ncbi_country: Italy

ncbi_isolation_source: purulent material

ncbi_organism_name: Staphylococcus delphini

ncbi_strain_identifiers: Heidy

ncbi_submitter: CNR Staphylocoques


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Canada: Gault Nature Reserve

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


gtdb_representative: f

ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces narbonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-418-P06

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Scatoplasma merdavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__;g__Candidatus Scatoplasma;s__Candidatus Scatoplasma merdavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Scatoplasma;s__Candidatus Scatoplasma merdavium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_organism_name: Prevotella histicola

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at Dallas


ncbi_country: USA

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Yangjiang

ncbi_submitter: South China Agricultural University


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Roseibium album

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli SHECO002

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Vibrio vulnificus CMCP6

ncbi_submitter: Chonnam Univ.


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: chicken fecal

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: MD

ncbi_isolation_source: environment

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_type_species_of_genus: t

ncbi_isolation_source: wound; ankle

ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_country: China: Shanxi Province

ncbi_isolation_source: respiratory tract of healthy individual

ncbi_organism_name: Corynebacterium argentoratense

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- Umea1p1_bin-613

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: Pacific Ocean: Eastern Lau Spreading Centre

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Thermosulfuriphilus ammonigenes

ncbi_refseq_category: reference genome

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Prochlorococcus sp. MIT 0703

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC007910

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bacillus sp. Bva_UNVM-123

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Bva_UNVM-123


ncbi_organism_name: Bacillus sp. XT-4

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. XT-4


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 1 day

ncbi_submitter: Shantou University


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_submitter: Aalborg University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Pantanalinema rosaneae CENA516

ncbi_submitter: Center for Nuclear Energy in Agriculture (CENA) -University of Sao Paulo (USP)


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonomuraea thailandensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG12065

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.


ncbi_isolation_source: blood from neonate

ncbi_organism_name: Streptococcus agalactiae COH1

ncbi_submitter: University of Colorado - AMC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Minnesota

ncbi_isolation_source: Soudan mine sediment

ncbi_organism_name: Martelella sp. NC20

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Chromosome

ncbi_organism_name: Ralstonia solanacearum CMR15

ncbi_submitter: CEA-Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum CMR15


ncbi_country: China: Yushu

ncbi_isolation_source: China: Tibet Plateau; Qinghai

ncbi_organism_name: Vagococcus xieshaowenii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: infant

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Naval Research Laboratory


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;sb__Prochlorococcus marinus subsp. pastoris;x__Prochlorococcus marinus subsp. pastoris str. CCMP1986


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Blastomonas sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Micalis Institute


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Proteus mirabilis


ncbi_country: India

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteriovoracaceae bacterium UBA4207

ncbi_submitter: University of Queensland


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter pittii


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: blood

ncbi_submitter: Children's Mercy Kansas City


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Aalborg University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Research Institute of Green Science and Technology, Shizuoka University


ncbi_organism_name: Thermus sp.

ncbi_submitter: Saraswanti Genomics Institute


ncbi_organism_name: Yersinia vastinensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: China: Wuhan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Ensifer sp. Root558

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Herbarium

ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Ohio State university


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Drouetiella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Bacillus pseudomycoides

ncbi_strain_identifiers: Flugge 10206

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Malaysia: Johor

ncbi_isolation_source: river in Endau-Rompin National Park

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: University of Malaya


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_submitter: WRAIR-Africa


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin09

ncbi_submitter: JAMSTEC


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Fructilactobacillus frigidiflavus

ncbi_submitter: University of Alberta


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Stirling


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Serratia sp. CY55739

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY55739


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Nitrospina sp.


