ncbi_country: Costa Rica

ncbi_organism_name: Pantoea sp. SoEX

ncbi_strain_identifiers: SoEX

ncbi_submitter: Ohio State University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 983

ncbi_submitter: USDA-ARS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV088

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


gtdb_representative: t

ncbi_organism_name: Tatumella terrea

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Romboutsia sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Mexico: Nayarit

ncbi_organism_name: Vreelandella janggokensis

ncbi_submitter: Universidad Autonoma Metropolitana. Lerma


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Japan: Nagano

ncbi_isolation_source: microbial mat

ncbi_organism_name: Hydrogenophilus thiooxidans

ncbi_submitter: Tokyo Metropolitan University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Slackia sp.


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. XY332

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antioquia


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Breznakibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Papua New Guinea

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: MidWest; broiler breeder farm 11

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Salmonella sp. LSP 417/00

ncbi_submitter: University of Oviedo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kampala International University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Caccoplasma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;x__Bacteroidaceae incertae sedis;g__Candidatus Caccoplasma;x__unclassified Candidatus Caccoplasma;s__Candidatus Caccoplasma sp.


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lysobacter enzymogenes

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universidad de La Rioja


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Burkholderia sp. 22088

ncbi_submitter: Yantai University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Christensenellales bacterium


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A13

ncbi_submitter: Arkin Lab


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Boseongicola sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan: estuary of the Shiira River

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Agromyces luteolus

ncbi_submitter: Huzhou University


ncbi_country: USA: Massachusetts; Petersham

ncbi_isolation_source: see publication for details

ncbi_organism_name: Leifsonia poae

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: China: Jiangsu

ncbi_submitter: Jiangsu Institute of Poultry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 42

ncbi_submitter: Lebanese American University


ncbi_country: Italy: Rome

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3608

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces thermocarboxydovorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG13363

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: V1.0 of Brucella_abortus_bv.1_str_134

ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus bv. 1 str. 134

ncbi_submitter: Beijing Institute of Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 1;x__Brucella abortus bv. 1 str. 134


ncbi_country: Bulgaria

ncbi_organism_name: Brevibacterium ravenspurgense

ncbi_submitter: Quadram Institutte


ncbi_submitter: University of Wyoming


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Tsinghua University


gtdb_type_species_of_genus: t

ncbi_isolation_source: fermented pit clay

ncbi_organism_name: Caproicibacterium amylolyticum

ncbi_submitter: Jiangnan university


ncbi_country: Netherlands


ncbi_isolation_source: Respiratory swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Microbacterium rhizosphaerae

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: south-facing slope of Radio Facility Wash; Furnace Creek; CA

ncbi_isolation_source: gravel soil

ncbi_organism_name: Bacillus spizizenii RFWG1A4

ncbi_submitter: Wesleyan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus spizizenii;x__Bacillus spizizenii RFWG1A4


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Graduate School of Frontier Sciences, University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium angulatum;x__Bifidobacterium angulatum DSM 20098 = JCM 7096


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_country: Japan

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Puerto Rico: Carolina

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. Bp9140

ncbi_submitter: Northern Arizona University


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: University of Washington


ncbi_isolation_source: Caecum


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1381

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: France

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Netherlands: Wageningen

ncbi_isolation_source: artisanal cheese

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Wageningen University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Campylobacter volucris

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Salmonella sp. NW412

ncbi_submitter: Sichuan University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Serratia sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Center for Microbial Communities


ncbi_country: Italy: Napoli

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Cambodia: Phnom Penh

ncbi_submitter: Oita university


ncbi_organism_name: Streptomyces sp. NPDC102351

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Singapore

ncbi_isolation_source: Freshwater reservoir

ncbi_organism_name: Hapalosiphon sp. MRB220

ncbi_submitter: Singapore-MIT Alliance for Research and Technology


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Citrobacter freundii complex sp. CFNIH4

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. CFNIH4


ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: California Department of Public Health


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Bergen


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: MD

ncbi_isolation_source: Pre-chill chicken carcass

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bifidobacterium psychraerophilum

ncbi_submitter: Teagasc


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA17301

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Spain

ncbi_organism_name: Arcobacter cloacae

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWA1_33_30


ncbi_organism_name: Synergistes jonesii

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: USA: Louisville; KY

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Escherichia coli TW07509

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Korea

ncbi_submitter: Yonsei University College of medicine


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: Chlamydia sp Rubis

ncbi_organism_name: Candidatus Rubidus massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: Urine

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Hungary:Budapest; Kiskuns?g National Park

ncbi_isolation_source: Reed periphyton in a shallow soda pond

ncbi_organism_name: Cellulomonas phragmiteti

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Malaysia

ncbi_isolation_source: skin infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: SCAID PHRX1-2019

