ncbi_assembly_name: Rumen uncultured genome RUG10354

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


gtdb_representative: t

ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Germany: Sulfidic spring near Regensburg

ncbi_isolation_source: biofilm from sulfidic groundwater

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Escherichia coli

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Victivallaceae bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Streptomyces ipomoeae

ncbi_submitter: USDA Agricultural Research Service


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Japan: Nakabusa Onsen; Nagano Prefecture

ncbi_isolation_source: sulfidic hot spring

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Jarinu; Sao Paulo

ncbi_isolation_source: Plant xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Photobacterium gaetbulicola Gung47

ncbi_submitter: National Fisheries Research and Development Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Distal colon


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Madagascar

ncbi_isolate: Mycobacterium tuberculosis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: TX

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1095

ncbi_submitter: Broad Institute


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Mycobacteroides abscessus 3A-0122-S

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Lssk

ncbi_submitter: University of Georgia


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus 11S01586


ncbi_organism_name: Priestia sp. YIM B13551

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13551


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacter muris


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: cacao been fermentation

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: ETH Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Salmonella sp. 5694

ncbi_submitter: Zhejiang university


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Sphingomonadaceae bacterium PASS1

ncbi_submitter: CNRS-AMU


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0045

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-005-03_S1_C3

ncbi_submitter: IGS


ncbi_country: China: Hunan

ncbi_organism_name: Dickeya oryzae

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,CAAS


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12436

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Muribaculum intestinale


ncbi_country: China: Shenzhen Children s Hospital

ncbi_submitter: ShenZhen Children's Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_type_species_of_genus: t

ncbi_country: Germany: Bonn

ncbi_organism_name: Desmospora activa DSM 45169

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Thermoactinomycetaceae;g__Desmospora;s__Desmospora activa;x__Desmospora activa DSM 45169


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_organism_name: Thermodesulfitimonas autotrophica

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli GSK2023

ncbi_submitter: GlaxoSmithKline


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: EMG


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_isolation_source: Tissues

ncbi_organism_name: Staphylococcus aureus 10S00488

ncbi_submitter: Broad Institute


ncbi_country: Morocco: Merzouga

ncbi_isolation_source: desert sand

ncbi_organism_name: Paenibacillus sp. MDMC362

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Washington


ncbi_assembly_name: IMG-taxon 2700988706 annotated assembly

ncbi_organism_name: Roseovarius pacificus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: cervical abscess

ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: CSUF


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648901 1-17


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Healthy woman; from sebeceous gland on nose

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Salmonella sp. NW999

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Bar Harbor; ME MDIBL

ncbi_organism_name: Pseudoalteromonas carrageenovora

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Occultella aeris

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Bangladesh

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Cardiff University


ncbi_organism_name: Edaphobacter dinghuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Paracidovorax anthurii

ncbi_strain_identifiers: CFPB 3232

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_organism_name: Helicobacter winghamensis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Actinobacteria bacterium UBA2184

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA2184


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Arthrobacter sp. SAFR-014

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_isolation_source: burned soil

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolate: AOP43_D1_surf _bin _1

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP43_D1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Hungatella sp.


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-0558

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: New York City

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: miscellaneous body fluid

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Flavobacterium anhuiense

ncbi_submitter: Pearl River Fisheries Research Institute (PRFRI) of Chinese Academy of Fishery Sciences


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: South Korea

ncbi_isolation_source: cecum

ncbi_organism_name: Faecalicatena fissicatena

ncbi_submitter: Seoul National University


ncbi_country: Austria

ncbi_isolation_source: trachea

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Ancylomarina subtilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paraclostridium sordellii


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: France

ncbi_isolation_source: plant tissue showing soft rot symptoms

ncbi_organism_name: Dickeya solani

ncbi_submitter: INRA Unite de Recherche en Biotechnologie


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Denmark

ncbi_isolation_source: larvae

ncbi_strain_identifiers: BGSC 4BR1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar poloniensis


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Hungary

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Enviroinvest Corp.


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Respiratory tract secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Deinococcus aquaticus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Lactimicrobium massiliense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Agathobacter rectalis


ncbi_country: Brazil: Amazon State

ncbi_isolation_source: Water Lake

ncbi_organism_name: Aquitalea sp. LB_tupeE

ncbi_submitter: Federal University of Amazonas


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Soil under chromium-containing slag heap

ncbi_organism_name: Pannonibacter phragmitetus BB

ncbi_strain_identifiers: BB

ncbi_submitter: Central South University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Japan

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Yonsei University


ncbi_country: Switzerland

ncbi_isolation_source: goat milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Agroscope


ncbi_country: Russia: Republic of Karelia

ncbi_isolation_source: Fresh vegetable salad with canned vegetables and seasoned pickled mushrooms

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Gui Zhou

ncbi_isolation_source: Cave soil

ncbi_organism_name: Lysinibacillus cavernae

ncbi_strain_identifiers: SYSU K30005

ncbi_submitter: Guizhou Medical University


ncbi_submitter: Toho University


ncbi_organism_name: Bacteroides congonensis


ncbi_country: Spain

ncbi_isolation_source: cheese

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: UCM


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Toombs Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Aerococcus tenax

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Desemzia sp. FAM 24101

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Desemzia;x__unclassified Desemzia;s__Desemzia sp. FAM 24101


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Australia: Sydney

ncbi_isolation_source: Perineum

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Richelia sp. RM2_1_2

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: Argentina

ncbi_isolation_source: Screening

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: USA: Ellis Island; Alton; MO

ncbi_isolation_source: wetland soil

ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Washington University in St Louis


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Northwestern University


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_submitter: SAHMRI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Jukskei River

ncbi_isolation_source: water

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-236

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4bV str. LS644


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Salinispirillum marinum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phormidesmis sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Glutamicibacter mysorens

ncbi_submitter: Hanoi University of Science and Technology


ncbi_organism_name: uncultured Phycisphaera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Guyparkeria sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Malikia spinosa

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: deli meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: soil

ncbi_organism_name: Galbitalea soli

ncbi_submitter: Hebei North University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2615840634 annotated assembly

ncbi_organism_name: Paenibacillus sp. yr247

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Photorhabdus sp. RM71S

ncbi_submitter: University of Neuchatel


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Denmark: Zealand

ncbi_isolation_source: potato

ncbi_organism_name: Serratia inhibens

ncbi_submitter: University of Copenhagen


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Immundisolibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Empedobacter stercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Czech Republic: Prerov

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. HMT-348_TM7c-JB


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Colombia: Barranquilla

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_submitter: University of Tartu


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: A*STAR


ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_submitter: University of Sao Paulo


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Germany

ncbi_isolation_source: poultry meat

ncbi_organism_name: Photobacterium iliopiscarium

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Polycyclovorans sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: SEMIA 586

ncbi_submitter: Embrapa Soja


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Enterobacter Cloacae ENM-19


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: CAU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Ningbo

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transcending colon aspirate

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of New Hampshire


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: USA: New York City

ncbi_isolation_source: urine straight catheter

ncbi_submitter: Columbia University Medical Center


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Brucella melitensis 02-5863-1

ncbi_submitter: Broad Institute


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Campylobacter avium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qinghai-Tibetan Plateau

ncbi_isolation_source: subterrestrial sediment

ncbi_organism_name: Qipengyuania sediminis

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Geobacter sulfurreducens

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces sp. NPDC039028

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Hospital La Paz


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Streptomyces californicus


ncbi_organism_name: Streptomyces sp. NPDC088252


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Bacillota bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: lake water

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: uncultured Legionella sp.


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Jiangxi

ncbi_isolation_source: physical

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_organism_name: Terracidiphilus sp.


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_organism_name: Brachyspira murdochii

ncbi_submitter: University of Southampton


ncbi_assembly_name: IMG-taxon 2617270881 annotated assembly

ncbi_organism_name: Alloyangia pacifica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 84

ncbi_submitter: Oregon State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Pseudoflavonifractor phocaeensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: EMG


ncbi_organism_name: Coprococcus sp.


ncbi_country: USA: Alachua County; Florida

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhengzhou

ncbi_isolation_source: sputum

ncbi_submitter: ZhengZhou University


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2841

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10461

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk filter

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIRO


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Atlantic Ocean

ncbi_isolation_source: pentadecane enrichment inoculated with seawater

ncbi_organism_name: Maricaulis maris

ncbi_submitter: University of Califronia


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinobacter sp.


ncbi_organism_name: Serratia grimesii

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Chicago


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Ontario

ncbi_isolation_source: Human- mung bean-Outbreak

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110223


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Brazil

ncbi_isolation_source: Meat

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Guangdong

ncbi_isolation_source: Hai Zhu Lake

ncbi_organism_name: Fastidiosibacter lacustris

ncbi_submitter: Tradictional Chinese medicine Univeisity of Guangzhou


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Streptomyces sp. NPDC006288

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_assembly_name: PSU Rhodopseudomonas palustris

ncbi_organism_name: Rhodopseudomonas sp. P1

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA

ncbi_submitter: University of Michigan


ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Qinghai-Tibet Plateau; Shaanxi

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. 135

ncbi_submitter: Northwest A&F University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: Institut Pasteur


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: USA:Florida; Stan Blum Boat Ramp

ncbi_organism_name: Micromonospora sp. WMMA1949

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_isolate: Patient #40

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #40

ncbi_submitter: sapienza university


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Shanxi

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_isolation_source: Blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: Australia: Queensland

ncbi_isolation_source: Prawn digestive tract

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Macquarie University


ncbi_organism_name: Paenibacillus polymyxa SQR-21

ncbi_submitter: Nanjing Agricultrual University


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Low respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Enterobacter sp. Lyrl_3

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Firmicutes bacterium i23-0019-B6

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium i23-0019-B6


ncbi_organism_name: Acetobacter okinawensis

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Maribacter sp.

ncbi_submitter: BiOSSE


ncbi_organism_name: Salmonella sp. 741265131_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_submitter: Universidad de Leon


ncbi_organism_name: Methylobacterium sp. PvP112

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Poriferisodalaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Surrey


ncbi_organism_name: Iamia sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Nonomuraea endophytica


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Vibrio coralliirubri

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea: Seoul

ncbi_isolation_source: air conditioner

ncbi_organism_name: Piscinibacter koreensis

ncbi_submitter: Sangji University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_country: Sweden

ncbi_isolation_source: lung

ncbi_organism_name: Lactobacillus psittaci DSM 15354

ncbi_submitter: Shanghai Majorbio


ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes subsp. acnes

ncbi_submitter: Aarhus University


ncbi_country: USA: Georgia

ncbi_organism_name: Streptococcus pneumoniae GA47388

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Champaign; IL

ncbi_isolation_source: Upturned soil from a suburban backyard

ncbi_organism_name: Pseudomonas sp. LF19

ncbi_submitter: Illinois Wesleyan University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Ireland

ncbi_isolation_source: hospital pen floor

ncbi_organism_name: Acinetobacter sp. RF15B

ncbi_submitter: University College Dublin


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Myxococcales bacterium


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Slovenia

ncbi_isolation_source: Burn smear

ncbi_organism_name: Bacillus mobilis

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_49_11


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Olegusella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Germany

ncbi_strain_identifiers: Allgaeu

ncbi_submitter: Ludwig-Maximilians-University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant caprae


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: Strawberry

ncbi_organism_name: Gluconobacter kondonii

ncbi_strain_identifiers: NBRC 3266

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: Hospital Infection (undetermined)

ncbi_organism_name: Enterococcus faecalis EnGen0062

ncbi_submitter: Broad Institute


ncbi_isolation_source: blood

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: retail turkey

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Tulsa


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guangzhou

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine metagenome


ncbi_country: USA: New York State

ncbi_isolation_source: Black Creek Park

ncbi_organism_name: Enterobacteriaceae bacterium RIT692

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB8_3_299

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Nadym region of northwest Siberia; Yamalo-Nenets AO

ncbi_isolation_source: pine forest

ncbi_organism_name: Acidisarcina polymorpha

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea-ice

ncbi_organism_name: Algoriphagus ratkowskyi

ncbi_submitter: University of Tasmania


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__environmental samples;s__uncultured Poribacteria bacterium


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Tracheal secret.

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: sea sand

ncbi_organism_name: Subsaxibacter sp. CAU 1640

ncbi_submitter: Chung-Ang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Subsaxibacter;x__unclassified Subsaxibacter;s__Subsaxibacter sp. CAU 1640


ncbi_submitter: MRSN BI Team


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 3220

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_country: Qatar

ncbi_isolation_source: Sand from a barchan sand dune

ncbi_organism_name: Sporosarcina koreensis

ncbi_submitter: Cornell University


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter sp. zg-Y916

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_organism_name: Pseudomonas laurylsulfatiphila

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil: Buzios; Rio de Janeiro

ncbi_isolation_source: Millepora alcicornis

ncbi_organism_name: Cobetia sp. LC6

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Novosphingobium sp. MBES04

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Gippsland Lakes

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-567/02-A1

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Mannheimia haemolytica PHL213

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: JiangSu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Brazil

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_strain_identifiers: ICMP 4466

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_isolation_source: nasopharynx


ncbi_country: USA: New York

ncbi_isolation_source: bone

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: USA: Seattle

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Vibrio nigripulchritudo BLFn1

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus LAMC6094


ncbi_country: Dominican Republic: Santo Domingo

ncbi_isolation_source: Ozama River

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Instituto Tecnologico de Santo Dominigo (INTEC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: France

ncbi_isolation_source: Pods

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Home

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: burned soil

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Taiwan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR4b

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: addis ababa university


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Teat swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Nocardioides sp.


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Curvibacter sp.


ncbi_organism_name: uncultured Candidatus Cloacimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__environmental samples;s__uncultured Candidatus Cloacimonas sp.


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Lysinibacillus sp. IITD104

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_isolation_source: swine

ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cubana;x__Salmonella enterica subsp. enterica serovar Cubana str. 76814


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Jeonbuk National University


ncbi_country: China: Liaoning

ncbi_isolation_source: pork from market

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Citromicrobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: metabat2_coassembly_bwa.340 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.340 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Gambia

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: RWTH Aachen University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus;s__Coprococcus hominis (ex Arizal et al. 2022)


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human eye

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NATIONAL FOOD INSTITUTE - DTU


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Caldisericum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Enterenecus avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Enterenecus;s__Candidatus Enterenecus avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Enterenecus;s__Candidatus Enterenecus avicola


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Rhizobium bangladeshense

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Shizuishan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Glutamicibacter creatinolyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand: Trang

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Rhizobium sp. BR 250

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Switzerland

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-P19

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- VK3_bin-0892

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SJOS6001

ncbi_submitter: Broad Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: South Korea: Busan

ncbi_isolation_source: freshwater stream sediment

ncbi_organism_name: Flavobacterium resistens

ncbi_submitter: Lycoming College


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk filter

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIRO


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: soft tissue

ncbi_submitter: SC


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Thailand

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Hong Kong

ncbi_isolation_source: nasal swab

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: France

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Burkholderia sp. BE17

ncbi_submitter: University of Reims


ncbi_country: Senegal

ncbi_organism_name: Ehrlichia ruminantium

ncbi_strain_identifiers: Senegal virulent

ncbi_submitter: CIRAD


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Beijing

ncbi_isolation_source: Tracheal lavage

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China Agricultural University


ncbi_organism_name: Granulicella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG552

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Gambia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: uncultured Sediminibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6412

ncbi_submitter: University of the Basque Country


ncbi_country: China

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Ocean University of China


ncbi_country: South Korea: Jeongeup-si

ncbi_isolation_source: soil of a rice field

ncbi_organism_name: Deinococcus soli (ex Cha et al. 2016)

ncbi_submitter: Seoul Women's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus;s__Deinococcus soli (ex Cha et al. 2016)


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Smithella sp.


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Dorea longicatena

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Peterkaempfera bronchialis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridiaceae bacterium AM72-11pH10A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: EMG


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 50:b:z6


ncbi_country: USA: New York

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: Poland

ncbi_organism_name: Providencia sp. wls1938

ncbi_submitter: NanKai universit


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Nasobronchial lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_country: Malaysia: Kuala Lumpur

ncbi_organism_name: Apibacter adventoris

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: INRAE


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Ngtc RS 1

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pseudoroseicyclus aestuarii

ncbi_strain_identifiers: CECT 9025

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: hands

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Spain: Madrid

ncbi_isolation_source: human milk

ncbi_organism_name: Lactobacillus gasseri CECT 5714

ncbi_strain_identifiers: CECT 5714

ncbi_submitter: Era7 Bioinformatics


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrlo

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Acetobacter persici

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mali

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Israel

ncbi_isolation_source: Botrylloides leachi in torpor state

ncbi_organism_name: Endozoicomonas sp. (ex Botrylloides leachii)

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Acinetobacter baumannii 26016_9

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Explogen LLC


ncbi_isolation_source: egg fresh shelled

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 638970-15


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A24

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Yaoli; Jiangxi Province

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: culture collection deposit

ncbi_organism_name: Streptomyces clavuligerus

ncbi_strain_identifiers: DSM 738

ncbi_submitter: John Innes Centre


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: CFSAN


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Stool

ncbi_organism_name: Halobacillus ihumii

ncbi_submitter: URMITE


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Streptomyces xinghaiensis

ncbi_submitter: Ningxia University


ncbi_organism_name: Acinetobacter johnsonii


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: SPUTUM

ncbi_organism_name: Klebsiella pneumoniae BIDMC 69

ncbi_strain_identifiers: BIDMC 69

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 69


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Denmark

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Nocardioides marmoribigeumensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Loyola University Chicago


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 467

ncbi_submitter: SC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Salmonella sp. NW1096

ncbi_submitter: Sichuan University


ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces mordarskii

ncbi_submitter: McMaster University