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Vulcanococcus sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Wujingus californicus

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wujingus;s__Candidatus Wujingus californicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wujingus;s__Candidatus Wujingus californicus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12575

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudoramibacter alactolyticus

ncbi_submitter: EMG


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 47

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Methylococcus sp.

ncbi_strain_identifiers: MAG 47

ncbi_submitter: WHOI


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: University of Queensland


ncbi_country: China: Shanghai

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_assembly_name: Salmonella enterica CVM N48704 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Chicken Thighs

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: New Zealand: Hastings; Hawke s Bay

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. actinidifoliorum;x__Pseudomonas syringae pv. actinidifoliorum ICMP 18803


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_isolation_source: lake water

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_submitter: Cornell University


ncbi_organism_name: Nocardia spumae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Colon


ncbi_country: Croatia

ncbi_isolation_source: Cheese

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Helsinki University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallimonas intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinavium


ncbi_assembly_name: Rumen uncultured genome RUG13689

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NY

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR1813

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Pandoraea nosoerga

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Svalbard

ncbi_isolation_source: seawater

ncbi_organism_name: Psychrobacter sp. NG254

ncbi_submitter: Shandong University


ncbi_country: USA: IL

ncbi_isolation_source: joint cavity (Equus ferus caballus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microrganisms and Cell Cultures


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A8

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Colombia: Medellin

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: EMG


ncbi_country: Tunisia

ncbi_isolation_source: water

ncbi_organism_name: Shewanella sp. 10B

ncbi_submitter: ANSES


ncbi_country: USA: Maryland

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_isolation_source: laboratory culture

ncbi_organism_name: Wolbachia endosymbiont of Delia radicum

ncbi_submitter: German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig


ncbi_country: USA: Madison; WI

ncbi_isolation_source: Conversion residue fermenting bioreactor

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Taiwan

ncbi_submitter: national health research institutes


ncbi_country: Mediterranean Sea

ncbi_organism_name: Rhizobiales bacterium TMED162

ncbi_submitter: University of Southern California


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus gallinarum


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: swab

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Cyanobacteria bacterium T3Sed10_304

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium T3Sed10_304


ncbi_isolation_source: Nose

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: SC


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Xanthobacter sp. 126

ncbi_submitter: JGI


ncbi_assembly_name: freshwater MAG --- UppL3_bin-119

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Universidad del Desarrollo


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Acutalibacter stercoravium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: uncultured Armatimonadales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Waterloo


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: Rumen uncultured genome RUG12595

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: China

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium H4

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium H4


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Psychrobacter immobilis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: blood

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Ningbo First Hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Waseca; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_assembly_name: freshwater MAG --- Loc081215-5m_bin-1120

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7120

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Pseudomonas arsenicoxydans

ncbi_submitter: Universite Laval


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_organism_name: Streptomyces javensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Japan

ncbi_organism_name: Roseivirga echinicomitans

ncbi_submitter: FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_isolation_source: porcine

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Guangxi University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Pengzhenrongella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Yugoslavia

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_organism_name: Sphingobium sp. 10 DY56-G10

ncbi_submitter: Second Institute of Oceanography


ncbi_organism_name: Rhodococcus wratislaviensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: South Carolina

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Instituto de Higiene


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Fimenecus stercoravium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus stercoravium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;s__Candidatus Fimenecus stercoravium


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: AMPLIFY consortium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWF1_36_78


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae 361_1301

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: Portugal: Vouga estuary; Ria de Aveiro; So Jacinto

ncbi_isolation_source: mesotidal zone; benthic

ncbi_organism_name: Coleofasciculus sp. LEGE 07092

ncbi_submitter: CIIMAR


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Trach tube swab

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Ausgem


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Switzerland

ncbi_organism_name: Mycobacterium helveticum

ncbi_submitter: IRCCS San Raffaele


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: CSF

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 10-1047


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_country: China: Beijing

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M13403

ncbi_submitter: Broad Institute


ncbi_country: Russia: Moscow

ncbi_submitter: RCPCM


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Nocardia sp.

ncbi_submitter: Colorado State University


ncbi_country: New Zealand: Tapuata Stream

ncbi_isolation_source: water

ncbi_submitter: Massey University


ncbi_country: Ghana: Accra

ncbi_isolation_source: sediment; water and sewage treatment plant

ncbi_submitter: University of Ghana


ncbi_organism_name: uncultured candidatus Porisulfidus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__Chromatiales incertae sedis;x__Candidatus Porisulfidus;x__environmental samples;s__uncultured candidatus Porisulfidus sp.


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Kitasatospora sp. NPDC096077

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Algeria: Boufarik; Blida

ncbi_isolation_source: Public distribution water

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Pasteur Institute of Algeria


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Prevotella histicola

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Yonathbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;x__unclassified Candidatus Yonathbacteria;s__Candidatus Yonathbacteria bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of New Mexico Health Sciences Center


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_submitter: Kenya Medical Reserach Institute


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The Ohio State University


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: ProteonPharmaceuticals


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Deferribacteres bacterium


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Food processing environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche Togo Rosati


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: jejunum

ncbi_organism_name: Limosilactobacillus balticus

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_submitter: University of Auckland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Omnitrophica WOR_2 bacterium GWF2_38_59

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium GWF2_38_59


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-4287

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: BILS


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Salmonella sp. M113

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Denmark: Gentofte

ncbi_isolation_source: grassland soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. wkB171

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: anaerobic sludge

ncbi_organism_name: Tepidanaerobacter syntrophicus

ncbi_strain_identifiers: JL

ncbi_submitter: AIST


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Peribacillus muralis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10219D

ncbi_submitter: University of Exeter


ncbi_assembly_name: Rumen uncultured genome RUG10492

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: AAFC


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Geopsychrobacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Switzerland

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_organism_name: Escherichia coli


ncbi_country: Bangladesh

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0012

ncbi_submitter: Broad Institute


ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonas acidaminovorans

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: New York state

ncbi_isolation_source: Sifter powder

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_organism_name: Nonomuraea sp. NBC_00507

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA5950

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The forth military medical university


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mixta calida

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-924

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Rhizobium sp. RCC_161_2

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Pseudomonas reidholzensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Venezuela: Distrito Capital; Municipio Libertador; Caracas

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Denmark

ncbi_isolation_source: not known


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: South Korea: Gyeonggi-do; Yeoju-si; Daesin-myeon

ncbi_isolation_source: Surface layer of rice grains

ncbi_organism_name: Spirosoma oryzicola

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Clostridium tetani ATCC 454

ncbi_strain_identifiers: ATCC 454

ncbi_submitter: Perelman School of Medicine, University of Penn.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium tetani;x__Clostridium tetani ATCC 454


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_country: USA: Unknown

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Michigan


ncbi_country: Germany

ncbi_isolation_source: gut

ncbi_strain_identifiers: Isolate-001 (NCI)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-001 (NCI)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Pakistan

ncbi_isolation_source: stool from child

ncbi_submitter: Lurie Children's/Northwestern


ncbi_country: Brazil: Rio Grande do Sul; Veranopolis

ncbi_isolation_source: petioles

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_strain_identifiers: RAAR14 plum327

ncbi_submitter: University of California Berkeley


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Zobellia laminariae

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: South Korea

ncbi_isolation_source: Fermented Kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Handong Global University


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_isolate: LUBLD50 7a

ncbi_isolation_source: Cultured European bass; Dicentrarchus labrax

ncbi_organism_name: Pseudidiomarina piscicola

ncbi_strain_identifiers: LUBLD50 7a;CECT 9734

ncbi_submitter: UVEG


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- B12_bin-2784

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Oxalobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Dongda River estuary; Yunnan

ncbi_organism_name: Azospirillum aestuarii

ncbi_strain_identifiers: YIM DDC1

ncbi_submitter: Yunnan University


ncbi_organism_name: Bavariicoccus seileri


ncbi_organism_name: Brachybacterium alimentarium

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Saccharopolyspora shandongensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Streptomyces anulatus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Kilianstollen; Marsberg

ncbi_isolation_source: biofilm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Aristaeellaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: France

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: SC


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: skin tuna

ncbi_organism_name: Photobacterium kishitanii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lujinxingia vulgaris

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: China: Jilin

ncbi_organism_name: Gilliamella sp. W8128

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: feces of male piglet

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Rickettsia prowazekii str. Rp22

ncbi_submitter: Unite des Rickettsies, CNRS, Marseille


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Kocuria sp. CPCC 205263

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. CPCC 205263


ncbi_assembly_name: Rumen uncultured genome RUG10688

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: USA: FL

ncbi_isolation_source: Sponge

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Vibrio sp. Vb2853

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Photorhabdus bodei

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA6955


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Luteimonas sp. TWI1415

ncbi_submitter: University of Technology Sydney


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: CFE, University of Coimbra


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. A4002

ncbi_submitter: Wageningen University & Research


ncbi_country: Antarctica

ncbi_organism_name: Variovorax sp. PAMC 28711

ncbi_submitter: Korea Polar Research Institute


ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB7_3xG_012

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bifidobacterium magnum DSM 20222

