ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


gtdb_representative: f

ncbi_country: Belarus: Vitebsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_assembly_level: Scaffold

ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFOXYC2_FULL_41_11


ncbi_organism_name: Candidatus Merdousia sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Intestinicryptomonaceae;g__Candidatus Merdousia;x__unclassified Candidatus Merdousia;s__Candidatus Merdousia sp.


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: conjunctival swab

ncbi_organism_name: Corynebacterium sp. ES2715-CONJ3

ncbi_submitter: US FDA


ncbi_organism_name: Labilithrix sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: EMG


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Huelva; Cueva de la Mora

ncbi_isolation_source: Deep anoxic layer (35m depth) Cueva de la Mora

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Pennsylvania State University


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Haifa


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_assembly_name: freshwater MAG --- AM_bin-3813

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: cervico-vaginal swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_assembly_level: Chromosome

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Tongji University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom: England

ncbi_isolation_source: Interdigital cyst RF

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Leuconostoc sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Endomicrobium macrotermitis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: NM; Lechuguilla Cave

ncbi_isolation_source: Cave Surface Area

ncbi_organism_name: Agrobacterium sp. LC34

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


gtdb_type_species_of_genus: t

ncbi_country: USA: Deep Sea sediment in Monterey Canyon; California

ncbi_isolation_source: marine sediment

ncbi_organism_name: Methyloprofundus sedimenti

ncbi_refseq_category: reference genome

ncbi_submitter: California Institute of Technology


ncbi_submitter: EMG


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus caldus

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: PLEURAL FLUID

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Guatemala

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Duke University


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Australia: Melbourne

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Monash University


ncbi_country: Uruguay

ncbi_isolation_source: Strains belonging to this species have been isolated from eucalyptus leaves showing symptoms of bacterial blight and die-back in Uruguay

ncbi_organism_name: Pantoea eucalypti

ncbi_submitter: Nanjing Forestry University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG_4_10_14_0_2_um_filter_39_12


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Phil the wombat

ncbi_organism_name: Christensenellaceae bacterium Phil7

ncbi_submitter: University of Queensland


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus sp. Y412MC10

ncbi_submitter: BGI


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_isolate: metabat2_pooled_metaflye.1162 MAG

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.1162 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Honduras

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Acinetobacter baumannii 44467_6

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: genital

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Arctic Ocean: Bering Sea

ncbi_isolation_source: Marine sediment

ncbi_organism_name: Cognaticolwellia beringensis

ncbi_submitter: Third Institute Of Oceanography,State Oceanic Administration


ncbi_isolation_source: Faeces


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardioides eburneus

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Kwazulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 31

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Germany

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: throat

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Vicinamibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Biltong

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 20342;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N48686 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25766_5

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Ohtaekwangia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Streptomyces physcomitrii


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces broussonetiae


ncbi_organism_name: Streptomyces aureus


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: EPFL


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Turicimonas muris

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Rhodococcoides kroppenstedtii


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Paraburkholderia atlantica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Rubrivivax sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Salmonella sp. fjx14s7

ncbi_submitter: Food safety


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Arab Emirates University


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Stanford University


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Germany: Baltic Sea; Binz

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_country: India

ncbi_organism_name: Rathayibacter tritici

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Jonquetella anthropi E3_33 E1

ncbi_submitter: WUGSC


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Rumen uncultured genome RUG398

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Seymour; Indiana

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. K33

ncbi_submitter: Central Michigan University


ncbi_assembly_name: Rumen uncultured genome RUG438

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China

ncbi_isolation_source: river water

ncbi_organism_name: Duganella vulcania

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University of California, Los Angeles


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: BGI


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanogingivalaceae bacterium

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;x__unclassified Candidatus Nanogingivalaceae;s__Candidatus Nanogingivalaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces sp. NPDC002764

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Russia: Krasnoyarsk Region

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_country: Portugal: Aveiro

ncbi_isolation_source: water sample

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Universidade de Aveiro


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Enterococcus sp. C91

ncbi_submitter: Northwest A & F University


ncbi_country: China: Yunnan

ncbi_isolation_source: Lanping lead-zinc tailings

ncbi_organism_name: Mycolicibacterium arseniciresistens

ncbi_submitter: Kunming University


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Spain: off the coast of Alicante

ncbi_isolate: MedPE

ncbi_isolation_source: Mediterranean seawater enriched with a specific particulate matter

ncbi_organism_name: Gammaproteobacteria bacterium MedPE

ncbi_strain_identifiers: MedPE

ncbi_submitter: University Miguel Hernandez


ncbi_country: South Korea: Busan

ncbi_isolation_source: Head kidney; Spleen

ncbi_organism_name: Aeromonas salmonicida subsp. masoucida

ncbi_submitter: PUKYONG NATIONAL UNIVERSITY


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae FSL S3-026

ncbi_submitter: Population Medicine and Diagnostic Sciences, Cornell University


ncbi_country: Russia: Shulgan-Tash cave; Bashkiria

ncbi_isolation_source: cave water

ncbi_organism_name: Massilia sp. H-1

ncbi_submitter: ARRIAM


ncbi_country: Canada: Toronto

ncbi_isolation_source: Food - Raw Cow s Milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Australia: Hobart