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_submitter: Max Rubner-Institut


ncbi_country: France: Brittany

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14599

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_organism_name: [Clostridium] hylemonae


ncbi_country: Germany

ncbi_isolation_source: Rabbit

ncbi_organism_name: Klebsiella sp. CVUAS 10191.3

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Panama: Coiba National Park

ncbi_isolation_source: host-associated

ncbi_organism_name: Pseudoalteromonas sp. CO348

ncbi_submitter: INDICASAT AIP


ncbi_strain_identifiers: MG1655 - AZIC

ncbi_submitter: Emory University


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Lentisalinibacter salinarum

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: USA: NY; Ithaca

ncbi_isolation_source: Grass rhizosphere soil

ncbi_organism_name: Ideonella azotifigens

ncbi_strain_identifiers: CCUG 75669T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Aquaticitalea sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: Latilactobacillus curvatus CIRM-BIA2781

ncbi_organism_name: Latilactobacillus curvatus

ncbi_strain_identifiers: Latilactobacillus curvatus CIRM-BIA2781

ncbi_submitter: INRAE


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: France: Besancon

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Jonstorp

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: Uppsala university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Ministry of Agriculture & Rural Development


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: India

ncbi_organism_name: Xanthomonas euvesicatoria pv. physalidis

ncbi_strain_identifiers: NCPPB 1756

ncbi_submitter: University of Exeter

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 135


ncbi_country: Italy

ncbi_isolation_source: Pastries

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Pseudomonas sp. s199

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany: Jena

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Sphaerisporangium flaviroseum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolate: Salmonella Dublin

ncbi_isolation_source: St Nectare Cheese

ncbi_strain_identifiers: Salmonella Dublin

ncbi_submitter: University of Westminster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:r:-


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Subtercola frigoramans


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Paenibacillus sp. 8b26

ncbi_submitter: INRAE


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Pseudomonas edaphica

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phototrophicaceae bacterium


ncbi_organism_name: Spirulinaceae cyanobacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Monash University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Manitoba


ncbi_organism_name: Marinobacter oulmenensis

ncbi_strain_identifiers: CECT 7499

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: Australia: Goolwa; Lake Alexandrina

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-590/01

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Streptomyces sp. NPDC052069

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Amazonas

ncbi_isolation_source: urine

ncbi_submitter: University of Sao Paulo


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Greece

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Microcoleus sp. SVA1_A4

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Australia: Point Lonsdale; Victoria

ncbi_organism_name: Mycobacterium ulcerans

ncbi_submitter: University of Melbourne


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Leptospira kobayashii

ncbi_submitter: Laboratory of Parasitology, Department of Disease Control, Graduate School of Veterinary Medicine, Hokkaido University


ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli KTE181

ncbi_submitter: Broad Institute


ncbi_isolation_source: topsoil

ncbi_organism_name: Clostridiales bacterium UBA3578

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_organism_name: Povalibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Chittagong


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Russia: Tatarstan

ncbi_isolation_source: Plant root

ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: Laboratory of Molecular Genetics and Microbiology Methods


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: feces


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centro Nacional de Biotecnologia-CSIC


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: Auburn University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: bacterium

ncbi_submitter: Northeastern University


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Belgium

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM32

ncbi_submitter: IGS


ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_submitter: Uppsala University


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Aliiroseovarius sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Yunfu; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_country: Bangladesh

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: USA: Shelter Island; NY

ncbi_isolation_source: tick

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_strain_identifiers: C1398 mutant C2

ncbi_submitter: Peking University People's hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Taiwan: Hsinchu County

ncbi_isolation_source: fermented mustard products

ncbi_organism_name: Companilactobacillus suantsaicola

ncbi_submitter: Food Industry Research and Development Institute


ncbi_organism_name: Niastella sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus sp. AFS051223

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS051223


ncbi_isolation_source: bioreactor

ncbi_organism_name: Synergistaceae bacterium UBA5551

ncbi_submitter: University of Queensland


ncbi_organism_name: Aeromonas sp. R2-4

ncbi_submitter: Hangzhou CDC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M66661

ncbi_submitter: Broad Institute


ncbi_organism_name: Syntrophobacteria bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Germany: Kiel

ncbi_isolation_source: Supermarket

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: China: Shenzhen

ncbi_isolation_source: seawater

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_strain_identifiers: SOCE 002

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_country: South Africa

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Salmonella sp. NW625

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Segatella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 6

ncbi_submitter: University of Siena


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: NDB

ncbi_submitter: ningbo university


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Streptomyces sp. NPDC057580

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nonomuraea sp. KM90

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Bacteroides uniformis


ncbi_isolate: SPRUCE 414

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_strain_identifiers: SPRUCE 414

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: China: Rice field; Hongan

ncbi_isolation_source: sediment

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-06558

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: skin infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Haemophilus influenzae 2019

ncbi_submitter: The Research Institute at Nationwide Children's Hospital and The Ohio State University, Department of Microbiology and DNA Facility, The University of Iowa, Carver College of Medicine and State


ncbi_isolation_source: marine water

ncbi_organism_name: Planktomarina temperata

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: USA: Pensacola Municipal Beach; FL

ncbi_isolation_source: beach sand contaminated with Macondo oil

ncbi_organism_name: Candidatus Macondimonas diazotrophica


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_submitter: Harvard University


ncbi_assembly_name: IMG-taxon 2700988729 annotated assembly

ncbi_organism_name: Flavobacterium flevense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: China: Henan

ncbi_isolation_source: sputum

ncbi_submitter: Peking University People's Hospital


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Mycobacterium tuberculosis TB_RSA155

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: Pseudomonas sp. CAM1A

ncbi_submitter: University of Bremen


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Yan an

ncbi_organism_name: Kaistella yananensis

ncbi_submitter: Yan'an University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Pasture

ncbi_organism_name: Weissella cibaria

ncbi_strain_identifiers: 1MSE W25;D-H

ncbi_submitter: Federal University of Vicosa


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Neomicrothrix parvicella RN1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;s__Candidatus Neomicrothrix parvicella;x__Candidatus Neomicrothrix parvicella RN1


ncbi_country: South Korea: Uljin County

ncbi_isolation_source: marine sponge inhabited in seawater

ncbi_organism_name: Kiloniella spongiae

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_submitter: EMG


ncbi_country: Colombia: Cartagena

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AM51-7

ncbi_submitter: BGI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Marinovum algicola


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0804

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: Harvard University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces recifensis

ncbi_strain_identifiers: NRRL B-3811

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_submitter: Uppsala University


ncbi_country: Ireland

ncbi_isolation_source: Supermarket/Wild rocket

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1188188

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lysobacterales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Faecalibacterium sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: LS

ncbi_isolate: LS

ncbi_organism_name: Candidatus Frankia nodulisporulans

ncbi_strain_identifiers: LS

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_assembly_name: freshwater MAG --- Loc090402-8-9m_bin-1120

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: patients with intra-amniotic infection and premature labor

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Vaginal Microbiome Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: cloacal content

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Mexico: Cuernavaca Morelos

ncbi_isolation_source: nodules

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_country: Thailand

ncbi_isolation_source: seafood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Prince of Songkla University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M090S1SP2A07QC

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Nanyang Technological University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_name: MB3601_COMBINED annotated

ncbi_country: France

ncbi_isolation_source: animal organ

ncbi_submitter: INRA Tours

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Salmonella sp. NW590

ncbi_submitter: Sichuan University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_assembly_name: freshwater MAG --- Loc080925-4m_bin-0811

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Sorangium sp. So ce307

ncbi_strain_identifiers: So ce307

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce307


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_submitter: EMG


ncbi_organism_name: Flintibacter porci

ncbi_submitter: Shandong University


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: uncultured Comamonadaceae bacterium


ncbi_isolate: AOP5_CZ1_surf _bin _20

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP5_CZ1_surf _bin _20

ncbi_submitter: Genoscope


ncbi_isolation_source: marine

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp13 AA74

ncbi_isolation_source: meadow soil

ncbi_strain_identifiers: gp13 AA74

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Luzhou city; Sichuan province

ncbi_isolation_source: Pit mud

ncbi_organism_name: Lentilactobacillus laojiaonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: WA

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_submitter: Center for Comparative Genomics and Evolutionary Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;x__unclassified Rickettsiales;s__Rickettsiales endosymbiont of Stachyamoeba lipophora


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoplanes serenus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water sample

ncbi_organism_name: Synechococcus sp. WH 8020

ncbi_submitter: University of Rhode Island


ncbi_country: USA: Maryland

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M70073

ncbi_submitter: Broad Institute


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Tasmania

ncbi_isolation_source: beef meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tasmania


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Stenotrophomonas sp. S48

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Aalborg University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: SCOPE


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Syria

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Synechococcus sp. SB0668_bin_15

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: France: Limoges

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_organism_name: bacterium


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroides fragilis HMW 610

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis HMW 610


ncbi_country: USA: IL

ncbi_isolation_source: Organic Soy Powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_country: Brazil

ncbi_isolation_source: alveolar bronchial lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Escherichia coli

ncbi_submitter: SINTEF Industry


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Psychrobacter glaciei

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Limnobacter sp.


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Enhydrobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nocardia sp. CA-290969

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: India: Puttaparthi

ncbi_isolation_source: Corneal scrapings

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_organism_name: uncultured Bordetella sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom:Northern Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Maastricht University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Blood

ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nonomuraea sp.

ncbi_submitter: Zhejiang University


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Prevotella koreensis

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ferrigenium sp. UT4

ncbi_submitter: Ehime University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Ferrigenium sp. UT4


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP39_D1_surf _bin _14

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP39_D1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Mississippi Medical Center


ncbi_organism_name: Streptomyces sp. NPDC058876


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2345

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Rowley; Massachusetts

ncbi_isolation_source: untreated salt marsh sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Serratia marcescens


ncbi_country: USA: VA

ncbi_isolation_source: Seaweed; Enteromorpha linza (coastal marine sediments); Aburatsubo Inlet; Australia

ncbi_organism_name: Roseobacter denitrificans

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Porticoccaceae bacterium UBA4026

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Mycolicibacterium phlei DSM 43072

ncbi_submitter: Uppasala Univeristy & Jawaharlal Nehru University


ncbi_country: Brazil: Parana

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira santarosai serovar Grippotyphosa

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Marinifilum flexuosum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: Crohn s disease patient gut tissue biopsy

ncbi_submitter: University of Toronto


ncbi_organism_name: Bacillus anthracis str. A0465

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. A0465


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: USA

ncbi_isolation_source: animal tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: WSLC 1020

ncbi_submitter: ETH Zurich


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: France

ncbi_isolation_source: Tracheal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Bangladesh

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: Greece

ncbi_isolation_source: wound

ncbi_submitter: bioMerieux


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Michigan

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Michigan


ncbi_assembly_name: Rumen uncultured genome RUG153

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: non

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Beijing Union University


ncbi_organism_name: Enterobacter sp.


ncbi_country: Spain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Portugal:  Plo Negro ; diving spot near Leixes Harbour

ncbi_isolation_source: subtidal sample; epilithic (10-13m depth); less than 1 km off the shore

ncbi_organism_name: Leptolyngbya cf. ectocarpi LEGE 11479

ncbi_submitter: CIIMAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Leptolyngbyales;f__Leptolyngbyaceae;x__Leptolyngbya group;g__Leptolyngbya;s__Leptolyngbya ectocarpi;x__Leptolyngbya cf. ectocarpi LEGE 11479


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Myxococcales bacterium UBA1532

ncbi_submitter: University of Queensland


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 121

ncbi_submitter: INRA STLO


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Aeromonas sp. DNRA1

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: Clinica Universitaria de Navarra (Navarra)

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: Logan River

ncbi_organism_name: Nitrospira sp. UBA6488


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: bacterium UBP2_UBA2255

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP2_UBA2255


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Experimental Botanical Garden Goettingen

ncbi_isolation_source: compost soil

ncbi_organism_name: Pseudomonas sp. ACN5

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Tannerellaceae bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Enterococcus sp. AZ137

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: Switzerland: Basel

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Amarobacter glycogenicus

ncbi_submitter: Aalborg University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: Doenjang

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 3031

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Brazil: RJ

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: FIOCRUZ


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium RIFOXYB1_FULL_33_15


ncbi_organism_name: Rothia dentocariosa


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Shandong university


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of California, Berkeley


ncbi_country: Australia

ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of New South Wales


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Fimbriiglobus sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: China: Guangzhou

ncbi_isolation_source: lake water

ncbi_organism_name: Vogesella mureinivorans

ncbi_submitter: The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China


ncbi_isolation_source: blood

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 131 (358a)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 131 (358a)


ncbi_country: Oman

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_country: Ireland: Sligo

ncbi_isolation_source: Irish Farm

ncbi_organism_name: Mannheimia varigena

ncbi_strain_identifiers: Teagasc 1

ncbi_submitter: Teagasc


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Rhizobium giardinii

ncbi_strain_identifiers: CAS 24

ncbi_submitter: UMCS


ncbi_organism_name: uncultured Dialister sp.


ncbi_country: USA: Utah

ncbi_organism_name: Francisella tularensis

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: Niameyia massiliensis

ncbi_organism_name: Niameybacter massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: gut

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Lactobacillus acetotolerans


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean: Andaman

ncbi_isolation_source: Eggs carried on pleopods

ncbi_organism_name: Vibrio panuliri

ncbi_strain_identifiers: CAIM 1902

ncbi_submitter: CIAD, A.C.


ncbi_country: Italy: southern Alps; Lake Garda

ncbi_isolation_source: Epilimnion

ncbi_organism_name: Tychonema bourrellyi B0820

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Thermoactinomyces vulgaris

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_country: USA: Little Rock; AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Flavobacterium sp. WC2416

ncbi_submitter: Wellesley College


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University