ncbi_isolation_source: stool

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 2010C-3510


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Jilin

ncbi_genome_representation: full

ncbi_organism_name: Bifidobacterium sp. W8108

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_country: China: Zhengzhou

ncbi_isolation_source: feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: microbial pathogenic ecology group


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Princeton University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10353

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: USA: Bethesda; Maryland

ncbi_isolation_source: clinical

ncbi_organism_name: Bordetella hinzii

ncbi_submitter: NIH


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Huazhong Agricultural University


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_submitter: University of Oregon


ncbi_isolation_source: bacterial endocarditis

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodosalinus halophilus

ncbi_refseq_category: reference genome

ncbi_submitter: Shandong University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Fibrobacterales bacterium Fibro_01

ncbi_submitter: University of Queensland


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Cyanobacteria bacterium J06648_10

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06648_10


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Halobacillus karajensis

ncbi_submitter: URMITE


ncbi_country: USA: Canoe Cove; Nahant; MA

ncbi_isolation_source: filtered seawater; 0.2-1 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pugent Sound at Golden Gardens

ncbi_isolation_source: Water

ncbi_organism_name: Candidatus Pseudothioglobus singularis

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus singularis


ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG368

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: Soil

ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: University of Dundee


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Rectinemataceae bacterium

ncbi_submitter: Iowa State University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Klebsiella sp. GB_Kp047

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Pakistan

ncbi_isolation_source: throat

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: FDA


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_assembly_name: freshwater MAG --- Loc090519-6m_bin-1470

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Rhodobacterales bacterium 65-51

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pacific Ocean: The Mariana Trench

ncbi_isolation_source: deep sea water

ncbi_organism_name: Shewanella sp. MTB7

ncbi_submitter: Shanghai Ocean University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Armpit

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Abditibacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Finland

ncbi_isolation_source: Sheep fecal sample

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_isolation_source: groundwater

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp70


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 474

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: demosponge isolated at 1483 m depth

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Bristol


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: Rumen uncultured genome RUG13941

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: a pond on the Huanglong mountain; Sichuan

ncbi_isolation_source: a pond on the Huanglong mountain

ncbi_organism_name: Hymenobacter monticola

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: United Kingdom: Kew; Surrey

ncbi_isolation_source: soil associated with Quercus lobator

ncbi_organism_name: Paracoccus pantotrophus

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan

ncbi_isolation_source: urine

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Japan

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SC


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC061G12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Georgia; Atlanta

ncbi_isolation_source: environmental

ncbi_organism_name: Clostridium pasteurianum

ncbi_submitter: University of Cincinnati


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Kineococcus sp. SYSU DK010

ncbi_strain_identifiers: SYSU DK010

ncbi_submitter: Sun Yat-sen University


ncbi_isolate: SPRUCE 586

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 586

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Anhui; Tongling


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microcoleus vaginatus DQ-U2

ncbi_submitter: Institute of Hydrobiology


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Staphylococcus rostri

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Leon University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPLOWO2_01_FULL_46_25


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Germany

ncbi_isolation_source: starter culture

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 1217

ncbi_submitter: Brigham Young University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Segatella sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: Candidatus Reddybacter sp.

ncbi_submitter: University of Califronia, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Eikenella corrodens ATCC 23834

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Coleofasciculus sp. D1-CHI-01

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Jamaica: West Indies

ncbi_isolation_source: sugarcane

ncbi_organism_name: Pseudocitrobacter sp. RIT415

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: China: Guangdong

ncbi_isolation_source: sea water

ncbi_organism_name: Facilibium subflavum

ncbi_strain_identifiers: SYSU SYW-5

ncbi_submitter: Tradictional Chinese medicine Univeisity of Guangzhou


ncbi_organism_name: Roseomonas sp. 18066

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Thailand: Chonburi province

ncbi_isolation_source: fermented mussels

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: UCLA School of Dentistry

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Health


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Gelidibacter sediminis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Kelaniya


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Canada: British Columbia

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20111510


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: CRC RESIST


ncbi_organism_name: Yersinia pestis CMCC31004

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Bangladesh

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: Singapore

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sphingobacterium cellulitidis


ncbi_country: Turkmenistan: Mary

ncbi_isolation_source: Desert soil

ncbi_organism_name: Nonomuraea mesophila

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 51581

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: Canada: British Columbia;Vancouver

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Mixta calida


ncbi_organism_name: uncultured Sphingomonadales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Assembly DHS29 of Sep 2013

ncbi_country: France: Besancon

ncbi_isolation_source: nose of a patient in the Surgical Intensive Care Unit

ncbi_organism_name: Pseudomonas aeruginosa DHS29

ncbi_submitter: Hospital of Besancon - France


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Food production environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_organism_name: Caldicellulosiruptor bescii


ncbi_organism_name: Acinetobacter portensis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Hydrothermota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;x__unclassified Candidatus Hydrothermota;s__Candidatus Hydrothermota bacterium


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Lacinutrix sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas naejangsanensis

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: CSIRO


ncbi_organism_name: Anaerococcus mediterraneensis

ncbi_submitter: URMITE


ncbi_country: France: Regneville-sur-Mer

ncbi_isolation_source: river water

ncbi_organism_name: Enterococcus hirae


ncbi_isolation_source: Fermented yak milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: South Korea: Gyeonggi-do

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: mouse gut metagenome


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: NANJING NORMAL UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 478810

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 478810


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Marburg; Lahnberge

ncbi_isolate: MFS USC[alpha]

ncbi_isolation_source: forest soil collected in Oct 2013; Oct 2014; and Nov 2016

ncbi_organism_name: Candidatus Methylaffinis lahnbergensis

ncbi_strain_identifiers: MFS USC[alpha]

ncbi_submitter: Heriot-Watt University


ncbi_organism_name: Aquipuribacter nitratireducens

ncbi_submitter: Ningbo University


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_isolation_source: oral cavity- mouth

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella;x__unclassified Mitsuokella;s__Mitsuokella sp. oral taxon 131;x__Mitsuokella sp. oral taxon 131 str. W9106


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: uncultured Micromonosporaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_organism_name: Chlamydiae bacterium SM23_39

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium SM23_39


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: zhejiang university


ncbi_organism_name: Paenarthrobacter sp. NPDC091669

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Anhui agricultural university


ncbi_organism_name: Lysobacter zhanggongensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Azonexus sp.


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Hwanghaeella sp. LZ110

ncbi_submitter: THIRD INSTITUTE OF OCEANOGRAPHY,MINISTRY OF NATURAL RESOURCES


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolate: Propionibacterium freudenreichii subsp. shermanii

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_country: Morocco

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: Germany: North Sea off Dangast

ncbi_isolation_source: marine sediment

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: other

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Endomicrobium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: LanzaTech Inc


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: microalgal biofuel cultivation pond

ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: Lawrence Livermore National Laboratory


ncbi_country: USA: New Hampshire; Mont Vernon

ncbi_isolation_source: ash from residential wood pellet stove

ncbi_organism_name: Dermacoccus nishinomiyaensis


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: Australia: Magnetic Island; Queensland

ncbi_organism_name: Vibrio sp. CC007

ncbi_submitter: Newcastle University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: USFDA


ncbi_country: Uganda: Kampala

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Marian University College


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: New Zealand

ncbi_isolation_source: beef trim

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Actinomyces oris

ncbi_submitter: University of Malaya


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: DOE JGI


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. JMF_01 NE2

ncbi_strain_identifiers: JMF_01 NE2

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: CCUG 26878 T

ncbi_organism_name: Neisseria oralis

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. S1A1-7

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: Oceanic sample

ncbi_organism_name: Sulfitobacter sp. M220

ncbi_submitter: University of Oldenburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Streptococcus agalactiae FSL S3-268

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB51_CON L2:4

ncbi_submitter: University of Canterbury


ncbi_country: Indonesia:Java; Yogyakarta

ncbi_organism_name: Streptomyces rhizosphaericus

ncbi_submitter: Microbial Biotechnology Lab from Konkuk University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Waltera acetigignens

ncbi_submitter: UIUC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hebei Medical University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA

ncbi_isolation_source: Subject with severe chronic periodontitis

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype e str. SCC393


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Janibacter anophelis NBRC 107843

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides uniformis


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Methylotenera sp.

ncbi_submitter: NIOO KNAW


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Micronesia: Yap

ncbi_isolation_source: lung fluid

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sudan

ncbi_submitter: University of Khartoum


ncbi_organism_name: Bacillus sp. A31

ncbi_submitter: Northeast Forestry University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. A31


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Jiaxing

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_assembly_name: IMG-taxon 2616645014 annotated assembly

ncbi_isolate: DC

ncbi_organism_name: Armatimonadetes bacterium DC

ncbi_strain_identifiers: DC

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium DC


ncbi_country: China: Fujian

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: City university of Hong Kong


