ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Southern University of Science and Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Czech Republic

ncbi_genome_representation: full

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Boulder; Colorado

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Delaware


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: t

ncbi_country: Mongolia:Tov; Terelj

ncbi_isolation_source: Soil

ncbi_organism_name: Paractinoplanes tereljensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_type_material_designation: assembly from type material


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Xizang

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: fresh feces

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Hong Kong

ncbi_isolation_source: Biopsy

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC055A01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Escherichia coli

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AP

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg;x__Salmonella enterica subsp. enterica serovar Senftenberg str. 423984-1


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Leptothrix ochracea


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Brevibacillus centrosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Germany

ncbi_strain_identifiers: Fec 67

ncbi_submitter: Karolinska Institute


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: Stockholm University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactobacillus sp. CBA3606

ncbi_submitter: world institute of kimchi


ncbi_country: China: Hangzhou

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loc090116-4m_bin-0830

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: South Korea: Taean coast

ncbi_isolation_source: beach sand

ncbi_organism_name: Pollutimonas harenae

ncbi_refseq_category: reference genome

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Lawsonella clevelandensis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 17A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_country: Senegal

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: Burkholderia sp. CQ001

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Enorma sp.

ncbi_submitter: DOE JGI


ncbi_country: USA

ncbi_isolation_source: sludge from a mesophilic anaerobic wastewater digester enriched on phosphite and carbon dioxide

ncbi_organism_name: Tepidanaerobacter sp. EBM-49

ncbi_submitter: UC Berkeley


ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Fimbriimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: APC Microbiome Ireland


ncbi_country: Switzerland: Sankt Gallen

ncbi_isolation_source: Hand

ncbi_organism_name: Cedecea davisae

ncbi_submitter: Center for Laboratory Medicine


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: alar crease

ncbi_organism_name: Staphylococcus epidermidis NIHLM070

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Mycobacterium avium

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Corynebacterium sp. LK2567

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: Norway: More og Romsdal

ncbi_isolation_source: salmon tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA4256

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia: Queensland

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Queensland Health Forensic and Scientific Services


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: wastewater

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: BEI Resources


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Toronto


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Enorma massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Limnospira platensis CENA650

ncbi_submitter: Center for Nuclear Energy in Agriculture (CENA) -University of Sao Paulo (USP)


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Listeria innocua

ncbi_submitter: University of Dhaka


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Yangzhou University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP35_02H_surf _bin _20

ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_strain_identifiers: AOP35_02H_surf _bin _20

ncbi_submitter: Genoscope


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Martelella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Streptococcus peroris

ncbi_submitter: EMG


ncbi_country: United Kingdom:Barking

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_assembly_name: genome

ncbi_isolation_source: coal mine

ncbi_organism_name: Skermanella stibiiresistens SB22

ncbi_submitter: State Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Clostridioides difficile P45

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Promicromonosporaceae bacterium W15

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: WASHINGTON UNIVERSITY IN ST LOUIS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Olsenella sp.


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: Guangdong Institute Of Microbiology


ncbi_country: Pakistan

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: NIBGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: University of Southern California


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Actinomyces graevenitzii


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_country: Australia: Adelaide

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_strain_identifiers: ATCC BAA-1163

ncbi_submitter: The Australian Wine Research Institute


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


gtdb_type_species_of_genus: t

ncbi_country: China: Nanning

ncbi_isolation_source: coral

ncbi_organism_name: Exilibacterium tricleocarpae

ncbi_submitter: Guangxi University


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_country: Mexico

ncbi_isolation_source: Ascitis

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Olsenella uli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Texas

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: stomach

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: MIT


ncbi_assembly_level: Chromosome

ncbi_country: Ireland: Dublin

ncbi_isolation_source: periorbital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Trinity College Dublin


ncbi_submitter: Zhejiang university


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_submitter: Harvard University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maunalua Bay; Oahu; Hawaii

ncbi_isolation_source: sand flats

ncbi_organism_name: Leisingera sp. JC1

ncbi_submitter: University of Connecticut


ncbi_country: Czech Republic

ncbi_isolation_source: midguts

ncbi_organism_name: Entomospira entomophila

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Belgium

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: Wageningen University & Research


ncbi_submitter: University of KwaZulu Natal


ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: China: Yunnan; Kunming

ncbi_isolation_source: stem

ncbi_organism_name: Enterobacter mori

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Portugal: Azores

ncbi_isolation_source: soil

ncbi_strain_identifiers: BGSC 4CD1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar graciosensis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Skin