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Autonoma de Sinaloa


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-1533

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6077

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: food (fermented)

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Medical Affairs, MSD K.K.


ncbi_organism_name: [Clostridium] leptum


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Oyen

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. BRG-100

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ardenticatenales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW318

ncbi_submitter: Sichuan University


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_isolation_source: infected rice leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Guangxi University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB11-047

ncbi_submitter: Broad Institute


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_submitter: University of Antwerp


ncbi_organism_name: Streptomyces lacrimifluminis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Streptosporangium sandarakinum

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University College Cork


ncbi_country: USA: Illinois

ncbi_organism_name: Bacillus sp. ET1

ncbi_submitter: Illinois Wesleyan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ET1


ncbi_country: Israel

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_isolation_source: carcass

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JMI Laboratories


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: soil [ENVO:00001998]|soil organic matter [ENVO:04000008]|plant litter [ENVO:01000628]|plant matter [ENVO:01001121]

ncbi_organism_name: Streptomyces glycanivorans

ncbi_submitter: DNASense ApS


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: IMG-taxon 2642422567 annotated assembly

ncbi_organism_name: Idiomarina abyssalis

ncbi_strain_identifiers: KMM 227

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Antarctica: fresh water

ncbi_isolation_source: fresh water

ncbi_organism_name: Janthinobacterium svalbardensis

ncbi_submitter: Korea Polar Research Institute


ncbi_country: India

ncbi_isolation_source: seawater

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: Veer Narmad South Gujarat University


ncbi_assembly_name: Salmonella enterica CVM N43458 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: California; Joshua Tree National Park; Colorado Desert

ncbi_isolation_source: sandy; gravelly soil

ncbi_organism_name: Microcoleus vaginatus WJT46-NPBG5

ncbi_submitter: University of California, Riverside


ncbi_country: Spain: Municipality in the province of Salamanca

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas brassicacearum subsp. neoaurantiaca

ncbi_submitter: University of Salamanca


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_isolation_source: spleen

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Connecticut Graf Lab


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: Hartford; CT

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Vibrio parahaemolyticus TUMSAT_DE1_S1

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus catus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: scu


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom

ncbi_isolation_source: Chondroid

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Canada: Guelph

ncbi_isolation_source: Fresh seeds

ncbi_organism_name: Lactococcus sp. EKM502L

ncbi_submitter: University of Guelph


ncbi_isolation_source: leaf

ncbi_organism_name: Micrococcus aloeverae

ncbi_submitter: Food Industry Research and Development Institute


ncbi_assembly_name: Leuconostoc gelidum subsp. gasicomitatum KG16-1

ncbi_organism_name: Leuconostoc gasicomitatum KG16-1

ncbi_submitter: UNIVERSITY OF HELSINKI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gasicomitatum;x__Leuconostoc gasicomitatum KG16-1


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Basurto University Hospital


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Streptomyces sp. NPDC018947

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Limivivens sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Limivivens;x__unclassified Candidatus Limivivens;s__Candidatus Limivivens sp.


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Candidatus Bilophila faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Fastidiosipila sanguinis

ncbi_submitter: EMG


ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia lata

ncbi_submitter: LM-UGent


ncbi_organism_name: Escherichia coli

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_country: USA: Queens; NY

ncbi_isolation_source: media

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_strain_identifiers: East River isolate A passage control

ncbi_submitter: Queens College


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Cincinnati Childrens Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Klebsiella sp. 70963

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: VA

ncbi_isolation_source: ATCC Isolate

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Shewanella sp. BJSY2023SW003

ncbi_submitter: Hangzhou CDC


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: wound abdominal

ncbi_organism_name: Corynebacterium sp. HMSC055G02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Denmark: Region Zealand

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Thioclava sp. FR2

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Psychrobacter sp. NPDC078511

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- KR2_bin-0125

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from hatchery farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacillus cereus str. Schrouff

ncbi_strain_identifiers: Schrouff

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus str. Schrouff


ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Aeromonas sp. S4(2024)

ncbi_submitter: the Chinese University of Hong Kong


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_country: South Korea:Seoul

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus wiedmannii


ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Porphyromonas gingivicanis JCM 15907

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__Porphyromonas gingivicanis;x__Porphyromonas gingivicanis JCM 15907


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Belgium

ncbi_isolation_source: Kombucha

ncbi_organism_name: Gluconobacter sp. R75690

ncbi_submitter: Ghent University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Greenfield; Indiana

ncbi_isolation_source: Elanco Animal Health

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Elanco Animal Health


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_assembly_name: freshwater MAG --- Umea_bin-03130

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: leaf

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hiroshima University


ncbi_country: USA:Auburn; Alabama

ncbi_isolation_source: gut of diseased catfish

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: USDA


ncbi_organism_name: Sinorhizobium sp. B11

ncbi_submitter: Institute of Microbiology, Heilongjiang Academy of Sciences


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: uncultured Deinococcaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Netherlands: Oosterhout

ncbi_organism_name: Wolbachia endosymbiont of Operophtera brumata

ncbi_submitter: Wageningen University


ncbi_organism_name: Serinicoccus marinus

ncbi_submitter: marine college, shandong university


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Haikou

ncbi_organism_name: Vibrio coralliilyticus

ncbi_strain_identifiers: SCSIO 43001

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences


ncbi_organism_name: Xanthomonas axonopodis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bradyrhizobium sp. AZCC 1721

ncbi_strain_identifiers: AZCC 1721


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Shenzhen

ncbi_isolation_source: vaginal secretions

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: sunkii

ncbi_submitter: Shenzhen Seventh People's Hospital


ncbi_country: China: Hebei

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 311

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 5174

ncbi_submitter: University of Calgary


ncbi_organism_name: Sideroxyarcus sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Schwartzia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Samara

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2826

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: International Islamic University Malaysia


ncbi_country: France: Marseille

ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Mycolicibacterium aubagnense

ncbi_submitter: Uppsala University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Bacteroides mediterraneensis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerotruncus colihominis


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Carnobacteriaceae bacterium


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Ralstonia pseudosolanacearum


ncbi_organism_name: Bacteroides intestinalis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Oxford


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Tryon; SC

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcus landrumensis

ncbi_submitter: University of Mississippi


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: UNIVERSITY OF READING


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG12949

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan: Taoyuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: Pulmonary

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei University College of medicine


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillaceae bacterium


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Caldilinea aerophila

ncbi_submitter: University Duisburg-Essen


ncbi_assembly_name: Salmonella enterica CVM N41906-R v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD31

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: Brazil: Mato Grosso River

ncbi_isolation_source: gut

ncbi_organism_name: Paenibacillus piscarius

ncbi_submitter: Instituto de Microbiologia Paulo de Goes


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malawi: Blantyre

ncbi_isolation_source: hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris


ncbi_country: Switzerland: Grindelwald

ncbi_isolate: wEcas

ncbi_organism_name: Wolbachia endosymbiont of Erebia cassioides

ncbi_strain_identifiers: wEcas

ncbi_submitter: University of Basel


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gemmiger avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger avistercoris


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Nara Medical University


ncbi_isolation_source: Caecum


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Auckland


ncbi_isolate: Eubacterium limosum 81C1

ncbi_organism_name: Eubacterium limosum

ncbi_strain_identifiers: Eubacterium limosum 81C1

ncbi_submitter: Keio University, School of Medicine


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Stephan Angeloff Institute of Microbiology, Bulgarian Academy of Sciences


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC005508


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Collinsella sp.


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Capetown

ncbi_isolation_source: flocculating fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Clearwater; FL

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC 04229

ncbi_submitter: McMaster University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Providencia vermicola

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Burkina Faso

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2008223

ncbi_submitter: IGS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA149

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: US Food and Drug Administration


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: RARI


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: United Kingdom: Aberdeen

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Chicago


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine


ncbi_country: Belgium: Libramont

ncbi_isolation_source: fatal septicemia after dog bite

ncbi_organism_name: Capnocytophaga canimorsus Cc5

ncbi_submitter: BIOZENTRUM, Basel university, Switzerland


ncbi_country: USA: Bodega Marine Lab; CA

ncbi_organism_name: Vibrio sp. UCD-FRSSP16_10

ncbi_submitter: UC Davis


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Fresh water

ncbi_organism_name: Campylobacter lari

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Taiwan

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: National Chung Hsing University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: China: Zhejiang

ncbi_organism_name: Paraburkholderia sacchari

ncbi_submitter: Zhejiang A&F Univeristy


ncbi_country: China: Guangdong

ncbi_isolation_source: Suppuration

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Methanobacteriaceae archaeon

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces umbrinus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Corynebacterium sp. YSMAA5_1_F9

ncbi_submitter: University of York


ncbi_organism_name: Paenibacillus aurantiacus

ncbi_strain_identifiers: TISTR 2452

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: PAXJ

ncbi_submitter: Xinjiang University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_isolation_source: chicken gut metagenome


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: USA: NY

ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000965


ncbi_country: India: West Bengal; Kochbihar

ncbi_isolation_source: soil

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Assam University, Silchar


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: saline soil

ncbi_organism_name: Flavobacterium alkalisoli

ncbi_submitter: Inner Mongolia University


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. AM29-10AC

ncbi_submitter: BGI


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Limosilactobacillus galli

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Kazakhstan: East-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade whole tissue extract

ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: University of Washington-Seattle


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: British Columbia;Vancouver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. zj-f94

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Azorhizobium sp. 32-67-21


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:Alaska; North Slope; Schrader Bluff formation

ncbi_isolation_source: oil reservoir sample SB1

ncbi_organism_name: Bacteroidetes bacterium 38_7

ncbi_submitter: Lawrence Berkeley National Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium 38_7


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Georgia

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. GAFFF2

ncbi_submitter: Emory University


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces rubrolavendulae

ncbi_submitter: National Academy of Agricultural Science, Rural Development Adminstration


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR4300

ncbi_submitter: Los Alamos National Laboratory


ncbi_submitter: Chinese National HGC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. bulgaricus;x__Lactobacillus delbrueckii subsp. bulgaricus 2038


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Germany

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Austria

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: AGES


ncbi_isolation_source: Human vagina

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Cellvibrio sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Stony Brook University


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli MP021017.5

ncbi_submitter: IGS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Stutzerimonas degradans

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Shewanella glacialipiscicola

ncbi_submitter: Nofima


ncbi_country: China: Shenzhen

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_assembly_name: IMG-taxon 2619618872 annotated assembly

ncbi_organism_name: Halopseudomonas bauzanensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: Ground lamb

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: filling room drain from meat processing facility

ncbi_organism_name: Microbacterium sp. BF1

ncbi_submitter: FFoQSI GmbH


ncbi_organism_name: Morganella morganii

ncbi_submitter: Shandong First Medical University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Allisonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: India

ncbi_isolation_source: urine

ncbi_submitter: SMCW, SUHRC and SSBS, Symbiosis International Deemed University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Poland

ncbi_organism_name: Providencia sp. wls1948

ncbi_submitter: NanKai universit


ncbi_organism_name: Enterobacter cloacae complex sp. 372A7

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 372A7


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Trend Biotech Co., Ltd.,


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Germany

ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-104 (HZI)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: USA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8134

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Hoeflea sp. IMCC20628

ncbi_submitter: Inha University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Russia: Moscow

ncbi_isolation_source: Intestine of patients with Crohn s disease

ncbi_organism_name: Escherichia coli

ncbi_submitter: RIPCM


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Manitoba


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2248

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Maribacter sp. Asnod2-G09

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium auriscanis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthobacter autotrophicus DSM 431

ncbi_submitter: Harvard Medical School


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Vescimonas fastidiosa

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: Botswana international University of Science and Technology


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_organism_name: Dysosmobacter welbionis


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Colorado

ncbi_isolation_source: nasal and infraorbital sinuses

ncbi_organism_name: Avibacterium sp. 20-132

ncbi_submitter: University of Wyoming


ncbi_isolation_source: human gut

ncbi_organism_name: Segatella copri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: supragingival plaque biofilm of a molar

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 877;x__Actinomyces sp. oral taxon 877 str. F0543


ncbi_country: Canada

ncbi_isolation_source: throat

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Portugal: North and Centre

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Paragemmobacter amnigenus

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Colindale

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Carolinas

ncbi_isolation_source: hair

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paenibacillus polymyxa


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 64 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: China: Zhejiang

ncbi_isolation_source: Secretion

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Blattabacterium punctulatus

ncbi_strain_identifiers: CPUwf

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Thailand

ncbi_organism_name: Campylobacter jejuni


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_strain_identifiers: ISU 909

ncbi_submitter: USDA-ARS


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: India: Hyderabad city; Telangana

ncbi_isolation_source: Milk

ncbi_submitter: Madurai Kamaraj University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood


ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: VA

ncbi_isolation_source: Blood culture from a patient in Cape Town; South Africa

ncbi_organism_name: Campylobacter jejuni subsp. doylei

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center