ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_level: Contig

ncbi_isolation_source: urethral secretions

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Aerobic fed-batch lab bioreactor; inoculated from river sediment microbial communities and fed with benzalkonium chloride plus dextrin/peptone

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_strain_identifiers: DPB

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


gtdb_representative: t

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Hengyang

ncbi_isolation_source: blood

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Caldimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Streptomyces cavourensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Asticcacaulis taihuensis

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_isolate: SPRUCE 332

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 332

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Aeromonas sp. A600620

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: New Zealand

ncbi_isolation_source: marine sponge

ncbi_organism_name: Kiritimatiellota bacterium

ncbi_submitter: ETH Zurich


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium


ncbi_isolate: AOP43_B2_surf _bin _8

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP43_B2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Chlorobium sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut metagenome


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Texas

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Changchun

ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: School of Plant Protection


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_isolation_source: caprine 4 month old female brain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud - Peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Affiliated Hospital of Academy of Military Medical Science


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: bile

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Microbacterium tenebrionis

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Acinetobacter johnsonii SH046

ncbi_submitter: Broad Institute


ncbi_organism_name: Thiobacillaceae bacterium


ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Tanzania: Kilakala swamp

ncbi_organism_name: Leptospira sp. serovar Kenya str. Sh9

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;x__unclassified Leptospira;s__Leptospira sp. serovar Kenya;x__Leptospira sp. serovar Kenya str. Sh9


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Changhai Hospital Affiliated to Naval Military Medical University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C93_11

ncbi_submitter: IGS


ncbi_organism_name: Phytobacter ursingii

ncbi_refseq_category: reference genome

ncbi_submitter: University of Oxford


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: The ithree institute


ncbi_assembly_name: Rumen uncultured genome RUG10960

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Bacillus mycoides

ncbi_strain_identifiers: TIAC 3558

ncbi_submitter: Ghent University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05263

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__environmental samples;s__uncultured Flavobacteriia bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Pauljensenia sp. UMB1177

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Trueperella pecoris

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: wVulC

ncbi_strain_identifiers: wVulC

ncbi_submitter: Universite de Poitiers - CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont of Armadillidium vulgare;x__Wolbachia endosymbiont of Armadillidium vulgare str. wVulC


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: AAFC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7111

ncbi_submitter: University of Queensland


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Cetobacterium somerae

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_submitter: RARI


ncbi_country: China: Fujian

ncbi_organism_name: Acinetobacter sp. YH12068_T

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Providencia sp. PROV101

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0337R

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brachyspiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: VA

ncbi_isolation_source: water gallon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: Streptomyces sp. NPDC088141

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: Fluid in the heart pericardial effusion

ncbi_organism_name: Vagococcus salmoninarum

ncbi_submitter: Erciyes University


ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Georgia


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Acinetobacter sp. FDAARGOS_559

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: Rumen uncultured genome RUG10628

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Enterococcus hirae canine HQ MAG

ncbi_isolate: Enterococcus hirae canine HQ MAG

ncbi_isolation_source: Canine feces

ncbi_organism_name: Enterococcus hirae ATCC 9790

ncbi_strain_identifiers: Enterococcus hirae canine HQ MAG

ncbi_submitter: Vetgenomics, S.L

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus hirae;x__Enterococcus hirae ATCC 9790


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_isolate: CTENA5 12EA1

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_strain_identifiers: CTENA5 12EA1

ncbi_submitter: University of Vienna


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Detritus agregates formed in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Labrenzia sp. THAF82

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M13048

ncbi_submitter: Broad Institute


ncbi_country: Tanzania

ncbi_isolation_source: 1970 vaccine stock

ncbi_organism_name: Mycoplasma mycoides

ncbi_submitter: CIRAD


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: NCTC 8233

ncbi_submitter: NIZO food research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Qilu University of Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ligilactobacillus ruminis


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin101

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: MSU bin101

ncbi_submitter: Monash University


ncbi_country: Pacific Ocean

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stanford University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Ocean University of China


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Providencia stuartii

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_level: Chromosome

ncbi_organism_name: Escherichia coli M12

ncbi_submitter: Brigham Young University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDH8C106P

ncbi_submitter: South China Agricultural University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: India: Manikaran

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermus parvatiensis

ncbi_strain_identifiers: RL

ncbi_submitter: University of Delhi

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Guizhou

ncbi_isolation_source: Sediments from karst caves in Guizhou

ncbi_organism_name: Pedobacter sp. B4-66

ncbi_submitter: College of Life Sciences, Guizhou Normal University


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: oropharynx; sputum; or bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Japan: Pacific Ocean

ncbi_isolation_source: Sea water (open ocean)