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Petersham; MA

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium sp. AN73

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Washington


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Suqian

ncbi_isolation_source: dimethylphenol polluted soil

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: NJAU


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli


ncbi_country: Israel

ncbi_isolation_source: Root Surface

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: ARO


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Hyalomma scupense


ncbi_organism_name: uncultured Salinivenus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen; Guangdong

ncbi_organism_name: Bradyrhizobium jicamae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Uruguay: Juanico; Canelones

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; Uruguay winery wastewater

ncbi_submitter: Karlsruhe Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Gracilibacteria bacterium S5_H10


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Iowa

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM18000


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Gillisia sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: uncultured Sphaerochaeta sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Weissella confusa

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: lake water

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Clostridium cibarium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCSF


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: Japan:Hokkaido; Akan

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis californica

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Cote d Ivoire

ncbi_isolation_source: bovine milk; sour milk fermented

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_organism_name: Curtobacterium citreum

ncbi_submitter: Rochester Institute of Technology


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacter hominis

ncbi_submitter: EMG


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Moraxellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_isolation_source: pork

ncbi_submitter: Yangzhou University


ncbi_country: China: Qinghai

ncbi_organism_name: Apibacter sp. B3813

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: India: Jharkhand; Surajkund

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Tepidiphilus thermophilus

ncbi_submitter: Joint Genome Institute


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 2


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Paris Saclay University


ncbi_organism_name: uncultured Maribacter sp.


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Balneola sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus B4264

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus B4264


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Burkholderiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Helicobacter sp. 13S00482-2

ncbi_submitter: Utrecht University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Akkermansia sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_isolation_source: urine

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: India

ncbi_isolation_source: fish intestine

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_country: France: Berre lagoon; Mediterranean coast

ncbi_isolation_source: coastal sediments; brackish; contaminated

ncbi_organism_name: Pseudodesulfovibrio hydrargyri

ncbi_submitter: Universite de Pau et des Pays de l'Adour


ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. 168


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 3777A

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Malaysia: Perak; Ipoh

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universitiy Malaysia Pahang


ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_country: USA: California

ncbi_isolation_source: host body

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Uppsala University


ncbi_organism_name: Helicobacter apodemus


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_country: USA: Oregon

ncbi_organism_name: Rhizobium sp. B209b/85

ncbi_submitter: Oregon State University


ncbi_country: Australia

ncbi_isolation_source: Green bean

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptomyces sp. SAI-119

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Enterobacter roggenkampii UCI 39

ncbi_strain_identifiers: UCI 39

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter roggenkampii;x__Enterobacter roggenkampii UCI 39


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_strain_identifiers: OSS 703

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Streptomyces sp. NPDC051658

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Pseudomonas sp. CJQ_8

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Herbaspirillum robiniae

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Lentibacillus salinarum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- KTt_bin-2886

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: France: Toulouse

ncbi_isolation_source: Bones

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alaska Anchorage


ncbi_organism_name: Burkholderia contaminans

ncbi_strain_identifiers: CAMPA 1809

ncbi_submitter: Universidad Nacional de La Plata


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Hangzhou

ncbi_isolation_source: drainage fluid

ncbi_submitter: China Agriculture University


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Screen swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_organism_name: Woeseia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Shenzhen

ncbi_isolation_source: waste water

ncbi_organism_name: Pandoraea cepalis

ncbi_submitter: Tsinghua University


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Firmicutes bacterium UBA3546

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3546


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Vibrio sp. B1FIG11

ncbi_submitter: UMR 1253, INRA/Agrocampus


ncbi_country: Belgium

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_country: China: Lasa

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: LMU Munich


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_assembly_name: P2PMeth1 Assembly 1

ncbi_isolation_source: Coal seam gas water treatment pond

ncbi_organism_name: Stappia sp. P2PMeth1

ncbi_submitter: Griffith University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_country: Kenya

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Amycolatopsis sp. NPDC024027

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EBI


ncbi_country: Greece: Santorini; Kolumbo

ncbi_isolation_source: submarine volcano

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Hellenic Centre for Marine Research (HCMR)


ncbi_country: Russia

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Streptohalobacillus salinus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Raoultibacter massiliensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Serbia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Amaricoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


ncbi_isolation_source: Lamb

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Nebraska

ncbi_isolation_source: corn silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_isolate: Alphaproteobacteria sp. RBC057

ncbi_isolation_source: wastewater biofilm

ncbi_strain_identifiers: Alphaproteobacteria sp. RBC057

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eshraghiella crossota CAG:259

ncbi_submitter: DTU


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Nanyang Technological University


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Argentina

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Switzerland: Lucerne

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus COAS6112

ncbi_submitter: Broad Institute


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: University Hospital of Abidjan-Cocody

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_country: China: Yunnan Province

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Foshan University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces from healthy subject

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: FAH

ncbi_submitter: The First Affiliated Hospital of Sun Yat-sen University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: Pantoea sp. KXB24

ncbi_submitter: University of Florida


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA

ncbi_organism_name: Bordetella pertussis H918

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: VA

ncbi_isolation_source: expectorated sputum

ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: hand

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_assembly_name: Rumen uncultured genome RUG10780

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Turkey: Camalti saltern area

ncbi_organism_name: Halomonas smyrnensis AAD6

ncbi_submitter: Marmara University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: DaPeng Bay

ncbi_isolation_source: cerata

ncbi_organism_name: Cognatitamlana onchidii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: ChunLab, Inc.


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 179

ncbi_submitter: Oregon State University


ncbi_country: Chile: Temuco

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Melioribacteraceae bacterium


ncbi_organism_name: Candidatus Campbellbacteria bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;x__unclassified Candidatus Campbellbacteria;s__Candidatus Campbellbacteria bacterium


ncbi_organism_name: Chlamydia sp. 12-01

ncbi_submitter: Mahidol University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;x__unclassified Chlamydia;s__Chlamydia sp. 12-01


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: bioreactor

ncbi_organism_name: Epsilonproteobacteria bacterium UBA1345

ncbi_submitter: University of Queensland


ncbi_submitter: University of Milan


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-79

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SZAS LIN-79

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA


ncbi_organism_name: Listeria monocytogenes SLCC2372

ncbi_submitter: ERA-NET / Spatelis


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UMCG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Shandong

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: swab swine carcass (Sus scrofa domesticus)

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Poland: Lodz Province; Belchatow; Municipal Landfill

ncbi_isolation_source: rhizosphere of willow

ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Nicolaus Copernicus University Faculty of Biological and Veterinary Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Stockholm University


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA4539

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: North Selangor

ncbi_isolation_source: peat

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NBC_00386

ncbi_submitter: Technical University of Denmark


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: Italy: Povo; fraction of Trento

ncbi_isolation_source: intestine

ncbi_organism_name: Neopoerus faecalis

ncbi_submitter: University of Trento


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Micromonosporaceae bacterium KJ-029

ncbi_submitter: Kitasato Institute for Life sciences, Kitasato University


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium RIFCSPHIGHO2_02_FULL_42_14


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: affine MC_211

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: KCKM 0112

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: organic falls

ncbi_organism_name: Vibrio sp. Y20_XG_PY13

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Paradevosia shaoguanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: wastewater

ncbi_organism_name: Trichococcus sp.


ncbi_country: USA: RI

ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg;x__Salmonella enterica subsp. enterica serovar Senftenberg str. 423984-2


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Mediterraneibacter massiliensis

ncbi_submitter: University of California, Davis


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Nostoc sp. RI_552

ncbi_submitter: GNS Science


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece: Santorini; Kolumbo

ncbi_isolation_source: submarine volcano

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hellenic Centre for Marine Research (HCMR)


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella michiganensis


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Water sample from NSHQ14 Well

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia

ncbi_isolation_source: large colon

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Alloyangia pacifica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Blautia hydrogenotrophica

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin24

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: HIE bin24

ncbi_submitter: Monash University


ncbi_organism_name: Dactylosporangium sp. CS-047395

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Brooklawnia sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Phormidesmis sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: 37 Military Hospital


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: IPO 634

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_submitter: Kyoto University


ncbi_organism_name: uncultured Ktedonobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_organism_name: candidate division CPR2 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CPR2;s__candidate division CPR2 bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrosphaera sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: Switzerland

ncbi_isolation_source: Catheter

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Guangxi University


ncbi_country: Spain: Asturias

ncbi_organism_name: Yaniella sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: EMG


ncbi_isolation_source: fish gut metagenome


ncbi_country: USA: WA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Nonomuraea dietziae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_isolation_source: Throat swab 14

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Middletown

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Mali

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Leuconostoc mesenteroides


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research