ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Flavobacteriales bacterium UBA3376

ncbi_submitter: University of Queensland


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Micromonospora sp. NPDC049274

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: Seoul National University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Chile

ncbi_isolation_source: pulp mill wasterwater

ncbi_organism_name: Alcaligenaceae bacterium SAGV5

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_country: United Kingdom: Aberdeen

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Halothiobacillus sp. 13-55-115


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-L2

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Ponticoccus sp. SC2-35

ncbi_submitter: Shantou University


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: stone

ncbi_organism_name: Hymenobacter sp. H14-R3

ncbi_submitter: Yildiz Technical University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Streptomyces sp. NPDC048638

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:62

ncbi_submitter: DTU


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bournemouth University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Peribacillus loiseleuriae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea

ncbi_organism_name: Virgibacillus halodenitrificans 1806

ncbi_submitter: KRIBB


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Microbacterium luteolum

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Yersinia alsatica

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA4355


ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T13128

ncbi_submitter: Broad Institute


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Agroscope


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Galway


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Japan: Nakabusa Onsen; Nagano Prefecture

ncbi_isolation_source: alkaline; sulfidic hot spring Cone Pool 2

ncbi_organism_name: Phototrophicales bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0729


ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_isolation_source: QCRA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: URMITE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Lebanon

ncbi_isolation_source: Labneh

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: DTU


ncbi_assembly_level: Chromosome

ncbi_country: Japan: Niigata

ncbi_isolation_source: curette

ncbi_organism_name: Eubacterium minutum ATCC 700079

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__[Eubacterium] minutum;x__Eubacterium minutum ATCC 700079


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces sp. NPDC039016

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Belgium: Louvain-la-Neuve

ncbi_isolation_source: rabbit feces

ncbi_organism_name: Clostridium autoethanogenum DSM 10061

ncbi_submitter: JLU


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Universidad de Leon


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Hainan Medical University


ncbi_isolation_source: ascites

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Microbiology, Tokyo Metropolitan Institute of Public Health


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylovulum sp.

ncbi_submitter: University of Waterloo


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium sp. N502540

ncbi_submitter: Jeju National University


ncbi_country: Japan

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: pharmaceutical preparation

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 1107

ncbi_submitter: Brigham Young University


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas syringae pv. lapsa

ncbi_submitter: Chinese Academy of Inspection and Quarantine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. lapsa


ncbi_country: USA: FL

ncbi_isolation_source: feces calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: USA: Oak Ridge National Lab East Fork Poplar Creek (EFPC) study site

ncbi_isolation_source: sediment from a natural stream that has been contaminated with Hg from upstream sources

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2690315658 annotated assembly

ncbi_organism_name: Agromyces sp. CF514

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cyanobium sp. H1_MAG_00036

ncbi_submitter: University of Montreal


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Helicobacter acinonychis

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Brazil

ncbi_isolation_source: Infected plant

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: China University of Geosciences


ncbi_country: Canada: Saint-Jean sur Richelieu

ncbi_isolation_source: infected lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: China: Ningbo

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_isolation_source: sturter culture Biostart RP 100

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium RIFCSPLOWO2_01_FULL_34_15


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Streptomyces capillispiralis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: not provided

ncbi_organism_name: Hoylesella pleuritidis

ncbi_submitter: EMG


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Aeromonas sanarellii

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: uncultured Ohtaekwangia sp.


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Eubacteriales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly


ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Quanzhou Normal University


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: bacterium

ncbi_submitter: SAHMRI


ncbi_organism_name: Enterobacter cloacae complex sp. 298G2

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 298G2


ncbi_assembly_name: Rumen uncultured genome RUG14258

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWE1_36_71


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: nasopharynx

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Maledivibacter sp.