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Austria: National Park Hohe Tauern; Rauriser Urwald

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Polynucleobacter sp. AP-Latsch-80-C2

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Shigella flexneri

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: China: Jilin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: USA: Florida

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: University of Florida


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Parolsenella sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil:Conceicao do Araguaia

ncbi_isolation_source: Cervical ligament and lymph node

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides sp. CAG:770

ncbi_submitter: DTU


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_assembly_name: freshwater MAG --- YR4_bin-1020

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMB3-1-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Station ALOHA; 100 km north of Oahu; HI; USA

ncbi_isolation_source: base of a wide chlorophyll maximum feature; near the base of the euphotic zone

ncbi_organism_name: Prochlorococcus sp.P1363

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California

ncbi_strain_identifiers: UCI 5

ncbi_submitter: USDA-ARS


ncbi_organism_name: Streptomyces sp. NRRL F-2799

ncbi_strain_identifiers: NRRL F-2799

ncbi_submitter: University of Illinois


ncbi_isolation_source: Sponge: Aplysina aerophoba

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Israel: Tel-Aviv

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel-Aviv University


ncbi_organism_name: Mesorhizobium dulcispinae

ncbi_submitter: University of Pretoria


ncbi_country: Switzerland

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Puerto Rico: Patillas

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Venezuela: Distrito Capital; Municipio Libertador; Caracas

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Black Hills; junction of FR222 and FR222-2C; North America; South Dakota; Lawrence County

ncbi_isolation_source: louse from fur of Tamias minimus

ncbi_organism_name: Candidatus Lightella neohaematopini

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__lice endosymbionts;g__Candidatus Lightella;s__Candidatus Lightella neohaematopini


ncbi_country: Belarus: Vitebsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW460-12

ncbi_submitter: Arkin Lab


ncbi_organism_name: Cyanobium sp. NIES-981

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudomonas sp. GW458-12-9-14-LB1


ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: University of Oslo


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_country: South Africa

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA: WA

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: University of Washington


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_isolate: AOP31_B2_surf _bin _13

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP31_B2_surf _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_organism_name: Salmonella sp. 2021_16

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Candidatus Makana argininalis

ncbi_submitter: University of California, Riverside

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;x__Enterobacterales incertae sedis;g__Candidatus Makana;s__Candidatus Makana argininalis


ncbi_organism_name: Candidatus Rhabdochlamydia sp.

ncbi_submitter: The Helmholtz Centre of Environmental Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp.


ncbi_organism_name: Salmonella sp. SAL04157

ncbi_submitter: Zhejiang university


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Medical City


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Nonomuraea sp. 10N515B

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Swansea University


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tang lab


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Ontario

ncbi_submitter: University of Toronto


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: England

ncbi_isolation_source: bile

ncbi_submitter: University of Liverpool


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway: Drammen

ncbi_isolation_source: ear

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: C

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: nasopharynx


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Inha University


ncbi_assembly_name: Rumen uncultured genome RUG11003

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: metagenome

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Distal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: University of Malaya


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: NY

ncbi_isolation_source: feces goose branta

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudooceanicola sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Germany: Munich

ncbi_isolation_source: expanded salami packages

ncbi_organism_name: Companilactobacillus halodurans

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Italy

ncbi_isolation_source: swine salami paste

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: One-day-old chicks

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Thiomicrospira sp.

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: MA

ncbi_isolation_source: shrimp


ncbi_country: Australia: Nambung

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium diversitatis

ncbi_strain_identifiers: CNPSo 4019

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: Xanthomonas citri pv. malvacearum

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. malvacearum


ncbi_isolation_source: gastric fluid

ncbi_organism_name: Helicobacter cetorum

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Portugal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: Missouri Soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Ohio State university


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmn

ncbi_submitter: NHGRI/NIH


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudosphingobacterium sp.


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Jena

ncbi_isolation_source: throat swab neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_country: Malaysia: Alor Setar

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat products

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas sp. UBA2302

ncbi_submitter: University of Queensland


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


gtdb_type_species_of_genus: t

ncbi_country: Netherlands

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Nanjing Agricultural university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: EMG


ncbi_organism_name: Sedimentibacter acidaminivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter sp. MGH119

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH119


ncbi_country: South Korea

ncbi_isolation_source: upper jaw tissue with sinusitis

ncbi_organism_name: Fusobacterium hwasookii ChDC F128

ncbi_strain_identifiers: ChDC F128

ncbi_submitter: Chosun University


ncbi_country: Norway: Stavanger

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: H

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Corvallis


ncbi_organism_name: Sphingobacterium corticibacterium

ncbi_submitter: University of Fribourg


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: AOP35_03-ete_surf _bin _15

ncbi_strain_identifiers: AOP35_03-ete_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Finegoldia magna

ncbi_submitter: University of Sheffield


ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Comamonas granuli

ncbi_submitter: Xiamen University


ncbi_assembly_name: Salinibacter NZ140

ncbi_organism_name: Salinibacter grassmerensis

ncbi_submitter: IMEDEA


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T57397

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_submitter: Chang Gung Genomic Medical Center, Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis;x__Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67


ncbi_country: USA: Hickory Corners; MI

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. KBS0703

ncbi_submitter: Indiana University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Rhodococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Advenella faeciporci

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Cyanobacteria bacterium MAG CAR4_bin_6

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium MAG CAR4_bin_6


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood; anaerobic bottle

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Chiayiivirga sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-379

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Atopobiaceae bacterium AM39-12AC

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Spain: Leon

ncbi_isolate: Leon-isolate

ncbi_isolation_source: culture maintained in Leon; missing plasmid pSCL3

ncbi_organism_name: Streptomyces clavuligerus

ncbi_strain_identifiers: ATCC 27064;Leon-isolate

ncbi_submitter: John Innes Centre


ncbi_isolate: Pseudomonas sp. Irchel 3A7

ncbi_organism_name: Pseudomonas sp. Irchel 3A7

ncbi_strain_identifiers: Pseudomonas sp. Irchel 3A7

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Grand Staircase Escalante National Monument; Utah

ncbi_isolation_source: wet rock wall

ncbi_organism_name: Aphanothece saxicola GSE-SYN-MK-01-06B

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Wuhan University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. M15

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: China: Nanjing

ncbi_isolation_source: Infected pancreatic necrosis

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Jinling Hospital, Medical School of Nanjing University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Gilliamella sp. CG22

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Sochi

ncbi_isolation_source: hot water systems

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Fenollaria sp.

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Fenollaria;x__environmental samples;s__uncultured Fenollaria sp.


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Taiwan

ncbi_isolation_source: hospital environment

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Amycolatopsis sp. NPDC049253

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Turneriella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Balneola sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;g__Balneola;x__environmental samples;s__uncultured Balneola sp.


ncbi_organism_name: Haemophilus massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Spiroplasma chrysopicola DF-1

ncbi_submitter: Academia Sinica


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Tistrella mobilis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: China: Shihezi

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Xinjiang University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: New York; Buffalo

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: University at Buffalo


ncbi_country: USA: NC

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bifidobacterium dentium Bd1

ncbi_submitter: Department of Genetics, Anthropology and Evolution, University of Parma, Parma, Italy


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom: Devon

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Lucinoma borealis)


ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Egypt

ncbi_isolation_source: cheese (Domiati)

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 1436

ncbi_submitter: Brigham Young University


ncbi_assembly_name: Rumen uncultured genome RUG10456

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: Tissue Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: cecum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: VS377;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Antarctica

ncbi_organism_name: Corynebacterium pygosceleis

ncbi_submitter: Masaryk University


ncbi_organism_name: Raoultella planticola

ncbi_submitter: EMG


ncbi_country: India: Nagpur

ncbi_isolation_source: tannery waste

ncbi_organism_name: Serratia marcescens

ncbi_submitter: CSIR-National Environmental Engineering Research Institute (CSIR-NEERI)


ncbi_country: USA: Durham; NC

ncbi_organism_name: Corynebacterium sp. MSK035

ncbi_submitter: Duke University


ncbi_country: Germany: Hannover

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China:Hong Kong

ncbi_isolation_source: not known


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Pseudomonas sp. SIMBA_068

ncbi_submitter: SIMBA


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Pseudomonas sp. 2024-204

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA6811

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA6811


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;x__Mycobacterium intracellulare MIN_052511_1280


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: Hama Hama River

ncbi_isolation_source: plankton

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Regiella insecticola

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Regiella;s__Candidatus Regiella insecticola


ncbi_organism_name: Oribacterium sinus


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Algeria

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter animicus

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WI

ncbi_isolation_source: boiled ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: China: Hangzhou

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Semmelweis University


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B3-1-6

ncbi_submitter: Curtin University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM97-61

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: India: Jajanmugali village; Basavakalyana taluk; Bidar district; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: part of plant

ncbi_organism_name: Streptomyces scabiei

ncbi_strain_identifiers: LBUM 1480

ncbi_submitter: Universite de Moncton


ncbi_organism_name: Sporolactobacillus laevolacticus DSM 442

ncbi_strain_identifiers: DSM 442

ncbi_submitter: CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: phyllosphere

ncbi_organism_name: Pseudomonas sp. S04

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh

ncbi_isolation_source: Sandy soil

ncbi_organism_name: Sphaerisporangium melleum

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0495

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Luteimonas salinilitoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacillales bacterium UBA7029

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_submitter: RARI


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 246555-3


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Argentina

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T35622

ncbi_submitter: Broad Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Xanthomonas axonopodis

ncbi_submitter: North-West University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_isolate: AOP35_03H_surf _bin _17

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP35_03H_surf _bin _17

ncbi_submitter: Genoscope


ncbi_submitter: Makerere University


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Ningbo

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: bone tibia

ncbi_organism_name: Staphylococcus sp. HMSC034G11

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Pacific Ocean: Mariana trench

ncbi_isolate: LMO Bin59

ncbi_isolation_source: marine sediment; cultured under 152Mpa pressure

ncbi_organism_name: Acinetobacter beijerinckii

ncbi_strain_identifiers: LMO Bin59

ncbi_submitter: Shanghai Jiaotong UNI


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Texas; Corpus Christi

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio sp. Hep-1b-8

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Aalborg University


ncbi_country: China: Hangzhou; Sir Run Run Shaw Hospital ICU

ncbi_isolation_source: Infusion stand_P63_BU16

ncbi_submitter: University of Birmingham


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Leptospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: China University of Mining and Technology, Beijing


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human gut

ncbi_organism_name: Pediococcus acidilactici


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Thapar Institute of Engineering & Technology


ncbi_isolation_source: intestinal content

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: ChinaCDC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Steroidobacterales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Streptomyces sp. NPDC088146

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-0919

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Massachusetts

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Pasteurella sp. PK-2025

ncbi_submitter: University of Bern


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22696;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: CSIRO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita' degli Studi di Milano


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;x__unclassified Veillonella;s__Veillonella sp. oral taxon 158;x__Veillonella sp. oral taxon 158 str. F0412


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_country: Slovenia

ncbi_organism_name: Prevotella sp. E13-17

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Georgia

ncbi_isolation_source: Vidalia onion field

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of Georgia


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_submitter: Guangzhou Medical University


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Achromobacter spanius

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Northeast Normal University


ncbi_country: India: Jawhar

ncbi_isolation_source: water from water well

ncbi_organism_name: Escherichia coli O139:H28 str. E24377A

ncbi_submitter: Datar Genetics Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O139:H28;x__Escherichia coli O139:H28 str. E24377A


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Marivivens sp.

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12267

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: milk product

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Illinois

ncbi_isolation_source: environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: North Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Winogradskyella sp. HaHa_3_26

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: USA: St. Louis; Missori

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_country: Reunion

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Poland: Kielce

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Portugal

ncbi_submitter: University of Aveiro


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Streptomyces sp. NPDC006422

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter sp. 243_ASPC

ncbi_submitter: University of Washington


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides fragilis CL05T00C42

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Roodeplaat

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium genosp. SA-3

ncbi_submitter: University of Pretoria


ncbi_country: Czech Republic

ncbi_organism_name: Pseudomonas typographi

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Xiamen University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-19

ncbi_submitter: Rothamsted Research


ncbi_country: USA: KS

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: China

ncbi_isolation_source: alcohol fermentation pit mud

ncbi_organism_name: Heyndrickxia vini

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Klebsiella sp. GG_Kp149


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Singapore

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_country: Antarctica: Mackay Glacier regions; Benson Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Monash University


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: France: Bordeaux

ncbi_organism_name: Paenibacillus faecis

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Microbacterium sorbitolivorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces yerevanensis

ncbi_submitter: University of Illinois


ncbi_country: Malaysia

ncbi_isolation_source: cerebrospinal fluid (CSF)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: San Francisco; CA

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: feces

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Selenomonadaceae bacterium


ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: stool

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of California San Francisco


ncbi_country: Germany: Wolfenbuettel

ncbi_isolation_source: surface freshwater

ncbi_organism_name: Lacipirellula limnantheis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- YR_bin-1536

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- AM-sed-core3-D0_bin-429

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Mesorhizobium sp. WSM4083

ncbi_submitter: Murdoch University


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Sediminibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paraburkholderia aspalathi

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: SCPM-O-B-15010 (KrGor)

ncbi_submitter: SRCAMB


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Paractinoplanes rhizophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: AOP1_F1_surf _bin _22

ncbi_organism_name: Vreelandella alkaliphila

ncbi_strain_identifiers: AOP1_F1_surf _bin _22

ncbi_submitter: Genoscope


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycolicibacterium sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Ferrimonas balearica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Venezuela

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University