ncbi_isolation_source: tracheal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF READING


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Michigan State University Extension; Berrien County; Michigan

ncbi_genome_representation: full

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. MEJ108Y

ncbi_submitter: University of Chicago


ncbi_submitter: Christian Medical College


ncbi_country: Canada: Ontario

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: water

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_assembly_level: Scaffold

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_country: South Korea

ncbi_organism_name: Gryllotalpicola ginsengisoli DSM 22003

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Estonia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Los Angeles; California

ncbi_isolation_source: human oral cavity UCLA2

ncbi_organism_name: Candidatus Nanosynbacter featherlites

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__Candidatus Nanosynbacter featherlites

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__Candidatus Nanosynbacter featherlites


ncbi_country: Iran: Aran-Bidgol salt lake

ncbi_isolation_source: lake

ncbi_organism_name: Oceanobacillus halophilus

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Phasia obesa


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfarculus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Greece

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_strain_identifiers: ICMP 4983

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Salmonella sp. NW690

ncbi_submitter: Sichuan University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Deltaproteobacteria bacterium UBA5754

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA5754


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Allopontixanthobacter sediminis


ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 113

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 640

ncbi_submitter: University of Calgary


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Ukraine

ncbi_isolation_source: bottom sediment

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: ONU 553

ncbi_submitter: Odessa National after I.I. Mechnikov

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-384

ncbi_strain_identifiers: NRRL S-384

ncbi_submitter: University of Illinois


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Moraxella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_isolation_source: urine

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: OMG group bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__unclassified OMG group;s__OMG group bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Helicobacter pylori F32

ncbi_submitter: The University of Tokyo


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: bile specimen of liver transplant patient

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: Swiss Tropical and Public Health Institute


gtdb_type_species_of_genus: t

ncbi_country: China: Nanning

ncbi_organism_name: Poritiphilus flavus

ncbi_submitter: Guangxi University


ncbi_organism_name: Streptococcus suis 2524

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Actinomyces naeslundii

ncbi_strain_identifiers: Actinomyces naeslundii ATCC27039

ncbi_submitter: Depertment of Bacteriology, Osaka Dental University.


ncbi_country: Australia: Stanthorpe

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: La Trobe University


ncbi_organism_name: Aerococcus urinae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater

ncbi_organism_name: Candidatus Brocadia sp. AMX2

ncbi_submitter: Peking University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp. AMX2


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Loudi City

ncbi_organism_name: Streptomyces fagopyri

ncbi_submitter: Hunan university of science and technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kirov

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7222

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Cambodia

ncbi_isolation_source: rodent

ncbi_organism_name: Bartonella tribocorum

ncbi_submitter: IHU Mediteranee Infection


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Albidovulum sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guiyang

ncbi_isolation_source: tea soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: College of Life Science, Guizhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Bristol


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Faecalispora jeddahensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_37_25


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_submitter: Auburn University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Halothiobacillus sp. 20-53-49


ncbi_country: China: Hebei

ncbi_submitter: Shandong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kottbus


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jiangxi Provincial Center for Disease Control and Prevention


ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Verrucomicrobium sp.

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: Norway

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Macrococcus equi

ncbi_submitter: University of Bern


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Schinkia azotoformans


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Halomonas sp.


ncbi_country: United Kingdom: London

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Modernising Medical Microbiology


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG10_big_fil_rev_8_21_14_0_10_40_26


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Federal University of Sao Paulo


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_country: Pacific Ocean: the Mariana Trench Challenger Deep

ncbi_isolation_source: amphipod crustaceans

ncbi_organism_name: Colwellia sp. MT2012

ncbi_submitter: University of California San Diego


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Rubneribacter badeniensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Morganella sp. YQ_2

ncbi_submitter: WenZhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. YQ_2


ncbi_assembly_level: Chromosome

ncbi_organism_name: Sorangium sp. So ce296

ncbi_strain_identifiers: So ce296

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce296


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Microbacterium resistens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_submitter: Ocean University of China


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas nematodicola

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD0_bin-1181

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Desulfobacterales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: bioreactor

ncbi_organism_name: Clostridiales bacterium UBA4039

ncbi_submitter: University of Queensland


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: ChunLab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: China

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Sphingomonas carotinifaciens

ncbi_submitter: Ministry of Agriculture/Luzhou Branch of National Rice Improvement Center


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Iowa State University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EPEC 393

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Colon

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnoanaerobaculum saburreum

ncbi_submitter: EMG


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0308

ncbi_submitter: Texas A&M University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: terrestrial sediment

ncbi_organism_name: Arthrobacter sp. FW306-06-A

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Shellfish

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pleomorphovibrio marinus

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Nanjing Normal University

ncbi_isolation_source: Soil land

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: LICME WGH-6

ncbi_submitter: Nanjing Normal University


ncbi_country: Germany

ncbi_isolation_source: barn boot swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Succinivibrio sp.


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Leptospira sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Escherichia coli 112469215-isolate1

ncbi_submitter: The Genome Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: Mexico: Milpa Alta; CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-LB3

ncbi_submitter: Arkin Lab


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Hydrogenovibrio sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Ngtc NS 1

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Continental slope off northeastern Brazil; 170 km from the coastline and 280 km to the north of the mouth of the Parnaiba River

ncbi_isolation_source: Sediment core

ncbi_organism_name: Gracilimonas sp.

ncbi_submitter: UFRJ


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sour bamboo shoots sample

ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: South China University of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121989


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: Liriope platyphylla

ncbi_organism_name: Mesorhizobium liriopis

ncbi_submitter: Dongguk university


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: University of Minnesota


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter cloacae subsp. dissolvens

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. dissolvens


ncbi_organism_name: Acidovorax soli

ncbi_submitter: department of plant and microbial biology


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from patient hospitalized in intensive care unit (ICU)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2398

ncbi_submitter: Broad Institute


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Collinsella sp. 60_9


ncbi_country: China

ncbi_isolation_source: 2-3 butanediol fermentation

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Mount Allison University


ncbi_organism_name: Pseudomonas sp.


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: Caballeronia sp. BCC1704

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: NCTC 7802


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Medical University of Gdansk


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Opacimonas immobilis

ncbi_submitter: Shantou University


ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: zhejiang university


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Ruminococcus sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Aerococcaceae bacterium

ncbi_submitter: University of Minnesota


ncbi_organism_name: Leuconostoc mesenteroides subsp. jonggajibkimchii

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: Massilia sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hallym University College of Medicine


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV091

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: India: Guwahati; Assam; Near GNRC Hospital; Market; Amingaon

ncbi_isolation_source: retail fish market

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria sp. HKCCD7221

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK150

ncbi_submitter: Duke University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14262

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Silvanigrella sp.

ncbi_submitter: BILS


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Aquicoccus porphyridii

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Maryland

ncbi_isolation_source: human blood

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Dyer RSA345

ncbi_submitter: National Institutes of Health


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mediterranea sp.

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: GI

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-266

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Scalindua sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_country: China: Beijing

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: Rumen uncultured genome RUG14030

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Russia: Moscow

ncbi_organism_name: Nitrospira moscoviensis

ncbi_strain_identifiers: NSP M-1

ncbi_submitter: University of Vienna


ncbi_organism_name: Paraeggerthella hongkongensis

ncbi_submitter: Max Rubner-Institut


ncbi_country: Spain: Asturias

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_isolation_source: Urine

ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: HeBei North University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Neisseria meningitidis CU385

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA:Georgia; Atlanta

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Rhizobium rhizogenes NBRC 13257

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Rhizobium sp. OAE497

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: AOP34_BR2_surf _bin _6

ncbi_organism_name: Micrococcaceae bacterium

ncbi_strain_identifiers: AOP34_BR2_surf _bin _6

ncbi_submitter: Genoscope


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_organism_name: Acinetobacter baumannii 25935_2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: sediment from sea water fish tank

ncbi_organism_name: Crateriforma conspicua

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Seohaeicola zhoushanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Italy

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: China: SiChuan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_isolation_source: soil

ncbi_organism_name: Acidovorax sp. sic0104

ncbi_submitter: University of Chicago


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 416

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Switzerland

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_isolate: Fecal samples

ncbi_isolation_source: Assistance Publique - Hopitaux de Paris

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: EPFL


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_strain_identifiers: CFBP 1124


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: NDM 13

ncbi_submitter: VERGHESE KURIEN INSTITUTE OF DAIRY AND FOOD TECHNOLOGY, KVASU


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Parvularculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: raw milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: France

ncbi_isolation_source: Commercial product Serenade (Bayer)

ncbi_submitter: INRA


ncbi_organism_name: Streptosporangium violaceochromogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. ME02-6978.2a

ncbi_submitter: Oregon State University


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Germany

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_country: China: Beijing

ncbi_isolation_source: cecum contents

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces


ncbi_organism_name: Anoxybacteroides rupiense

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: phyllosphere

ncbi_organism_name: Pseudomonas sp. Leaf58

ncbi_submitter: University of Arizona


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Sichuan University


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Gulosibacter sediminis

ncbi_submitter: Penn State University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_strain_identifiers: MRD-NRLLH

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides sp. 4_1_36

ncbi_submitter: Broad Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Aliicoccus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces violaceus

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Hong Kong

ncbi_isolation_source: CSU

ncbi_organism_name: Acinetobacter baumannii AB-HKU3-10

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Brevundimonas sp. 3P9-tot-E

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Oenococcus oeni IOEB_S436a

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium RIFCSPHIGHO2_01_FULL_40_12b


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Chile: Santiago

ncbi_isolation_source: leg tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: Pakistan: Faisalabad

ncbi_submitter: University of Agriculture Faisalabad


ncbi_country: China: Hangzhou

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Argentina: Tandil

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Facultad de Ciencias Veterinarias


ncbi_organism_name: Haemophilus haemolyticus


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Urine

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Hoylesella timonensis


ncbi_country: Japan: Ibaraki; Tsukuba; AIST campus

ncbi_isolate: SMHYAMAC

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMHYAMAC

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Serbia: Novi Sad

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Poland

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_assembly_name: Nostoc sp. UHCC0302

ncbi_organism_name: Nostoc sp. UHCC 0302

ncbi_strain_identifiers: UHCC 0302

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. UHCC 0302


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Streptococcus sp. HMSC034B03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: New Zealand: Matawhero

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_strain_identifiers: ICMP 637

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: China: Jinan

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: contamination in NEB collection

ncbi_organism_name: Brevibacterium luteolum

ncbi_submitter: NEB


ncbi_country: Australia

ncbi_isolation_source: RESIDENTIAL AGED CARE FACILITY

ncbi_submitter: University of South Australia


ncbi_genome_category: derived from single cell

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12244

ncbi_submitter: South China Agricultural University


ncbi_country: China: Taihu Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Flavobacterium taihuense

ncbi_submitter: Henan University of Technology


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: USA: Berkley; California

ncbi_isolation_source: Mesocom

ncbi_organism_name: Pseudomonas berkeleyensis


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Paenibacillus sp. FSL F4-0087

ncbi_submitter: Penn State


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Guizhou Academy of Science


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Hyphomicrobiaceae bacterium UBA2767

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-447-N18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Suilimivivens sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Bartonella sp. TT29SHDZB

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Loclat_bin-03787

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Saccharicrinis sp. GN24d3

ncbi_submitter: Shandong University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Guangzhou

ncbi_isolation_source: deli meat samples

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Iraq: Ninevah

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Rutgers University


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Haliea sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_submitter: EMG


ncbi_organism_name: Treponema pedis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Birmingham; Alabama

ncbi_isolation_source: cervicovaginal lavage

ncbi_organism_name: Candidatus Lachnocurva vaginae

ncbi_submitter: University of Maryland Baltimore


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Helicobacter apodemus


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China:loess plateau

ncbi_isolation_source: bovine gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Science


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Russia

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Kingston University London, United Kingdom


ncbi_country: Portugal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: grocery store

ncbi_isolation_source: Fleur de sel salt

ncbi_organism_name: Vreelandella halophila

ncbi_submitter: UC Davis


ncbi_organism_name: Hyphomonas sp. 34-62-18


ncbi_isolation_source: sea water

ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Aeromonas sp. s3

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Balneola sp.


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Octapeptin C4

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Hoylesella shahii


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: France: Normandy

ncbi_isolation_source: Nasal discharge

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hunan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolate: metabat2_pooled_metaflye.960 MAG

ncbi_organism_name: Bacteroides sp. CAG:1060_57_27

ncbi_strain_identifiers: metabat2_pooled_metaflye.960 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_country: USA

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus CHOC6045

ncbi_submitter: Broad Institute


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Morganella psychrotolerans

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Streptomyces sp. NPDC056128


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC057072


ncbi_isolate: SPRUCE 697

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 697

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Streptomyces glaucescens

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: France

ncbi_isolation_source: grape must

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 2181

ncbi_submitter: Brigham Young University


ncbi_country: India: Thiruvandarkoil lake; Puducherry

ncbi_isolation_source: Eutrophic lake

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Pondicherry university


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: China: Zhangzhou

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Vibrio ziniensis

ncbi_submitter: Third Institute of Oceanography


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Wildcat Cove Preserve; FL

ncbi_isolation_source: gill sample from 3 different clams

ncbi_organism_name: Candidatus Sedimenticola endophacoides

ncbi_submitter: Clemson University


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbispora rosea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter sp. RC4

ncbi_submitter: CSIR-North East Institute of Science and Technology, Jorhat-785006, Assam,India


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_isolation_source: Vaginal sample

ncbi_organism_name: Porphyromonas vaginalis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 11A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2010C-4746


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: packaged pickles

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Kitasatospora sp. NPDC092948

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: National Medicines Institute


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: Sea surface microlayer

ncbi_organism_name: Paramylibacter kogurei

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: brines of olives

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Austria

ncbi_isolation_source: serosa

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: China: Anhui

ncbi_isolation_source: pig manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Abyssibacter sp.


ncbi_country: USA: Lebananon; NH

ncbi_isolation_source: sputum


ncbi_country: Czech Republic:Brno

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: AINO

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819;x__Campylobacter jejuni subsp. jejuni NCTC 11168-BN148


ncbi_isolation_source: Intestine

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: Blood

ncbi_submitter: WTSI


ncbi_isolation_source: LBC


ncbi_organism_name: Acinetobacter baumannii 24860_1

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB34

ncbi_submitter: Soochow University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus luti

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universiti Sains Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Caecum


ncbi_country: Brazil: Abrolhos

ncbi_organism_name: Vibrio maerlii

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Escherichia coli 907779

ncbi_submitter: Washington University


ncbi_country: China: Beijing

ncbi_isolation_source: Anus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_submitter: University Hospital Duesseldorf


ncbi_country: France: Villenave d Ornon; Bordeaux

ncbi_isolation_source: Transition wood tissues between necrotic and non-necrotic zones of grapevine cordon

ncbi_organism_name: Paenibacillus sp. S150

ncbi_submitter: INRAE


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Candidatus Goldiibacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Goldiibacteriota;x__unclassified Candidatus Goldiibacteriota;s__Candidatus Goldiibacteriota bacterium


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Parma


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Finland: University of Jyvaskyla

ncbi_isolation_source: experimental exposure to phage

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: University of Jyvaskyla


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: blood culture of a patient with cardiac pacemaker implants

ncbi_organism_name: Tsukamurella tyrosinosolvens

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Center for Gut Microbiome and Nutrition Research, Washington University School of Medicine


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: CFBP 8242

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Klebsiella sp. C283

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Algimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Micromonospora sp. NPDC018662


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: MRSN BI Team


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea_bin-01741

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Embleya sp. NPDC056538

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: BSD9I1 assembly 1

ncbi_isolation_source: Corroded Artesian bore well

ncbi_organism_name: Clostridium sp. BSD9I1

ncbi_submitter: Griffith University


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Niallia circulans

ncbi_strain_identifiers: KSC 657

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Empedobacter sp. UBA3239

ncbi_submitter: University of Queensland


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Shewanella sp. TB4-MNA-CIBAN-0142

ncbi_submitter: University of Florence


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Cyphomyrmex fungus garden

ncbi_organism_name: Enterobacter sp. Cy-1797

ncbi_submitter: UW-Madison


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_K_1

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: uncultured Moraxella sp.

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Morganella morganii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Candidatus Bacteroides pullicola

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: IZLSLER


ncbi_assembly_name: Rumen uncultured genome RUG10897

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: University of Bern


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Norway

ncbi_submitter: Massey University


ncbi_country: Germany: Dresden

ncbi_isolation_source: foot wound from a diabetic patient

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_country: USA: NY

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: vinegar

ncbi_organism_name: Acetobacter pasteurianus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-02 at a depth of 3m

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-316-03_S1_C1

ncbi_submitter: IGS


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_organism_name: Comamonas sp.


ncbi_organism_name: Pseudacidobacterium sp.

ncbi_submitter: Zhejiang University