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 45

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: CIM:MAG 45

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Roseburia inulinivorans


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Peru

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: university of Ghent


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: Demequina sp. NBRC 110055

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Oropsylla silantiewi

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium GWA2_54_12


ncbi_country: Russia: Moscow

ncbi_isolation_source: nasopharyngeal swab

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: India: Burabazar; Shillong; Meghalaya

ncbi_isolation_source: beef

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA

ncbi_submitter: CDC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Parcubacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_organism_name: Chloroflexi bacterium RBG_13_51_18

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium RBG_13_51_18


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 1-5 micron

ncbi_organism_name: Vibrio sp. F13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: South China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: BD-LB

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ghana: Navrongo site 3

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces youssoufiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG13345

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus halitosis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Japan

ncbi_isolation_source: Cabbage kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: bioMerieux


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22527;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Malaysia

ncbi_isolation_source: PLEURAL FLUID

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1524

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridium neonatale

ncbi_submitter: University of Paris


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_organism_name: Cyanobacteria bacterium J06636_16

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06636_16


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus group sp. BC29

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC29


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Odoribacter laneus


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Microbacterium paludicola

ncbi_strain_identifiers: 179-B NCA NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Thiotrichales bacterium


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: delta Pf1

ncbi_submitter: Fudan University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Methylibium sp.


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0693

ncbi_submitter: Broad Institute


ncbi_country: India

ncbi_isolation_source: water body

ncbi_organism_name: Rhizobium sp. AQ_MP

ncbi_submitter: CSIR-National Environmental Engineering Research Institute (NEERI)


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Omnitrophica WOR_2 bacterium GWF2_63_9

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium GWF2_63_9


ncbi_country: United Kingdom

ncbi_submitter: University of Oxford


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Salmonella sp. 741265057_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC 51962


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_organism_name: Citrobacter sp. Cb220

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: University of York


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01961

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_genome_category: derived from single cell

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 54 year old woman who was hospitalized in ICU

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: China

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_country: Hungary

ncbi_isolation_source: lung

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Azonexus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_country: Mexico

ncbi_submitter: Pathogen Sequencing Unit, Wellcome Trust Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi;x__Salmonella enterica subsp. enterica serovar Typhi str. E98-3139


ncbi_country: South Korea

ncbi_isolation_source: soil from ginseng field

ncbi_organism_name: Stenotrophomonas ginsengisoli

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Taiwan

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Chung Cheng University


ncbi_country: Hong Kong: Kiu Tsui Chau

ncbi_organism_name: Ruegeria sp. HKCCD4318-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: Kyung Hee university


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Roseobacter sp. HKCCD7386


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: grape vinegar

ncbi_organism_name: Komagataeibacter europaeus

ncbi_strain_identifiers: CECT 8546

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: USA: NC

ncbi_organism_name: Bacillus sp. AFS029637

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS029637


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Porphyromonadaceae bacterium UBA7222


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China

ncbi_isolation_source: laboratory

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Science College, Shantou University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Fuzhou

ncbi_isolation_source: environmental wastewater

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: lake water

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province


ncbi_country: France: Lille

ncbi_isolation_source: bronchial

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Italy: coast of Elba; mediterranean Sea

ncbi_isolation_source: Elba SIP enrichment timepoint T2

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG13932

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Shanxi Agricultural University


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Methylorubrum suomiense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Dialister hominis


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Shewanella baltica


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: bacterium UBP5_UBA1559

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP5_UBA1559


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Newby Island Compost; Milpitas; CA

ncbi_isolation_source: Ionic-liquid pretreated feedstock adapted compost from compost facility

ncbi_organism_name: Chlorobi bacterium NICIL-2

ncbi_submitter: Lawrence Berkeley National Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobi bacterium NICIL-2


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Zurich


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Microbulbifer sp. SA54

ncbi_submitter: Shandong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Mameliella sp. MMSF_3552

ncbi_submitter: The University of Melbourne


ncbi_country: Australia

ncbi_isolation_source: dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: FRR B 2965

ncbi_submitter: Queensland Health


ncbi_organism_name: Hyphomonas neptunium ATCC 15444

ncbi_submitter: TIGR


gtdb_type_species_of_genus: t

ncbi_organism_name: Ralstonia pickettii NBRC 102503

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Sneathia vaginalis

ncbi_submitter: Wayne State University


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Israel

ncbi_isolation_source: cowshed

ncbi_submitter: Heriot-Watt University


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_assembly_name: freshwater MAG --- T7-022_bin-548

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Norway

ncbi_isolation_source: Bivalve mollusc

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_country: Poland

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Oceanidesulfovibrio sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA5678

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA5678


ncbi_organism_name: Microcoleus sp. Pol17C6

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Shanghai General Hospital


ncbi_assembly_name: Rumen uncultured genome RUG11069

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil:Minas Gerais; Belo Horizonte

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Munster

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas sp. MYb115

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Segatella buccae


ncbi_organism_name: Subdoligranulum variabile


ncbi_organism_name: Alloscardovia omnicolens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood of Japanese macaque (Macaca fuscata)

ncbi_organism_name: Bartonella quintana

ncbi_submitter: Nihon University


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Siena College


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPC 22

ncbi_submitter: TLVMC


ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Yellowstone National Park; GGS063 Spring

ncbi_isolate: Bin S7

ncbi_isolation_source: Sediments from shelf

ncbi_organism_name: Candidatus Caldipriscus sp.

ncbi_strain_identifiers: Bin S7

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Caldipriscota;g__Candidatus Caldipriscus;x__unclassified Candidatus Caldipriscus;s__Candidatus Caldipriscus sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Muribacter muris

ncbi_submitter: King's College London


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-481

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: France

ncbi_organism_name: Pseudomonas syringae UB303

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae UB303


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: Cobetia sp. UBA4515

ncbi_submitter: University of Queensland


ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Barcelona


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 52

ncbi_submitter: SC


ncbi_country: Uruguay

ncbi_isolation_source: Native forest; Artigas; Uruguay

ncbi_organism_name: Cupriavidus sp. UYPR2.512


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Israel

ncbi_organism_name: Eisenbergiella tayi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: Florida

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: bacterium NLAE-zl-P10

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Gemmataceae bacterium


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Candidatus Amulumruptor sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Candidatus Amulumruptor;x__environmental samples;s__uncultured Candidatus Amulumruptor sp.


ncbi_submitter: Miguel Servet University Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Enterococcus sp.


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Aliidiomarina sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: not available: not collected

ncbi_submitter: SC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10868

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alistipes cottocaccae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-D23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Firmicutes bacterium TM09-10

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium TM09-10


ncbi_country: China: Hebei Province

ncbi_organism_name: Chryseobacterium sp. LAM-KRS1

ncbi_submitter: Institute of Agricultural Resources and Regional Planning, Chinese Academyof Agricultural Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22760;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Massilia sp. GCM10020059

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Belgium

ncbi_isolation_source: Kombucha

ncbi_organism_name: Gluconobacter potus

ncbi_submitter: Ghent University


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Monash University


ncbi_country: Taiwan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: kaohsiung medical university


ncbi_country: Canada

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: ATCC 17978-mff

ncbi_submitter: University of Alberta


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_organism_name: Bacteroides eggerthii


ncbi_country: USA: FL

ncbi_isolation_source: feces calf

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: France

ncbi_isolation_source: tick found on bird

ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG090

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Clinical Lab

ncbi_submitter: La Trobe University


ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: BGI


ncbi_country: Israel

ncbi_isolation_source: water

ncbi_organism_name: Legionella israelensis

ncbi_strain_identifiers: Bercovier 4

ncbi_submitter: Hospices Civils de Lyon


ncbi_country: USA: NC

ncbi_isolation_source: environmental non-food-contact surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Chile: Santiago

ncbi_isolation_source: nasal mucosa

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Andres Bello University


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Chlamydia trachomatis L2b/795

ncbi_submitter: Sanger Institute


ncbi_country: Argentina: San Luis

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_assembly_name: Rumen uncultured genome RUG12786

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0792

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S133

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S133


ncbi_country: South Korea

ncbi_isolation_source: tidal sediment

ncbi_organism_name: Flavobacterium sediminis

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Hospital Universitari Germans Trias i Pujol (Badalona)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: Bolivia: La Paz

ncbi_isolation_source: stool sample

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Dyella sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Intestine

ncbi_organism_name: Brachyspiraceae bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: India: Surat

ncbi_organism_name: Yersinia pestis 9

ncbi_submitter: National Centre for Cell Science, Pune - 411007, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 9


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-012

ncbi_organism_name: uncultured Ferrovum sp.


ncbi_organism_name: Sphingomonas cynarae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: CBMA 623

ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacteroides sp. CBMA 326

ncbi_strain_identifiers: CBMA 326

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Singapore

ncbi_isolation_source: Sewage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Singapore


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: India: Trivandrum; Kerala

ncbi_isolation_source: Diabetic foot ulcer

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: RAJIV GANDHI CENTRE FOR BIOTECHNOLOGY


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Mycetohabitans rhizoxinica

ncbi_submitter: Cornell University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_28


ncbi_organism_name: Janibacter sp. G349

ncbi_submitter: Shanxi Medical University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bartonella sp. AP14QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: Drainage

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Candidatus Ratteibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Ratteibacteria;x__unclassified Candidatus Ratteibacteria;s__Candidatus Ratteibacteria bacterium


ncbi_organism_name: Salmonella sp. NW631

ncbi_submitter: Sichuan University


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomadura geliboluensis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao agriculture university


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Blumenau


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: soil sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Unique Biotech Limited


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Diego Bay Sediment

ncbi_isolate: SDB

ncbi_isolation_source: methanogenic consortium capable of long-chain paraffin degradation (SDB culture) enriched from contaminated sediments of San Diego Bay; California; degrades n-alkanes from C25 to C50

ncbi_organism_name: Smithella sp. SDB

ncbi_strain_identifiers: SDB

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudokineococcus marinus

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1429530

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Netherlands: Nijmegen

ncbi_submitter: Boston College


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Phycisphaerales bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrng

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Clostridium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Gujarat

ncbi_isolation_source: petroleum contaminated soil

ncbi_organism_name: Gordonia sp. IITR100

ncbi_submitter: Indian Institute of Technology Delhi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. IITR100


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: trachea

ncbi_organism_name: Acinetobacter baumannii TG15233

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: USA: Maryland

ncbi_isolation_source: Infected agricultural plant

ncbi_organism_name: Erwinia tracheiphila

ncbi_strain_identifiers: MDCuke

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC072B07

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Chile: Coquimbo

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Laboratorio de Patobiologia Acuatica Universidad Catolica del Norte, Coquimbo


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: Foci

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Rhizobiales bacterium 24-66-13


ncbi_organism_name: Klebsiella sp. 90977

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Empedobacter falsenii


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05962

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: CAU


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: China: Zhejiang

ncbi_strain_identifiers: LXYSH

ncbi_submitter: Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Finniella inopinata

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leisingera sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis


ncbi_country: Germany: Freiburg

ncbi_isolation_source: Gut content

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: Thermanaerovibrio acidaminovorans

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Chile: Temuco

ncbi_isolation_source: urine

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: France: Tours

ncbi_isolation_source: carriage

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_submitter: Center for Microbial Communities


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Taiwan: Neipu Township

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: National Pingtung University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Flavobacteriales bacterium UBA5422

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_submitter: SC


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Aarhus University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14315

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: North-west University


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Thermogutta sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: China: Wuhan

ncbi_organism_name: Brachybacterium sp. NBEC-018

ncbi_submitter: National Biopesticide Engineering Technology Research Center, Hubei Academy of Agricultural Sciences


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: human skin

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: sputum of a hospitalized patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Bacteriology, Osaka City University Graduate School of Medicine


ncbi_country: USA:New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Medini Annavajhala's shared submissions


ncbi_isolation_source: dairy product

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Kingston University London, United Kingdom


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Parafrankia elaeagni

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Toho University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Schaalia turicensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Seattle

ncbi_isolation_source: Tissue Shoulder humeral membrane

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Denmark: Jaegersborg Dyrehave

ncbi_isolation_source: grassland soil

ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Manitoba


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Chakrabartia sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Candidatus Wujingus californicus

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wujingus;s__Candidatus Wujingus californicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wujingus;s__Candidatus Wujingus californicus


ncbi_organism_name: uncultured Cellvibrionaceae bacterium


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: University of Alberta


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA1110

ncbi_submitter: University of Queensland


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Germany

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: University of Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Florida

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: China: Tianjin

ncbi_isolation_source: water

ncbi_organism_name: Komagataeibacter xylinus

ncbi_strain_identifiers: xylinus

ncbi_submitter: Tianjin University of Science and Technology