ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: UCLA School of Dentistry

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_level: Contig

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2634166332 annotated assembly

ncbi_organism_name: Propionispora vibrioides

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: China: Tengchong; Yunnan; ShuiReBaoZha

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_submitter: EPFL


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. MSMB2041

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: The University of Hong Kong


ncbi_isolate: unknown

ncbi_isolation_source: not available

ncbi_organism_name: uncultured Avibacterium sp.

ncbi_strain_identifiers: unknown

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: Argentina

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA: St. Louis

ncbi_organism_name: Carnobacterium sp. ZWU0011

ncbi_submitter: University of Oregon


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_isolation_source: vagina

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Megasphaera;s__Megasphaera vaginalis (ex Bordigoni et al. 2020)


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of the Sunshine Coast


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IOC- FIOCRUZ


ncbi_country: Pakistan

ncbi_isolation_source: soil sample

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: NIBGE Faisalabad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Alistipes putredinis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Scytonema sp. HK-05

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Emergencia sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_organism_name: Acidaminococcaceae bacterium


ncbi_isolation_source: bone

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_assembly_name: IMG-taxon 2681812815 annotated assembly

ncbi_organism_name: Acidiphilium rubrum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Fudan University


ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Negadavirga shengliensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Salmonella sp. NW173

ncbi_submitter: Sichuan University


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Pseudomonas sp. R1-18

ncbi_submitter: KAUST


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: University of Liege


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. AZ094

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Flavonifractor plautii


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin;x__Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853


ncbi_country: Russia: Yakutia

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal Research Center for Animal Husbandry named after Academy Member L.K. Ernst


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Marion County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1H2

ncbi_submitter: Oregon State University


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: EMG


ncbi_country: Iran: Ramsar Forest

ncbi_organism_name: Cellulomonas iranensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Anaerotruncus rubiinfantis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS2017

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Quebec

ncbi_organism_name: Serratia marcescens

ncbi_submitter: INRS


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Sutterella sp.


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Paraguay

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Parabacteroides distasonis


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Tokyo University of Pharmacy and Life Science


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;s__Candidatus Yonathbacteria bacterium CG_4_8_14_3_um_filter_46_25


ncbi_organism_name: Acetomicrobium hydrogeniformans ATCC BAA-1850

ncbi_submitter: The Genome Center


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125133

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Virginia Tech


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Yponomeuta malinellus


ncbi_organism_name: Rickettsia prowazekii str. Katsinyian

ncbi_strain_identifiers: Katsinyian

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T13127

ncbi_submitter: Broad Institute


ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: University of British Columbia


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acetobacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: patient environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Aequorivita sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Eulwangri beach

ncbi_isolation_source: sea sand

ncbi_organism_name: Marimonas arenosa

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_organism_name: Puia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: India

ncbi_isolation_source: BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidota bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas mosselii DSM 17497

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas mosselii;x__Pseudomonas mosselii DSM 17497


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWE2_46_68


ncbi_organism_name: Escherichia coli

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 26016_5

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Brazil: Roraima

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UANTW


ncbi_isolation_source: sterile site

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR068

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Salinispora arenicola CNT859


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Thermus caliditerrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: EMG


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_submitter: Wayne State University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Gansu Agricultural University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Pseudomonas antarctica

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Actinomadura fibrosa

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Firmicutes bacterium CAG:176

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:176


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA5113

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sudan

ncbi_organism_name: Brucella abortus F6/05-4

ncbi_submitter: Broad Institute


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium 4484_213


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas sp. GD03691

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Sutterella sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Oceanobacillus sp. SE10311

ncbi_submitter: Philippine National Collection of Microorganisms


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_country: Switzerland

ncbi_isolation_source: Inguinal/Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Desulforhopalus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Germany

ncbi_isolation_source: wound swab after dog bite

ncbi_organism_name: Corynebacterium canis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Ureaplasma urealyticum

ncbi_submitter: Cardiff University


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa:Durban


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium SM1_73


ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:London

ncbi_isolation_source: rectal

ncbi_organism_name: Chlamydia trachomatis


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Pakistan

ncbi_isolation_source: Urine sample

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: QUAID-I-AZAM UNIVERSITY ISLAMABAD


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Harrisonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;x__unclassified Candidatus Harrisonbacteria;s__Candidatus Harrisonbacteria bacterium


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum


ncbi_country: Poland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU2 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: RU2 LB36

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01524

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01524


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yunnan

ncbi_organism_name: Bacillus sp. FJAT-27445

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-27445


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: EI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Biology Centre CAS


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Queensland Health Forensic and Scientific Services


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Jiangsu

ncbi_isolation_source: liver

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT2-18-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Peking University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Thiobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: AOP34_AQ2_surf _bin _20

ncbi_organism_name: Ancrocorticia sp.

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Legionella pneumophila 2300/99 Alcoy

ncbi_submitter: Valencia University and Public Health Research Superior Center (CSISP) of Valencia's Goverment, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella pneumophila;x__Legionella pneumophila serogroup 1;x__Legionella pneumophila 2300/99 Alcoy


ncbi_organism_name: Streptomyces sp. NPDC014656

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Veillonella magna

ncbi_submitter: SAHMRI


ncbi_isolation_source: desert regolith

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Pedobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: BTM

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_submitter: University of East Anglia


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Glutamicibacter nicotianae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Candidatus Porifericomitales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Porifericomitales;x__unclassified Candidatus Porifericomitales;s__Candidatus Porifericomitales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Streptomyces sp. NPDC058796

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Thermoflexus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacterium cellulitidis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: India: Gujarat

ncbi_isolation_source: a sand sample

ncbi_organism_name: Zooshikella ganghwensis

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_submitter: University of Washington


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Shewanella chilikensis


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Burkholderia seminalis


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Monash University


ncbi_submitter: MRSN BI Team


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Lactobacillus sp. UBA5815

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acetivibrio sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Marinobacter sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- Loc090721-7m_bin-838

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Beggiatoa sp.

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Affiliated Cancer Hospital of Zheng Zhou University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Ciceribacter thiooxidans

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Korea: Hwaseong

ncbi_isolation_source: blood

ncbi_organism_name: Brucella canis HSK A52141

ncbi_submitter: Macrogen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella canis;x__Brucella canis HSK A52141


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. NPDC051105

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Geobacillus kaustophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Factory - Heating

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: Japan

ncbi_isolation_source: pleural effusion

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_organism_name: Streptomyces sp. NPDC021356


ncbi_organism_name: Microbacterium laevaniformans

ncbi_strain_identifiers: VKM Ac-1138

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: water

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Shandong First Medical University


ncbi_country: Sweden: Jonstorp

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium coryneforme

ncbi_submitter: Uppsala university


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Aalborg

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Aalborg University


ncbi_country: Australia: Queensland

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Australian centre for genomic epidemiological Microbiology


ncbi_isolation_source: wastewater

ncbi_organism_name: Aeromonas media

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_submitter: University of Zurich


ncbi_country: Bolivia: La Paz

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 150 (4-3258106)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 150 (4-3258106)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolation_source: marine

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WM6373

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: human oral cavity UC19

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium oral taxon 488


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_country: China: Henan

ncbi_isolation_source: Mobile phone

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: swab isolate 1;2769MB

ncbi_submitter: University of California, Davis


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_submitter: La Trobe University


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-37

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-37


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_submitter: CLUE-TERRA


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: groin

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Shewanella sp. M-Br

ncbi_strain_identifiers: M-Br

ncbi_submitter: Chiba University


ncbi_country: China: Bengbu

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lactobacillus acidophilus La-14

ncbi_submitter: DuPont


ncbi_organism_name: Paenibacillus peoriae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Montana State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2025EL-00063


ncbi_organism_name: Pseudomonas putida

ncbi_strain_identifiers: ATCC 12633 adapted DEF2 recombinant strain

ncbi_submitter: University of Minnesota


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Institute of Special Animal and Plant Sciences of CAAS


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Pirellulales bacterium


ncbi_organism_name: Streptomyces niveus


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Spain

ncbi_isolation_source: Blood-CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Queensland


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 135

ncbi_submitter: INRA STLO


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Germany

ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Swansea University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Holdemania sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Aachen

ncbi_isolation_source: auditory canal

ncbi_submitter: Helmholtz-Centre for Infection Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Poland

ncbi_isolate: Sour cherry (Prunus cerasus) symptomatic leaf

ncbi_organism_name: Pseudomonas cerasi

ncbi_submitter: JLU


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_country: China: Wuchang; northeast of China.

ncbi_isolation_source: rhizospheric soil of rice

ncbi_organism_name: Microvirga thermotolerans

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 212 (3-9305343)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 212 (3-9305343)


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: AusGEM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2


ncbi_country: South Africa

ncbi_isolation_source: oropharynx

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University of Kaiserslautern


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: California; Eel River; South Fork Eel River between Leggett and Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Ontario

ncbi_isolation_source: Freshwater from boreal shield lake

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Laval University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Sweden: Anderstorp

ncbi_isolation_source: stool

ncbi_submitter: Division of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institute, Karolinska University Hospital, Huddinge, Sweden


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: South China Sea

ncbi_organism_name: Brachybacterium sp. sponge

ncbi_strain_identifiers: sponge

ncbi_submitter: SJTU


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 820

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10406

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_country: Brazil: Seropedica

ncbi_isolation_source: Superficially disinfested roots

ncbi_organism_name: Nitrospirillum amazonense

ncbi_submitter: Embrapa


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus brasilensis

ncbi_submitter: Kyungpook National University


ncbi_organism_name: uncultured Blautia sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Candidatus Avilachnospira avicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Avilachnospira;s__Candidatus Avilachnospira avicola


ncbi_country: Canada: Toronto

ncbi_isolation_source: water

ncbi_organism_name: Dehalogenimonas sp. WBC-2

ncbi_submitter: University of Toronto


ncbi_country: India: Vellore

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Christian Medical College


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG12101

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N46849-R v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: South China sea

ncbi_isolation_source: coral reef

ncbi_organism_name: Vibrio neocaledonicus

ncbi_submitter: Chinese Academy of Tropical Agriculturual Sciences


ncbi_assembly_name: BUMB

ncbi_country: Belgium: Botanic Garden Meise

ncbi_isolation_source: leaf nodules

ncbi_organism_name: Candidatus Paraburkholderia calva

ncbi_submitter: University of Zurich


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: USA: California

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of South Australia


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: RIKEN, BDR


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: soil of HITsz

ncbi_organism_name: Lysobacter soli

ncbi_strain_identifiers: EH

ncbi_submitter: Harbin Institue of Technology(Shenzhen)


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia: Saratov; Balakovo

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: RARI


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-292

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Enterobacter cloacae complex sp. SHL022

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL022


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Mitsuokella jalaludinii


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Kurthia gibsonii

ncbi_submitter: Sichuan University


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: McGill University


ncbi_organism_name: Floccifex porci

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Salmonella sp. NW57


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Kytococcus sedentarius

ncbi_submitter: ICAR-Central Inland Fisheries Research Institute


ncbi_organism_name: uncultured Acidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0456

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_assembly_name: Rumen uncultured genome RUG618

ncbi_organism_name: Megasphaera sp. DJF_B143

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: sediment

ncbi_organism_name: Halobacillus yeomjeoni

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Chicago


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Streptococcus salivarius 57.I

ncbi_submitter: Chang Gung University


ncbi_country: Italy

ncbi_isolation_source: inguinal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Beijing

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: caecum

ncbi_organism_name: Olsenella sp. An285

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Auburn University


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2009C-3996


ncbi_country: Mexico: Gulf of California

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Princeton University


ncbi_country: USA: Iowa

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Escherichia coli

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Handley Lab, University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Aspidapion aeneum


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antwerp


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Macrococcoides caseolyticum JCSC5402

ncbi_submitter: Juntendo University School of Medicine


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: SK

ncbi_submitter: UC San Diego


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Arthrobacter methylotrophus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas germanica

ncbi_submitter: Technical university of Denmark


ncbi_country: China: Shanghai

ncbi_submitter: Ruijin Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12236

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Brazil

ncbi_isolation_source: cowpea nodules

ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_submitter: Embrapa Agrobiologia


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_country: Japan

ncbi_isolation_source: skin of face; 1 single-cell amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Shigella flexneri

ncbi_submitter: bioBiome, Inc.


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Nigeria

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: International Foundation Against Infectious Diseases in Nigeria (IFAIN)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Limimaricola cinnabarinus LL-001

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Hydrogenedentales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;x__unclassified Candidatus Hydrogenedentales;s__Candidatus Hydrogenedentales bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: saltern sediment

ncbi_organism_name: Halomonas elongata

ncbi_submitter: Jiangsu University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: IMG-taxon 2651870314 annotated assembly

ncbi_organism_name: Actinomyces denticolens

ncbi_strain_identifiers: PA

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__;o__;f__;g__Candidatus Alloenteromonas;s__Candidatus Alloenteromonas pullistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;s__Candidatus Alloenteromonas pullistercoris


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: France

ncbi_isolation_source: reconstituted formula which had not been fed to infant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Tropheryma whipplei str. Neuro14

ncbi_submitter: URMITE


ncbi_isolation_source: feces of healthy patient

ncbi_strain_identifiers: BS 01

ncbi_submitter: Probiotical Spa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis BS 01


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Changshou District; Chongqing

ncbi_organism_name: Apibacter sp. HY039

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Terrimesophilobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Nocardia rhamnosiphila

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 298

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 298

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Psychrobacillus psychrotolerans

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: North Dakota; Cottonwood Lake Study Area

ncbi_isolation_source: Prairie Pothole Region wetland sediments

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Candidatus Micropelagius thuwalensis

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;g__Candidatus Micropelagius;s__Candidatus Micropelagius thuwalensis


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_submitter: Oregon State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Productos Lacteos de Asturias (IPLA-CSIC)


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNICAMP


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium RIFOXYA2_FULL_33_7


ncbi_country: Russia: Saratov region

ncbi_isolation_source: milk

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bulleidia sp. zg-1013

ncbi_submitter: China CDC


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Algeria: Bejaia

ncbi_isolation_source: Parsley

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_submitter: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Gracilibacteria bacterium CG_4_10_14_0_8_um_filter_38_28


ncbi_isolation_source: Manis javanica

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: USA

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Korea: Daegu

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. BG-O-102

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_country: China: Jiangsu; Suzhou

ncbi_isolation_source: Skin/soft tissue

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Brazil: Parana; Curitiba

ncbi_isolation_source: Sewer

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: vegetable

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Sweden

ncbi_isolation_source: Nasopharygneal lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolate: Pectobacterium versatile A82-S18-O15

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A82-S18-O15

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Canada: Ontario

ncbi_isolation_source: neck wound from dog bite

ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: Finland

ncbi_isolation_source: Dental plaque from an adult with severe periodontitis

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype e str. A160


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Arenimonas sp. SCN 70-307

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Antarctica: Northern Victoria Land

ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: gut content

ncbi_organism_name: Caniella muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Lysobacter sp.

ncbi_submitter: University of Colorado at Boulder