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_isolation_source: Soil

ncbi_organism_name: Mycobacterium sp. MS1601

ncbi_submitter: Biotechnology department, Lund Universit


ncbi_country: USA: WA

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Aneurinibacillus migulanus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Zurich


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Singapore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: Nodule swab

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: ANSES


ncbi_assembly_name: IMG-taxon 2667527229 annotated assembly

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: Samara

ncbi_organism_name: Chryseobacterium mucoviscidosis

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. FJAT-42376

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-42376


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Companilactobacillus farciminis

ncbi_submitter: ARSOA Research & Development center, AOB Keioh Group Corporation


ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: USA: Ohio; Old Woman Creek NERR

ncbi_isolation_source: freshwater wetland soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Staphylococcus aureus VET0271R

ncbi_submitter: Broad Institute


ncbi_country: Italy: Aosta

ncbi_isolation_source: cheese

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Canada: MB

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: China: Zhejiang

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Lebanon

ncbi_isolation_source: environmental

ncbi_submitter: Lebanese American University


ncbi_isolation_source: Blood

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: LZW

ncbi_submitter: Sichuan University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Foot

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_strain_identifiers: KCOM 2804

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_3 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bradyrhizobium sp. AZCC 2262

ncbi_strain_identifiers: AZCC 2262

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: Coastal surface sea water

ncbi_organism_name: Ruegeria sp. A3M17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: potato-based retail food product

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_country: Belgium

ncbi_organism_name: Phyllobacterium myrsinacearum

ncbi_submitter: Chinese Academy of Forestry


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: Enterococcosel

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Rivularia sp. (in: cyanobacteria)

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. (in: cyanobacteria)


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides uniformis


ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Sulfurihydrogenibium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Shanghai

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghaishinongyekexueyuan


ncbi_organism_name: Pseudoalteromonas carrageenovora

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: Canada: Toronto

ncbi_isolation_source: cheese

ncbi_submitter: Public Health Ontario


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: Italy: Verona

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. SMB2

ncbi_submitter: University of Bologna


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: India: Assam

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Pseudoclavibacter sp. RFBI4

ncbi_submitter: Oregon State University


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_isolation_source: red alga

ncbi_organism_name: Thalassomonas sp. M1454

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia glumae

ncbi_strain_identifiers: NCPPB 3923

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Pacific Ocean: Eastern North Pacific; ODP site 1244

ncbi_isolation_source: methane hydrate marine sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Iran

ncbi_isolation_source: scare

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Copenhagen


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Spiribacter onubensis

ncbi_submitter: University of Sevilla, Spain


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD169

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Thermoleophilaceae bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lysinibacillus sp. UBA5994

ncbi_submitter: University of Queensland


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: USDA-ARS


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Undibacterium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: Caecum

ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Ireland

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: Environmental (soil)

ncbi_organism_name: Pseudomonas aeruginosa 62

ncbi_submitter: Broad Institute


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Zhejiang

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Serbia: Milicinica

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_submitter: University of Exeter


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8710

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: hadal trench sea water

ncbi_organism_name: Alteromonadaceae bacterium A_SAG4

ncbi_submitter: Chinese university of Hong Kong


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Streptomyces sp. NRRL WC-3725

ncbi_strain_identifiers: NRRL WC-3725

ncbi_submitter: University of Illinois


ncbi_organism_name: Turicimonas muris

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Weizmannia sp. CD-2023

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Nigeria

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Italy: Bologna

ncbi_isolation_source: water

ncbi_organism_name: Legionella sp. 31fI33

ncbi_submitter: University of Bologna


ncbi_country: Greece: Crete

ncbi_isolation_source: root

ncbi_organism_name: Glutamicibacter halophytocola


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_J_8

ncbi_organism_name: Iningainema sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2011C-3655


ncbi_country: China: Nanning

ncbi_isolation_source: Tissue

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Guangxi Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M63

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Switzerland

ncbi_isolation_source: clinical sample

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Proximal colon


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Jatrophihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Fodinicurvata halophila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Zunyi Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The First Affiliated Hospital of Yunnan University of Traditional Chinese Medicine


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Georgenia alba