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA145

ncbi_submitter: Broad Institute


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA: DC

ncbi_isolation_source: Skin swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: JCVI


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS2

ncbi_organism_name: Methylomonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0664


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-76

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Argentina

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_organism_name: Cyanobacteria bacterium P01_H01_bin.74

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_H01_bin.74


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Streptomyces harbinensis

ncbi_submitter: Microbial Biotechnology lab


ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B28(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: EMG


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Woodwardiibium gallinarum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Woodwardiibium;s__Candidatus Woodwardiibium gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Woodwardiibium;s__Candidatus Woodwardiibium gallinarum


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: USA: CA

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: Brazil: Recife; Pernambuco

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces iakyrus

ncbi_strain_identifiers: NRRL ISP-5482

ncbi_submitter: University of Illinois


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Vampirovibrio sp.

ncbi_submitter: University of Alicante


ncbi_isolate: STB-G

ncbi_organism_name: Mycobacterium canettii CIPT 140070005

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070005


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Ulvibacter sp.


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 83

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 83

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Embleya sp. NPDC059213

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP35_02H_surf _bin _4

ncbi_organism_name: Psychroflexus sp.

ncbi_strain_identifiers: AOP35_02H_surf _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces chattanoogensis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Collinsella sp. HCP3S3_A8

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13580

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Bielefeld University


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: National Medicines Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany: Nuthetal

ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pivers Island (Duke Marine Lab); NC

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Bronchoalveolar lavage (BAL)

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Campinas

ncbi_isolation_source: perfusion fluid

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: USP


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Spain: Ruidera; Castilla

ncbi_isolation_source: Lab maintained population of field collected O. laevigatus

ncbi_organism_name: Serratia sp. OLJL1

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. OLJL1


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_country: Germany

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: Sil MILK 2

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: CSF

ncbi_organism_name: Brucella suis CNGB 247

ncbi_strain_identifiers: CNGB 247

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis CNGB 247


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99688;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolate: metabat2_pooled_metaflye.1518 MAG

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.1518 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Georgia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_assembly_name: Rumen uncultured genome RUG10633

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: UPMC Children s Hospital of Pittsburgh; Pittsburgh; Pennsylvania

ncbi_isolation_source: laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: CNCTC 10;84 Cas9 AEKOrevertant

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodobiaceae bacterium UBA1906

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine

ncbi_organism_name: Phycisphaerales bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lausanne University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 3087

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sodaliphilus sp.


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Peru: Lima

ncbi_isolation_source: liver

ncbi_submitter: Universidad Nacional Mayor de San Marcos

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: skin salmon

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa08

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli FDA517

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acidithiobacillus ferriphilus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Agroscope


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG11787

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: terrestrial

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Leptotrichiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Niallia circulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Paenalcaligenes hominis

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Rangsdorf

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_country: USA: WA

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Arthrobacter sp. KNU40

ncbi_submitter: Kyungpook National Univeristy


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhizobium sp. BR 315

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: uncultured Conexibacter sp.


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Bosea sp. LjRoot90

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. LjRoot90


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea: Seoul

ncbi_submitter: Yonsei University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Salmonella sp. NW402

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Petrotogaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Thulasizwe Hopsital

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0059

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC020607

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Klebsiella sp. CB_Kp196

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: rock

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_country: Belarus

ncbi_isolation_source: excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-173


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Enterobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 188 (4-2356988)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 188 (4-2356988)


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Dorea formicigenerans ATCC 27755

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea;s__Dorea formicigenerans;x__Dorea formicigenerans ATCC 27755


ncbi_isolation_source: forest soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Rhodobacterales bacterium UBA3089

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0175

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: feces of segmented filamentous bacteria (SFB)-monocolonized mice

ncbi_strain_identifiers: SFB-mouse-NYU

ncbi_submitter: NYU School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-mouse;x__Candidatus Arthromitus sp. SFB-mouse-NYU


ncbi_assembly_name: freshwater MAG --- A3_bin-243

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Filifactor alocis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC24

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Bryobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Final carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_isolate: metabat2_pooled_hifiasm.901 MAG

ncbi_strain_identifiers: metabat2_pooled_hifiasm.901 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;s__Candidatus Enterousia intestinigallinarum


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Glycomyces lechevalierae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Portugal

ncbi_organism_name: Erythrobacter cryptus DSM 12079


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Chengdu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chengdu Medical College


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Nanjing University


ncbi_organism_name: Atlantibacter subterraneus


ncbi_assembly_name: Rumen uncultured genome RUG13780

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_submitter: University of Florida


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA4676

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4676


ncbi_country: Kuwait

ncbi_isolation_source: wound

ncbi_strain_identifiers: Kuwait C-91

ncbi_submitter: Kuwait University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: Brown University


ncbi_submitter: European Bioinformatics Institute


ncbi_country: Chile

ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Yantai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroidaceae bacterium AM72-11pH9A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Xiamen University


ncbi_country: Tanzania: Moshi

ncbi_isolation_source: meat

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5


ncbi_country: India: Kanpur

ncbi_isolation_source: Food waste compost

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_strain_identifiers: IITK SM1

ncbi_submitter: Indian Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Lebanon

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: clinical

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Pittsburgh


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Aricia artaxerxes


ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Anaerocolumna sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Thailand

ncbi_isolation_source: blood


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: Sewer

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. KE37

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: uncultured Flexibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: duodenum

ncbi_organism_name: Brevibacterium linens

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Egypt

ncbi_isolation_source: gut

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Alexandria University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Pelodictyon sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;x__Chlorobium/Pelodictyon group;g__Pelodictyon;x__environmental samples;s__uncultured Pelodictyon sp.


ncbi_organism_name: Sulfitobacter sp. 1A13191


ncbi_organism_name: Streptomyces sp. NPDC056194

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Arthrobacter koreensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA:San Antonio; TX

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Streptomyces sp. NPDC014748


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Actinotignum sp. GS-2025a

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Micrococcus luteus


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Synechococcus lacustris Tous-12m

ncbi_submitter: University of Warwick


ncbi_country: USA

ncbi_isolation_source: lesion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Tennessee


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-758

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. NBC_01463

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_assembly_name: MAP 5864 version 1

ncbi_country: USA: Iowa

ncbi_submitter: National Animal Disease Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis 10-5864


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_country: Saudi Arabia: Khobar

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imam Abdulrahman bin faisal university


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Laiyang

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium sp. LY3-2

ncbi_submitter: Shandong University


ncbi_organism_name: Salmonella sp. SSDFZ54

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: USA: GA

ncbi_isolation_source: peanut butter

ncbi_submitter: Washington State Department of Health Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southern California


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: OsloMet


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: Vagina of Healthy reproductive Indian woman

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Unique Biotech Limited


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_country: Germany: Berlin

ncbi_isolation_source: conjunctivitis

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Corvallis


ncbi_organism_name: Lentilitoribacter sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_genome_representation: partial

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: IMG-taxon 2634166369 annotated assembly

ncbi_organism_name: Branchiibius hedensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Washington

ncbi_isolation_source: Chinook salmon

ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_strain_identifiers: SC

ncbi_submitter: LNCC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Clostridium sp. DL-VIII

ncbi_strain_identifiers: DL-VIII

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Florida

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: Xinjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: patientC

ncbi_submitter: SC


ncbi_country: Canada

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudolysinimonas kribbensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S086

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S086


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. S1A1-3

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolate: OVUMBEN

ncbi_organism_name: Sedimenticola sp.

ncbi_strain_identifiers: OVUMBEN

ncbi_submitter: University of Vienna


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: USDA-ARS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterobacter soli

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: BGI


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-537-08_S3_C2

ncbi_submitter: IGS


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Neimenggu

ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Nangjing agricultural university


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Qinghai Province

ncbi_organism_name: Cellulomonas wangleii

ncbi_submitter: China CDC


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium sp. 239_CJEI

ncbi_submitter: University of Washington


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Malaysia

ncbi_isolation_source: soy sauce

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: University of Malaya


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: corn spoilage sample

ncbi_organism_name: Geobacillus stearothermophilus ATCC 12980

ncbi_submitter: Yonsei University


ncbi_country: China: Jiangsu

ncbi_isolation_source: catheter

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Segatella copri


ncbi_submitter: Spribille Lab


ncbi_isolate: mixed corals

ncbi_organism_name: Kocuria sp. cx-455

ncbi_strain_identifiers: mixed corals;bgisy196

ncbi_submitter: BGI Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Kocuria sp. cx-455


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Brachymonas denitrificans

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Geopsychrobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Monash University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides eggerthii 1_2_48FAA

ncbi_submitter: Broad Institute


ncbi_country: China: The East China Sea

ncbi_isolation_source: Near bottom seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Acetivibrio sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Minho


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: Punction fluid

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG13368

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1405

ncbi_strain_identifiers: FDAARGOS 1405

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Colorado State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ130605B_bin-466

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: IA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Japan:Tokyo; Tokyo Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfonema ishimotonii

ncbi_strain_identifiers: Tokyo 01

ncbi_submitter: Institute of Low Temperature Science, Hokkaido University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA3597

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA3597


ncbi_organism_name: Haliangiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Portugal: Guilhabreu; District Vila do Conde

ncbi_submitter: Max Rubner-Institut


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABKWT

ncbi_submitter: NHGRI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Finland

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Hong Kong

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: India

ncbi_isolation_source: Mangrove soil and water

ncbi_organism_name: Nocardiopsis sp. EMB25

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_assembly_name: Rumen uncultured genome RUG11098

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_organism_name: Streptomyces sp. NBC_01318

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Saccharibacter floricola DSM 15669

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: Kazakhstan: Chimkent Region; Suzak District; Zhuantobe Townsite

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_country: China: Hebei province

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Instituto Politecnico Nacional


ncbi_country: USA: GA

ncbi_isolation_source: chicken bile

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas Tech University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Beijing

ncbi_isolation_source: chicken

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-25

ncbi_strain_identifiers: Hp P-25

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: sputum specimen

ncbi_organism_name: Haemophilus sp. SZY H8

ncbi_strain_identifiers: SZY H8

ncbi_submitter: The Second Clinic Medical College


ncbi_country: USA: Mystery Bay

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Canada: Havelock; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Burkholderia sp. B21-007

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Colon

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Armatimonadetes bacterium CG2_30_66_41

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium CG2_30_66_41


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Clostridium paraputrificum


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Faculty of Veterinary Sceince, Chulalongkorn University


ncbi_organism_name: Turicibacter bilis

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Treponema denticola

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: uncultured Lishizhenia sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: lake water

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lapidilactobacillus dextrinicus

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia: Kopivnik

ncbi_isolation_source: Apple cider vinegar

ncbi_organism_name: Gluconacetobacter entanii

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Yangzhou City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Madrid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_submitter: Southwest Medical University


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: China:Beijing; Hebei province

ncbi_isolation_source: liver abscess of a 14-year-old boy

ncbi_submitter: Capital Medical University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Clostridium botulinum A

ncbi_submitter: RFBIO


ncbi_country: China

ncbi_isolation_source: cecum

ncbi_submitter: Nanjing agricultural university


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Agua Caliente

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Streptococcus suis 5428

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: Turkey

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Dokuz Eylul University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: Egypt: Tanta

ncbi_submitter: JCVI


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1446

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Research and Innovation Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: environmental

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Planktothrix agardhii G_PLANK

ncbi_submitter: University of Utah


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada

ncbi_submitter: University of Guelph


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nitrospirales bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: coal bed cutting

ncbi_organism_name: Opitutaceae bacterium UBA4094

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-570

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna