ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA

ncbi_genome_representation: full

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: National Dairy Research Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: NY

ncbi_isolation_source: feces (Canis lupus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_level: Scaffold

ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The First Affiliated Hospital of Zhejiang Chinese Medical University


ncbi_organism_name: Escherichia coli PA24

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Vibrio sp. Vb2910

ncbi_submitter: The Hong Kong Polytechnic University


gtdb_representative: t

ncbi_organism_name: Scopulibacillus cellulosilyticus

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Spain

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antwerpen


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Candidatus Zinderia insecticola CARI

ncbi_strain_identifiers: CARI

ncbi_submitter: University of Montana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;g__Candidatus Zinderia;s__Candidatus Zinderia insecticola;x__Candidatus Zinderia insecticola CARI


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque; periodontitis

ncbi_organism_name: Fusobacterium nucleatum subsp. nucleatum

ncbi_strain_identifiers: KCOM 1250

ncbi_submitter: Chosun University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: vagina

ncbi_submitter: University of Florida


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: stool

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Phytoplasma citri

ncbi_submitter: Tabriz University, Tabriz, Iran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma citri


ncbi_organism_name: Clostridioides difficile DA00130


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain: Asturias

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Mastigocladus sp. ERB_26_2

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_organism_name: Streptococcus constellatus


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Rhodopila sp.

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Odense

ncbi_isolation_source: Tissue from foot

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: AOP9_A1_surf _bin _2

ncbi_organism_name: Pseudolactococcus laudensis

ncbi_strain_identifiers: AOP9_A1_surf _bin _2

ncbi_submitter: Genoscope


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia sp. MOD1-EC2449

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Salmonella enterica CVM N29307-SQ v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: University of Copenhagen, Faculty of Health and Medical Sciences


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Methylobacterium sp. NPDC097163


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Rheinheimera sp.


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Cloacibacterium caeni

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Candidatus Rickettsiella isopodorum

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Nanjing University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Flagellimonas alvinocaridis

ncbi_submitter: Shantou University


ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_submitter: University of Pecs Medical School


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB3u-43

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: stool

ncbi_submitter: CDC


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Proteus sp. (in: enterobacteria)

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. (in: enterobacteria)


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: China:Jiangxi; Jiujiang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Eubacterium sulci ATCC 35585

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__[Eubacterium] sulci;x__Eubacterium sulci ATCC 35585


ncbi_country: China: Sichuan

ncbi_isolation_source: soil sample

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: University of Lausanne


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: Abattoir

ncbi_submitter: International Livestock Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kibusi


ncbi_country: South Korea

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Asia Pacific Foundation for Infectious Diseases (APFID)


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 20

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: SO_2017_CLC bin 20

ncbi_submitter: University of Waterloo


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 422

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Russia: Moscow Region; Durykino ravine

ncbi_isolation_source: Bog soil from slope of Durykino raven

ncbi_organism_name: Candidatus Obscuribacterium magneticum

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;c__Elusimicrobia;x__Elusimicrobia incertae sedis;g__Candidatus Obscuribacterium;s__Candidatus Obscuribacterium magneticum


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104

ncbi_submitter: SC


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China:Xin Jiang; Pamir

ncbi_isolation_source: soil

ncbi_organism_name: Halomonas jincaotanensis

ncbi_submitter: Tarim University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Hohai University


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_strain_identifiers: SirnakmixA

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Brucella tritici

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Metamycoplasma sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: The Ohio State University


ncbi_organism_name: Enterobacter sp. 01-M-01-SI-ECC

ncbi_submitter: TRAPREA


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobia subdivision 6 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Verrucomicrobia subdivision 6;x__unclassified Verrucomicrobia subdivision 6;s__Verrucomicrobia subdivision 6 bacterium


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_submitter: University of Szeged


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xcv DC 93-7

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Halanaerobium sp. ST460_2HS_T2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Boiler

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Aarhus University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Maryland Eastern Shore


ncbi_country: India: Chandel district

ncbi_isolation_source: stem

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Momota Potshangbam's shared submissions


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Gemmataceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Candidatus Contendobacter sp.

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;x__unclassified Candidatus Contendobacter;s__Candidatus Contendobacter sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: China: Changde

ncbi_isolation_source: Guide to Japan Collection of Microorganisms

ncbi_organism_name: Nocardiopsis exhalans

ncbi_submitter: Hunan University of Arts and Science


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_submitter: University of Parma


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG283

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Malaysia: Kuala Pangsun village

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: New York University


ncbi_country: USA: Utah

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: unknown

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: CSIR-NEERI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University


ncbi_organism_name: Acetobacter orientalis NRIC 0481

ncbi_strain_identifiers: NRIC 0481

ncbi_submitter: Tokyo University of Agriculture


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: [Clostridium] citroniae WAL-17108

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Boston; MA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3773

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Machimus atricapillus


ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella sp. 119743

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Lishui

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: United Kingdom: London

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: TERRA Teaching and Research Centre Microbial Processes and Interactions (MiPI) Gembloux Agro-Bio Tec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium NLAE-zl-H412

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Caproicibacterium sp. XB1

ncbi_submitter: Anhui Polytechnic university


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Tardiphaga sp. 20_F10_N6_6

ncbi_submitter: VIB


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Haemophilus sp. HN_Hi12

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA6924

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA6924


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Avibacteroides avistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;x__Bacteroidaceae incertae sedis;g__Candidatus Avibacteroides;s__Candidatus Avibacteroides avistercoris


ncbi_country: China: Sichuan province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF97-08DTA

ncbi_submitter: BGI-Shenzhen


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Zurich


gtdb_type_species_of_genus: t

ncbi_strain_identifiers: ATCC 6051

ncbi_submitter: American Type Culture Collection (ATCC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10


ncbi_organism_name: uncultured Leifsonia sp.


ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: EMG


ncbi_country: China: Great Khingan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pinirhizobacter soli

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Complexo Hospitalario Universitario A Coruna


ncbi_organism_name: Pantoea sp.


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Finland: Around Helsinki

ncbi_isolate: Ffu

ncbi_organism_name: Sodalis sp. Ffu

ncbi_strain_identifiers: Ffu

ncbi_submitter: Queen Mary University of London

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. Ffu


ncbi_country: USA: Oregon

ncbi_isolation_source: diseased adult rainbow trout in Oak Spring Hatchery

ncbi_organism_name: Vagococcus salmoninarum

ncbi_strain_identifiers: NCFB 2777

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: CDC


ncbi_assembly_name: Rumen uncultured genome RUG14209

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: New Zealand

ncbi_isolation_source: mushroom caps exhibiting blotch discolorations at a mushroom farm

ncbi_organism_name: Pseudomonas fluorescens NZ007

ncbi_submitter: The Sainsbury Laboratory


ncbi_country: France: Bordeaux

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oceanomicrobium sp.

ncbi_submitter: EPFL


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Serratia symbiotica (Tuberolachnus salignus)

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Virginia

ncbi_organism_name: Haematospirillum jordaniae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Thailand: Kalasin

ncbi_isolation_source: som fak

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Exiguobacterium sp. s140

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s140


ncbi_assembly_name: IMG-taxon 2600255392 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D3_bin-1206

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Stanford University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Zhejiang

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: isolated from Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC048523

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Estonia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: marine

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: University of Queensland


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S30

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Russia: Leningrad region

ncbi_isolation_source: cow rumen

ncbi_organism_name: Bacillus sp. 159

ncbi_submitter: Biotrof+

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 159


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Ureaplasma urealyticum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_country: USA

ncbi_organism_name: Escherichia coli O145:H25 str. 07-3858

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:H25;x__Escherichia coli O145:H25 str. 07-3858


ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. JMF_04 NA10

ncbi_strain_identifiers: JMF_04 NA10

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: furunculosis; ST80 PVL carrier; family cluster SSTI

ncbi_submitter: Novartis Vaccines and Diagnostics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 103564


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: stool

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: University of Bern


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Aureibacter tunicatorum

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: sichuan university


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Salaquimonas sp.

ncbi_submitter: The University of Melbourne


ncbi_country: China: Shenzhen

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Campylobacter sp. CFSAN093238

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces sp. NPDC048603

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: Quanzhou medical college


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: Rumen uncultured genome RUG336

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oenococcus sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: eye

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acidithiobacillus sp. M4-SHS-6

ncbi_submitter: Zhejiang Wanli University


ncbi_isolation_source: Caecum


ncbi_organism_name: Neisseria gonorrhoeae DGI2

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Faecalibacterium sp. I4-1-79

ncbi_submitter: AgResearch


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli BIDMC 83

ncbi_strain_identifiers: BIDMC 83


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1660

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: University of Verona, Italy


ncbi_isolation_source: Human vagina

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Arabiibacter massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Northwestern University


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Edible insect Bombyx mori

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Biopsy

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: mice gut

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: blood

ncbi_submitter: University of Pretoria


ncbi_country: Brazil:Santa Catarina

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-174

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-4c

ncbi_strain_identifiers: Hp P-4c

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Mycobacterium intermedium

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: forest soil

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Arachnia propionica

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Honduras

ncbi_isolation_source: wound

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Oklahoma

ncbi_organism_name: Bordetella bronchiseptica 7E71

ncbi_submitter: JCVI


ncbi_organism_name: Aminivibrio sp.

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: ATCC19606 assembly

ncbi_isolation_source: clinical sample

ncbi_submitter: LSHTM


ncbi_country: USA: NY

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0268R

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human urine

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 66 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Erwinia persicina

ncbi_submitter: INRAE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: swab

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 8

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Arizona State University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas fluorescens


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Ukraine: Kiev region

ncbi_isolation_source: maize rhizosphere

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_country: China: Huaian

ncbi_isolation_source: pig slaughterhouse

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_organism_name: Streptomyces sp. NPDC058770

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: Japan:Kyoto; Kameoka

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. NicSoilC5

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Hydromicrobium sp.

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Hydromicrobiaceae;g__Candidatus Hydromicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Hydromicrobiaceae;g__Candidatus Hydromicrobium;x__unclassified Candidatus Hydromicrobium;s__Candidatus Hydromicrobium sp.


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: BGI


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS030

ncbi_submitter: MD Anderson Cancer Center


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Photorhabdus sp. RM96S

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Aeromonas media

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: gachon university


ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: C;CMAD 2.2

ncbi_submitter: Universitas Gadjah Mada


ncbi_organism_name: bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: Ecuador: Quito

ncbi_isolation_source: liver abscess

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Gemmatimonadales bacterium UBA1138

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Mycolicibacterium agri

ncbi_submitter: San Raffaele Scientific Institute


ncbi_organism_name: Comamonas sp.


ncbi_country: Ireland

ncbi_isolation_source: milk powder

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: CGF

ncbi_submitter: Enze Hospital


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: NC

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59469F

ncbi_submitter: FDA


ncbi_isolation_source: faecal

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: SC


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Caecum


ncbi_country: USA: Georgia

ncbi_isolation_source: freshwater lake mesocosm spiked with pig9 feces day 7

ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Onireke


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California

ncbi_organism_name: Arthrobacter sp. SLBN-100

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_submitter: Center for Microbial Communities


ncbi_country: Uruguay: Conchillas; Colonia

ncbi_organism_name: Xanthomonas prunicola

ncbi_submitter: Facultad de Quimica, Universidad de la Republica


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_assembly_name: IMG-taxon 2524614673 annotated assembly

ncbi_organism_name: Streptomyces sp. PgraA7

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-392-07_S3_C2

ncbi_submitter: IGS


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Streptomyces viridosporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Latilactobacillus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Ralstonia thomasii

ncbi_submitter: LM-UGent


ncbi_country: Costa Rica

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: United Kingdom

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Haikou

ncbi_isolation_source: natural fermented noni juice

ncbi_organism_name: Acetobacter sp. AN02

ncbi_submitter: Hainan University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Chaska; MN

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_country: Netherlands

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae 2070108

ncbi_submitter: Academic Medical Center Amsterdam, The Netherlands


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China

ncbi_isolation_source: cecum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing agricultural university


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02728

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Wuhan

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: swine feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Division of Biomedical Food Research, National Institute of Health Sciences, NIHS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes UCI 47

ncbi_strain_identifiers: UCI 47

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: India: Madurai; Aravind Eye Hospital

ncbi_isolation_source: eye

ncbi_submitter: University of Toronto


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EBI


ncbi_isolation_source: pig gut metagenome


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo, Brazil


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: deep subsurface microcosm

ncbi_submitter: VTT Technical Research Centre of Finland Ltd


ncbi_organism_name: Pseudoalteromonas sp. SSDWG2

ncbi_submitter: Dongguk university


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Actinomadura sp. NPDC000929

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardia mikamii NBRC 108933

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia mikamii;x__Nocardia mikamii NBRC 108933


ncbi_organism_name: Alistipes senegalensis


ncbi_organism_name: Citricoccus nitrophenolicus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Arctic Ocean

ncbi_isolation_source: beach

ncbi_organism_name: Algibacter sp. L3A6

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG10_big_fil_rev_8_21_14_0_10_44_54


ncbi_isolation_source: bovine 14 month old female brain

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leiden University Medical Center


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Candidatus Wildermuthbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;x__unclassified Candidatus Wildermuthbacteria;s__Candidatus Wildermuthbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Marinovum sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Russia: Murmansk region

ncbi_organism_name: Lichenicoccus roseus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (large; >=63 micrometer filter)

ncbi_organism_name: Vibrio cyclitrophicus ZF255

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Brazil: Mato Grosso; Pantanal

ncbi_isolation_source: inner root

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal de Mato Grosso


ncbi_organism_name: Stenotrophomonas sp. A3_2

ncbi_submitter: Henan University of Science and Technology


ncbi_organism_name: bacterium


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Sichuan


ncbi_isolation_source: UCC Isolate

ncbi_organism_name: Providencia stuartii

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: MA

ncbi_submitter: Broad Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nonomuraea rubra

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab female ferret; 4 months old

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Colorado State University


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis UT0074


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Enterococcus sp. AZ165


ncbi_organism_name: Scopulibacillus daqui

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_isolation_source: cow carcass

ncbi_organism_name: Bacillus anthracis str. BF1

ncbi_submitter: Bundeswehr

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. BF1


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Argentina

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Candidatus Hydrogenedens sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__unclassified Candidatus Hydrogenedens;s__Candidatus Hydrogenedens sp.


ncbi_organism_name: Williamsia serinedens


ncbi_organism_name: Micromonospora chokoriensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Lautropia sp.

ncbi_submitter: Monash University


ncbi_country: Germany: Erlangen

ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: Robert Koch-Institut


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: China: Lincang city of Yunnan

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas alliivorans

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: Slovenia

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: India: Ankleshwar; Guajrat

ncbi_isolation_source: soil/sediment

ncbi_organism_name: Bacillus sp. AGSP2

ncbi_submitter: N.V. Patel College of Pure and Applied Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AGSP2


ncbi_organism_name: Nostoc sp. DedQUE05

ncbi_submitter: LANGEBIO


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Ohio

ncbi_organism_name: Bordetella hinzii OH87 BAL007II

ncbi_strain_identifiers: OH87 BAL007II

ncbi_submitter: JCVI


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: New York University


ncbi_country: France: Angers

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Paracoccus actinidiae

ncbi_submitter: Beijing Technology and Business University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF15-23LB

ncbi_submitter: BGI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Dorea longicatena

ncbi_submitter: EMG


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2681813513 annotated assembly

ncbi_organism_name: Phaeovulum vinaykumarii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N42450-SQ v1.0

ncbi_isolation_source: Chicken Breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA

ncbi_isolation_source: Final carcass

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Parabacteroides massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Bifidobacterium longum LL6991

ncbi_submitter: Hebrew University


ncbi_country: Venezuela

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lacticaseibacillus rhamnosus


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: hainan normol university


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Saccharicrinis sp. 156

ncbi_submitter: Shandong University at Weihai


ncbi_submitter: Universidad de Chile


ncbi_organism_name: Delftia sp. WSY_16

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Rennes


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_isolate: Acidobacteria sp. RBC074

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_strain_identifiers: Acidobacteria sp. RBC074

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human gut


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1559

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia: Hobart

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_organism_name: Thiomonas arsenitoxydans

ncbi_submitter: Genoscope CEA


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP70-1

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: EMG


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: biofilm of the red alga Chondrus crispus

ncbi_organism_name: Alienimonas chondri

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shenzhen University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus malodoratus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Nitratifractor sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Lentisphaerae bacterium ADurb.BinA184

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium ADurb.BinA184


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Candidatus Liptonbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Liptoniibacteriota;x__unclassified Candidatus Liptonbacteria;s__Candidatus Liptonbacteria bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Staphylococcus aureus M1460

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus aureus M1450


ncbi_country: Gambia: Basse Santa Su

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Wenzhou Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: IMG-taxon 2588253712 annotated assembly

ncbi_organism_name: Chryseobacterium sp. OV279

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: Max von Pettenkofer-Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. palearctica;x__Yersinia enterocolitica subsp. palearctica 647/5307


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Opitutia bacterium UBA4424

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA4424


ncbi_country: France

ncbi_isolation_source: tooth abscess

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 175 (4-3405184)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 175 (4-3405184)


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Competibacteraceae bacterium UBA2368

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Competibacteraceae bacterium UBA2368


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud del Peru


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Leptotrichia shahii


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Faecalibacterium sp. I3-3-33

ncbi_submitter: AgResearch


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine