Hospital wastewater

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni NW

ncbi_strain_identifiers: NW

ncbi_submitter: Comparative Enteric Diseases Laboratory, Michigan State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni NW


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: plant material

ncbi_organism_name: Pectobacterium parvum

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_assembly_name: Sulfitobacter sp. EL44

ncbi_isolate: Sulfitobacter sp. strain EL44

ncbi_isolation_source: Gorgonian coral

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_strain_identifiers: Sulfitobacter sp. strain EL44

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: MER 65

ncbi_submitter: Jet Propulsion Laboratory


gtdb_type_species_of_genus: t

ncbi_organism_name: Hallella seregens ATCC 51272

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Hallella;s__Hallella seregens;x__Hallella seregens ATCC 51272


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Alkalibacillus flavidus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hubei

ncbi_isolation_source: soil

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: National University of Singapore


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Proteus hauseri

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Campylobacter fetus subsp. fetus 82-40

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. fetus;x__Campylobacter fetus subsp. fetus 82-40


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: USA: Wyoming; Yellowstone National Park

ncbi_isolation_source: hot spring microbial mat enrichment culture

ncbi_organism_name: Anoxybacillus ayderensis

ncbi_strain_identifiers: MT-Cab

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: bioreactor

ncbi_organism_name: Desulfovibrionaceae bacterium UBA5842

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Hydrogenedens sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__unclassified Candidatus Hydrogenedens;s__Candidatus Hydrogenedens sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridioides difficile P48

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_isolation_source: roadside hawk 11

ncbi_submitter: UFRJ


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin swab

ncbi_organism_name: Dermabacter hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Dictyoglomota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Roseibium album

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Italy

ncbi_isolation_source: starter

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Turin


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Pseudoduganella violacea

ncbi_strain_identifiers: CECT 8897

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: Morocco: Merzouga

ncbi_isolation_source: desert sand

ncbi_organism_name: Bacillus safensis

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Bacteroides sp. D1

ncbi_submitter: Broad Institute


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Muiribacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Muiribacteriota;x__unclassified Candidatus Muiribacteriota;s__Candidatus Muiribacteriota bacterium


ncbi_country: Canada: Ontario

ncbi_organism_name: Devosia sp. 17-2-E-8

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Ottawa

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Ottawa


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: The University of Texas at Dallas


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sam Houston State University


ncbi_organism_name: Enorma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Leifsonia shinshuensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loclat_bin-04712

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Frelighsburg; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-051

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Madrid

ncbi_isolation_source: bone

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1845R

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: University of Reims

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_organism_name: Hydrogenovibrio thermophilus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: caecum

ncbi_organism_name: Leyella lascolaii

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alloenteromonas pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__;o__;f__;g__Candidatus Alloenteromonas;s__Candidatus Alloenteromonas pullicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;s__Candidatus Alloenteromonas pullicola


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Leeuwenhoekiella aequorea

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shandong First Medical University


ncbi_country: Spain

ncbi_isolation_source: laboratory

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 112

ncbi_submitter: Brigham Young University


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter pittii DSM 9306

ncbi_submitter: University of Birmingham

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter pittii;x__Acinetobacter pittii DSM 9306


ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea: Bundang

ncbi_isolation_source: adult feces

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Brevibacterium antiquum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_isolate: Previously collected from blood cultures (R)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Sphingomonas aerophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFOXYC1_FULL_44_16


ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolate: AOP10_LA_L1 _bin _1

ncbi_organism_name: Serratia liquefaciens

ncbi_strain_identifiers: AOP10_LA_L1 _bin _1

ncbi_submitter: Genoscope


ncbi_country: USA: Hawaii

ncbi_organism_name: Streptomyces parvus

ncbi_submitter: University of Wisconsin Madiso


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Germany: Wetzlar

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sphingopyxis witflariensis

ncbi_submitter: Institute of Biochemistry and Biophysics


ncbi_organism_name: Candidatus Aminicenantaceae bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Aminicenantaceae;x__unclassified Candidatus Aminicenantaceae;s__Candidatus Aminicenantaceae bacterium


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Salmonella sp. NW527

ncbi_submitter: Sichuan University


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Musicola paradisiaca NCPPB 2511

ncbi_strain_identifiers: NCPPB 2511

ncbi_submitter: James Hutton Institute


ncbi_country: Gambia: Basse Santa Su

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_submitter: Nankai University


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Deep-Sea Hydrothermal Sediment

ncbi_organism_name: Pseudidiomarina sp. CB1

ncbi_submitter: Insititue of Microbiology Chinese Acadamy of Science


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Lunds Universitet

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Ground beef

ncbi_submitter: University of Texas at San Antonio


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: New York

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Chile: Valparaiso; Quintero Bay

ncbi_isolation_source: seawater

ncbi_organism_name: Marinobacter sp. AL4B

ncbi_submitter: Universidad de Valparaiso


ncbi_submitter: University Hospital Muenster


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: IMG-taxon 2639762569 annotated assembly

ncbi_organism_name: Leucobacter chromiiresistens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: New Zealand

ncbi_organism_name: Leptospira interrogans serovar Pomona

ncbi_submitter: Massey University


ncbi_isolation_source: hospital

ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mikawasima


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Acholeplasma sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Nonomuraea angiospora

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella sp. 741265107_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mariniflexile aquimaris


ncbi_organism_name: Opitutales bacterium


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium sp. NPDC051198


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Haiti

ncbi_isolation_source: stool sample from patient with cholera

ncbi_organism_name: Vibrio cholerae O1 str. 2010EL-2010H

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2010EL-2010H


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: water samples from two horizons (5 m and 20 m) were filtered through the net (size 27-um) and then filtered through nitrocellulose filters with a pore size of 0.22 um

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Blautia producta

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Boston; MA

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus M0379

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: The University of Auckland


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: blood

ncbi_submitter: Region Zealand


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Nitrosomonas sp. PLL12

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium ADurb.Bin219


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Intus Biosciences


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 16

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Tunisia

ncbi_isolation_source: water

ncbi_organism_name: Shewanella sp. 8A

ncbi_submitter: ANSES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: large colon

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Brazil

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Chlamydia trachomatis A/7249

ncbi_submitter: Sanger Institute


ncbi_organism_name: uncultured Neptunicoccus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Colombia

ncbi_isolation_source: AGROSAVIA

ncbi_organism_name: Pediococcus sp. AC40

ncbi_submitter: Agrosavia


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_country: Sweden: Gothenborg

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardioides thalensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: USA: CA

ncbi_isolation_source: turkey cheese sandwich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Vreelandella neptunia

ncbi_submitter: Hampton University


ncbi_organism_name: Escherichia coli TA206

ncbi_submitter: Broad Institute


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Microbacterium sp. NPDC096154

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Sphingobacteriales bacterium 48-107

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0782


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Nitrosomonadales bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Sea Water

ncbi_organism_name: Lentilitoribacter sp. Alg239-R112

ncbi_submitter: Elham Karimi


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-400

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Yale University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Glossina fuscipes fuscipes


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: University of Georgia


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: gracilaria

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Utilization of marine biological resources in the south China sea


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: JCVI


ncbi_country: China: Jiangxi province

ncbi_isolation_source: blood from piglet with acute sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Xanthomonas sp. XNM01

ncbi_submitter: University of Chicago


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland