ncbi_isolation_source: rat gut

ncbi_organism_name: Eubacterium sp. UBA7134

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. UBA7134


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Queensland university of technology


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Salmonella sp. NW1233

ncbi_submitter: Sichuan University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Gammaproteobacteria bacterium UBA7282

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Verrucomicrobia bacterium UBA3761

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA3761


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bartonella sp. AC53GZZY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: USFDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: West Virginia

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: USA: North Carolina

ncbi_isolation_source: isobutane enrichment from soil

ncbi_organism_name: Rhodococcus sp. 3A

ncbi_submitter: North Carolina State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 3A


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: South Korea

ncbi_isolation_source: seashore sediment

ncbi_organism_name: Thalassotalea sp. G2M2-11

ncbi_submitter: Kyonggi university


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 18

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassolituus sp. UBA2107

ncbi_submitter: University of Queensland


ncbi_country: Romania

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_strain_identifiers: NCPPB 1811

ncbi_submitter: University of Exeter


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Isoptericola hypogeus

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China Agricultural University


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: sediment

ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Mongolian Plateau

ncbi_organism_name: Carnobacterium sp. CS13

ncbi_submitter: Chongqing Academy of Animal Sciences


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_country: China: Chifeng

ncbi_isolation_source: tree leaf

ncbi_organism_name: Enterococcus sp. MMGLQ5-2

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Kazakhstan: North Aral Sea Region

ncbi_isolation_source: Plant nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_assembly_name: Streptococcus pyogenes

ncbi_organism_name: Streptococcus pyogenes MGAS10270

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes;x__Streptococcus pyogenes serotype M2;x__Streptococcus pyogenes MGAS10270


ncbi_organism_name: Dialister invisus


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: USA: Oregon

ncbi_organism_name: Neorickettsia sp. 179522

ncbi_submitter: The Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Anhui; Maanshan

ncbi_organism_name: Candidatus Terrybacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;x__unclassified Candidatus Terrybacteria;s__Candidatus Terrybacteria bacterium


ncbi_assembly_name: Salmonella enterica CVM N38914-SQ v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: FDA


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Streptomyces sp. NPDC002790

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_isolation_source: Human blood

ncbi_organism_name: Vibrio cidicii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Clostridiales bacterium


ncbi_country: France

ncbi_isolation_source: goat cheese (raw milk)

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: CIRM-BIA 1456

ncbi_submitter: Brigham Young University


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020174

ncbi_submitter: Broad Institute


ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Alberta

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Indian Ocean

ncbi_isolation_source: Copepod

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Frankia sp. CiP3

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: Lebanese American University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter fanqingshengii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Pseudomonas monsensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Flye

ncbi_organism_name: Streptomyces sp. ACT015

ncbi_submitter: Centro Nacional de Pesquisa em Energia e Materiais (CNPEM)


ncbi_organism_name: Leuconostoc lactis


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Curtobacterium sp. L3-7

ncbi_submitter: University of Georgia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_isolate: AOP34_CS2_surf _bin _30

ncbi_organism_name: Ancrocorticia populi

ncbi_strain_identifiers: AOP34_CS2_surf _bin _30

ncbi_submitter: Genoscope


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Tateyamaria armeniaca

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acinetobacter sp. ESBL14

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_submitter: The University Hong Kong


ncbi_country: Burkina Faso

ncbi_isolation_source: dolo wort

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. jakobsenii;x__Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gut

ncbi_submitter: University of North Carolina at Greensboro


ncbi_country: New Zealand

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolate: AOP19_E1_surf _bin _8

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP19_E1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus sp. VV15

ncbi_submitter: University of Otago


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 214

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1050

ncbi_submitter: University of Calgary


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: USA: MA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bradyrhizobium sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_country: South Korea: Sunchang

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: ND

ncbi_isolation_source: feces mink mustelidae

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Kaikohe

ncbi_isolation_source: Lotus corniculatus nodule

ncbi_organism_name: Mesorhizobium sp. NZP2077


ncbi_country: USA: Kansas

ncbi_isolation_source: freshwater

ncbi_organism_name: Enterococcus faecalis KS19

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany

ncbi_organism_name: Listeria monocytogenes WSLC1001

ncbi_submitter: ETH Zurich


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Pseudomonas sp. P179

ncbi_submitter: Broad Institute


ncbi_organism_name: Corynebacterium sp. KPL4043

ncbi_submitter: Baylor College of Medicine


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of Chicago


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 67

ncbi_submitter: Yonsei Medical Center


ncbi_organism_name: Emergencia timonensis

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: South Africa

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: pus from wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan:Arima Onsen

ncbi_organism_name: Thermus thermophilus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Costa Rica

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_assembly_name: Campylobacter coli CVM 41915 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli CVM 41915

ncbi_submitter: FDA/CVM


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Escherichia sp. WS2659_1

ncbi_submitter: Center for Disease Control and Prevention


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus xiangfangensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jinhua

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Duncaniella muris


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Spain: Marismas del Odiel; Huelva

ncbi_isolation_source: Saline soil

ncbi_organism_name: Aquibacillus salsiterrae

ncbi_submitter: University of Sevilla, Spain


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium CRU_2_3

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: South Korea

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Kyunghee Univ.


ncbi_organism_name: Merdibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: France

ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_isolation_source: actived sludge

ncbi_organism_name: Pimelobacter simplex

ncbi_submitter: institution of microbiology


ncbi_organism_name: Deinococcus ruber

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Mutton

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ouakam


ncbi_country: Sudan

ncbi_isolation_source: Mycetoma Lesion

ncbi_organism_name: Streptomyces werraensis

ncbi_submitter: Newcastle University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Chongqing Medical University


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_country: USA: Deer Island; Mississippi

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Marinomonas ostreistagni

ncbi_submitter: University of Southern Mississippi


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Salmonella enterica CVM N38909-SQ v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: IMG-taxon 2724679779 annotated assembly

ncbi_organism_name: Lutibacter agarilyticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. L10-4

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_strain_identifiers: ntmc-EN

ncbi_submitter: Toho University


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Parolsenella catena

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0203

ncbi_submitter: Broad Institute


ncbi_organism_name: Gordonia sesuvii

ncbi_submitter: Kasetsart University


ncbi_submitter: EMG


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: necrotic tissue

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: dystrophic pond

ncbi_organism_name: Rhodocyclus gracilis

ncbi_strain_identifiers: DSM 111

ncbi_submitter: Bellevue University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Alberta


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hominilimicola sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Enterococcus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: University of California Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_submitter: University of Florida


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Sphingomicrobium sp.


ncbi_country: Tunisia: Tozeur

ncbi_isolation_source: Date palm rhizosphere

ncbi_organism_name: Glutamicibacter sp. V16R2B1

ncbi_submitter: LBVBGR


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: EMG


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_assembly_name: Rumen uncultured genome RUG10343

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Israel

ncbi_organism_name: Nostoc linckia z13

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-325-C03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Parana; Curitiba

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: UENF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: MD

ncbi_isolation_source: Cultured Food

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: USFDA


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


gtdb_type_species_of_genus: t

ncbi_organism_name: Archangium gephyra

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pantoea ananatis DAR 76143

ncbi_submitter: Charles Sturt University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Longilinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Beijing city

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D4_bin-1208

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Marinobacter sp. LV10R520-4


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: cabbage leaves

ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: YX

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R938;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Aurantimicrobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 44:z4,z23:-


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: KAMDHENU UNIVERSITY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Kitasatospora sp. NPDC056138


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Peking University


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1825

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-0447

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Flavobacterium oreochromis

ncbi_submitter: Chulalongkorn University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lysinibacillus xylanilyticus


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus S1475

ncbi_submitter: UMCU


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lund University


ncbi_organism_name: Nakamurella sp. UYEF19

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Sydney

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom: England

ncbi_isolation_source: Anal gland

ncbi_submitter: University of Liverpool


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile: Santiago

ncbi_isolation_source: nasal mucosa

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Andres Bello University


ncbi_isolation_source: metagenome

ncbi_organism_name: Rhodopirellula baltica

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Cardiff

ncbi_isolation_source: Periodontal pocket

ncbi_organism_name: Prevotella fusca JCM 17724

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella fusca;x__Prevotella fusca JCM 17724


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC094048

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Hiroshima

ncbi_isolation_source: Japanese oyster larvae

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 16d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Acinetobacter venetianus


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Stenotrophomonas rhizophila


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylophaga sp.


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3709

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3709


ncbi_assembly_name: freshwater MAG --- MJ130820B_bin-0848

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx22242

ncbi_submitter: University Hospital Regensburg


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_isolation_source: sludge

ncbi_organism_name: Shewanella decolorationis

ncbi_submitter: Shenzhen University


ncbi_country: Sweden

ncbi_isolation_source: 3 year old Ardennes stallion; pre-breeding tests

ncbi_organism_name: Taylorella asinigenitalis 14/45

ncbi_submitter: University of Bristol


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Burkholderiales bacterium UBA2463


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: chicken carcass

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: Ocean University of China


ncbi_country: USA: GA

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Pseudorhodobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Salmonella enterica CVM N43462 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2127


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC051064

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EBI


ncbi_country: Germany

ncbi_isolation_source: Kiel Fjord

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: China: Neimenggu

ncbi_isolation_source: lake sediment

ncbi_organism_name: Hymenobacter sediminis

ncbi_submitter: Shandong University


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Candidatus Neomicrothrix sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp.


ncbi_organism_name: Rubrivivax gelatinosus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Peptostreptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Cameroon: Ekona

ncbi_isolation_source: Cocoyam rhizosphere (red)

ncbi_organism_name: Pseudomonas peradeniyensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lacticaseibacillus rhamnosus ATCC 21052

ncbi_submitter: Washington University Genome Center


ncbi_country: Estonia: Viljandimaa

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonas sp. UBA4815

ncbi_submitter: University of Queensland


ncbi_organism_name: Cellulophaga sp. Hel_I_12


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: AOP5_B1_surf _bin _10

ncbi_organism_name: Specibacter sp.

ncbi_strain_identifiers: AOP5_B1_surf _bin _10

ncbi_submitter: Genoscope


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: India: Kerala; Cochin

ncbi_isolation_source: retail fish market

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Central Institute of Fisheries Technology, Cochin


ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_level: Chromosome

ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Uni Hamburg


ncbi_country: South Korea: Inje-gun

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas natans

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Bacteroidales bacterium


ncbi_submitter: Montana State University


ncbi_country: Viet Nam

ncbi_isolation_source: hot-dog

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Gardnerella sp. DNF01199S

ncbi_submitter: Fred Hutch


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora sp. NPDC050276

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfuromusa sp.

ncbi_submitter: CNRS UMR6197


ncbi_submitter: Teesside University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univerza v Ljubljani, Biotehniska fakulteta


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_assembly_name: freshwater MAG --- Umea_bin-00215

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China: Guangxi Zhuang Nationality Autonomous Region

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Guangxi University


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14269

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFOXYD12_FULL_53_23


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Giesbergeria sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Planococcus glaciei

ncbi_submitter: NIPH, Prague


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: China: Anhui

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Tubingen

ncbi_isolation_source: cell culture

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Seqomics Ltd.


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Cinvestav


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: University of Zurich


ncbi_isolation_source: Uruguay

ncbi_organism_name: Kosakonia cowanii

ncbi_strain_identifiers: FBS 223

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: Pseudoduganella sp.


ncbi_organism_name: Methylophaga thalassica

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sri Lanka

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_assembly_name: IMG-taxon 2667527230 annotated assembly

ncbi_organism_name: Pseudomonas asplenii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-252

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Blastocatellia bacterium

ncbi_strain_identifiers: new MAG-252

ncbi_submitter: Micoorganism


ncbi_isolation_source: sour grain mash

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. delbrueckii;x__Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Guangdong

ncbi_isolation_source: sediment from a riverbed near an e-waste landfill

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: Najing Agricultural University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa

ncbi_isolation_source: goat

ncbi_organism_name: Listeria innocua

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: LNCC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Nappa cabbage kimchi

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Sookmyung Women's University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Moritella sp. PE36

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Taiwan

ncbi_isolation_source: surface seawater

ncbi_organism_name: Sphingomicrobium flavum

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Aalborgiella aggregata

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium cebidarum

ncbi_submitter: University of Parma


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: mBioClim


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Acasis viretata


ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Deltaproteobacteria bacterium UBA6967

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA6967


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Aarhus University


ncbi_organism_name: Candidatus Pygmaiobacter gallistercoris


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_assembly_name: IMG-taxon 2616644833 annotated assembly

ncbi_organism_name: Bifidobacterium bohemicum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Megasphaera intestinihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Newbould305 assembly v1

ncbi_country: Canada: Orangeville; Ontario

ncbi_isolation_source: bovine mastitis

ncbi_strain_identifiers: Newbould 305

ncbi_submitter: Geneva University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus str. Newbould 305


ncbi_country: China: Anhui

ncbi_isolation_source: venous blood of patient with cerebral hemorrhage

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Science and Technology of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: duedonoscope instrument

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CA

ncbi_isolation_source: Abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Rede Paraense de genômica e proteômica


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium RIFOXYB2_FULL_38_14


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2681813504 annotated assembly

ncbi_organism_name: Chryseobacterium shigense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: France: Salin-de-Giraud

ncbi_isolation_source: saltern

ncbi_organism_name: Halorhodospira neutriphila

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Crude oil-contaminated soil

ncbi_organism_name: Alkanindiges illinoisensis DSM 15370

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: London

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium choladohabitans

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Anaerovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter bereziniae


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG12519

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shinshu university hospital


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Salmonella sp. NW636

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Polyangia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1XD42-54

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Streptomyces sp. NPDC088553

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Mexico: Milpa Alta; CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: Draft

ncbi_country: USA:CA; La Jolla

ncbi_isolation_source: kelp frond

ncbi_organism_name: Vibrio sp. 624788

ncbi_submitter: San Diego State University


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Tang lab


ncbi_submitter: Northwest A&F University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Denmark

ncbi_isolation_source: bacteria culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Elista

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Uni Hamburg


ncbi_assembly_name: freshwater MAG --- KR_bin-2543

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Nitrosopumilus sp.


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Czech Republic

ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: NIPH 76

ncbi_submitter: University of Minho


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of Zurich


ncbi_country: Poland: Poznan

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 2785

ncbi_submitter: National Medicines Institute


ncbi_country: Nigeria: Sokoto

ncbi_organism_name: Dietzia massiliensis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_submitter: Sunstar Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus constellatus;sb__Streptococcus constellatus subsp. constellatus


ncbi_isolation_source: Fermenting string beans

ncbi_organism_name: Leuconostoc mesenteroides subsp. dextranicum

ncbi_strain_identifiers: NBRC 3349

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Paenirhodobacter enshiensis

ncbi_submitter: Xiamen University


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Poultry Meat (Thighs)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_country: Japan:Sagami bay

ncbi_isolation_source: liquefied natural gas

ncbi_submitter: Super-cutting-edge Grand and Advanced Research (SUGAR) Program, Japan Agency for Marine-Earth Science and Technology (JAMSTEC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus platifrons methanotrophic gill symbiont


ncbi_organism_name: Vibrio cholerae MZO-3

ncbi_submitter: Broad Institute


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter terrestris

ncbi_submitter: McGill University


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV095

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: microwave pre-treated clinical waste

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universiti Malaysia Pahang


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Staphylococcus succinus

ncbi_submitter: Tufts University


ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Denmark: Viby

ncbi_isolation_source: activated sludge from Viby_18-Q3-R106-67

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacter cloacae


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: Radboud University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paraburkholderia caledonica


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG14205

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SCOPE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_01_FULL_52_18


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. wkB72

ncbi_submitter: University of Texas at Austin


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIMI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Cheonan-si

ncbi_organism_name: Collinsella ureilytica

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3534

ncbi_submitter: Broad Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pleomorphochaeta sp.

ncbi_submitter: JNTUH


ncbi_organism_name: Escherichia coli

ncbi_submitter: College de France


ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Spongiibacter tropicus

ncbi_submitter: Tsinghua University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_submitter: University of Oxford


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Paucilactobacillus nenjiangensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC059218

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: China: Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Bulgaria: eastern Black Sea

ncbi_isolation_source: Marine (Black Sea)

ncbi_organism_name: Synechococcus sp. BS55D

ncbi_submitter: National Research Council (CNR)


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_assembly_name: Rumen uncultured genome RUG11498

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Biomin Research Center


ncbi_submitter: Graduate School of Frontier Sciences, University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium catenulatum;sb__Bifidobacterium catenulatum subsp. kashiwanohense;x__Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: jiangxi

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella sp. A39

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Ningbo

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_country: China: Shaanxi

ncbi_isolation_source: Diseased shoots

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Chlorobiales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;x__environmental samples;s__uncultured Chlorobiales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii 25750_7

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: South China Agricultural University


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Serratia ureilytica

ncbi_strain_identifiers: Ngtc NS 33

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_country: Brazil: Tupa

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Italy

ncbi_isolation_source: swine manure

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Guigang City; Guangxi Province

ncbi_isolation_source: stool