ncbi_organism_name: Streptococcus pneumoniae A026

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


gtdb_representative: t

ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: India: Leh

ncbi_isolation_source: water

ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: National Bureau of Agricultrally Important Microorganisms


ncbi_assembly_name: Rumen uncultured genome RUG13016

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: China

ncbi_isolation_source: Hepatobiliary surgery

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Denmark

ncbi_isolation_source: medicine capsule

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 101


ncbi_country: China: Beihai city; Guangxi Province

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Rhodococcus sp. BH2-1

ncbi_submitter: Shantou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BH2-1


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_refseq_category: reference genome

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy: d__Bacteria;p__Bacteroidota;c__;o__Candidatus Sulfidibacteriales;f__;g__Candidatus Sulfidibacterium;s__Candidatus Sulfidibacterium hydrothermale

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__Bacteroidota incertae sedis;o__Candidatus Sulfidibacteriales;g__Candidatus Sulfidibacterium;s__Candidatus Sulfidibacterium hydrothermale


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_submitter: University of Science and Technology of China


ncbi_country: China: SiChuan

ncbi_isolation_source: blood

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: USA: WI

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Comenius University Science Park


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hydrogenothermaceae bacterium

ncbi_submitter: Portland State University


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: China: Guangxi

ncbi_organism_name: Nocardia otitidiscaviarum

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Clostridiales bacterium GWD2_32_59

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_country: USA: California

ncbi_organism_name: Campylobacter hyointestinalis subsp. lawsonii

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Canada: Calgary; Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7041

ncbi_submitter: University of Queensland


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolate: Rhodospirillaceae sp. RBC011

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_strain_identifiers: Rhodospirillaceae sp. RBC011

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: Essential oils isolation

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CAR

ncbi_submitter: Facultad de Veterinaria, Instituto Agroalimentario de Aragon (IA2)


ncbi_submitter: ANSES Ploufragan


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6509

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Pyramidobacter piscolens

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


gtdb_type_species_of_genus: t

ncbi_organism_name: Glaesserella parasuis

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: China: Guangdong province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli KTE4

ncbi_submitter: Broad Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India: Gujarat

ncbi_isolation_source: desert soil

ncbi_organism_name: Pontibacter deserti

ncbi_submitter: Ningbo University


ncbi_organism_name: Serratia odorifera

ncbi_strain_identifiers: KCTC 2937

ncbi_submitter: ChunLab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Tibeticola sp.

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: USA: Kansas

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora sp. NPDC049044

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Carson City; NV

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_isolation_source: human gut


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gordonia sp. NPDC062954

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. NPDC062954


ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: UIUC


ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: freshwater MAG --- MJ120813B_bin-214

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Scatenecus faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Scatenecus;s__Candidatus Scatenecus faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Scatenecus;s__Candidatus Scatenecus faecavium


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: CAU


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. 275

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 275


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Portugal

ncbi_organism_name: Dickeya solani

ncbi_submitter: Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University of Gdansk


ncbi_country: India: Chennai

ncbi_isolation_source: Seeds

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Switzerland

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Kitasatospora indigofera

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: United Kingdom Health Security Agency


ncbi_isolation_source: paddy field soil

ncbi_organism_name: Anaeromyxobacter paludicola

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: uncultured Acholeplasmataceae bacterium


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Pseudomonas migulae NBRC 103157

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas migulae;x__Pseudomonas migulae NBRC 103157


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-1462

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Nocardioides ganghwensis

ncbi_submitter: China CDC


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1903

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Geothermal drilling

ncbi_organism_name: Aeribacillus pallidus

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: Rumen uncultured genome RUG13149

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: India: Kolkata

ncbi_isolation_source: Blood sample from neonates

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_assembly_name: IMG-taxon 2616645037 annotated assembly

ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: Agroscope


ncbi_assembly_name: Rumen uncultured genome RUG10472

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus asini

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Pandoraea sp.

ncbi_submitter: University of Oklahoma


ncbi_assembly_name: IMG-taxon 2602042110 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_assembly_level: Chromosome

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Hangzhou Nuclear Xinjian Biopharmaceutical (Group) Co., Ltd


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lasalocidi

ncbi_submitter: Zoetis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. NPDC090208

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Blautia sp. AF25-12LB


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: polluted soil sample

ncbi_organism_name: Paenalcaligenes niemegkensis

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Viet Nam

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Chile: Maipo

ncbi_isolation_source: Chilean wine process

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Universidad de Chile


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_country: Philippines

ncbi_isolation_source: lichen thallus

ncbi_organism_name: Rhizonema sp. PD38

ncbi_submitter: Duke University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_submitter: Purdue University


ncbi_organism_name: Pseudobutyrivibrio sp. MD2005

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia: Kabardino-Balkaria

ncbi_organism_name: Yersinia pestis 2944

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 2944


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: marine

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of Queensland


ncbi_country: Bangladesh: Mymensingh

ncbi_isolation_source: Raw milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_isolation_source: microbial mat

ncbi_organism_name: Cytophagales bacterium


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Mucilaginibacter sp. UYP25


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Korea: Sunchang

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_37_13b


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 196-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Phycicoccus sp. Root101

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Dangqiong Co in Northern Tibetan Plateau

ncbi_isolation_source: saline lake

ncbi_organism_name: Nocardiopsis sp. N85

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Sandarakinorhabdus limnophila

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shinshu university hospital


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0916

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Alcaligenaceae bacterium


ncbi_organism_name: uncultured Desulfocucumis sp.


ncbi_assembly_name: freshwater MAG --- T8-5_bin-086

ncbi_organism_name: uncultured Ferrovum sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Proteobacteria bacterium UBA4457

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA4457


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- AM3_bin-1245

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: BGI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: China

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: Hebei University


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_51_35


ncbi_country: USA: International Space Station

ncbi_isolation_source: Mineral Grit embedded in adhesive paper 3

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Staphylococcus epidermidis


ncbi_country: China: Huhhot

ncbi_organism_name: Sphingomonas crusticola

ncbi_submitter: inner mongolia aricultual university


ncbi_country: India:Cochin; Munambam Fishing Harbour

ncbi_isolation_source: crab

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Spain: Leon

ncbi_isolation_source: food-contact surface

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbiome Applications for Sustainable food systems through Technologies and EnteRprise


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AM22-20AC

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia: South Australia

ncbi_isolation_source: Barmera; South Australia

ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4889

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: stool sample from 51 year old female with stage 2 colorectal cancer

ncbi_organism_name: Burkholderia sp. K4410.MGS-135

ncbi_submitter: The Mayo Clinic


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Galway


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: North Dakota; Cottonwood Lake Study Area

ncbi_isolation_source: Prairie Pothole Region wetland sediments

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Ohio State University


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Comamonadaceae bacterium PBBC2

ncbi_submitter: CNRS-AMU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Legionella massiliensis

ncbi_strain_identifiers: LegA

ncbi_submitter: URMITE


ncbi_isolate: Klebsiella pneumoniae

ncbi_isolation_source: Human

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: Instituto de Salud Carlos III


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Beijing city

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_submitter: US Meat Animal Research Center


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 1270

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Pseudoflavonifractor sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_country: South Africa: Durban

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI


ncbi_organism_name: Luteococcus sp. Sow4_B9

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sphaerochaetaceae bacterium


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-474-04_S1_C2

ncbi_submitter: IGS


ncbi_organism_name: Paenibacillus sp. FSL K6-0276

ncbi_submitter: Penn State


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium EnGen0319

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_isolation_source: nodule

ncbi_organism_name: Mesorhizobium atlanticum

ncbi_strain_identifiers: CNPSo 3140

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes senegalensis


ncbi_organism_name: Anaerobacillus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA7504

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Ngwelezana Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0134


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Rodentibacter trehalosifermentans

ncbi_submitter: University of Copenhagen


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Universite de Lyon


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Desulfovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolate: Pelagimonas varians SH4-1

ncbi_organism_name: Pelagimonas varians

ncbi_strain_identifiers: Pelagimonas varians SH4-1

ncbi_submitter: Helmholtz Institute for Functional Marine Biodiversity


ncbi_submitter: Kyoto University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Streptomyces sp. NPDC020480


ncbi_organism_name: Salmonella sp. NW654

ncbi_submitter: Sichuan University


ncbi_isolate: AOP7_D2_surf _bin _8

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP7_D2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Dongia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Lacticaseibacillus baoqingensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: SPRUCE 630

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 630

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey: Sivas

ncbi_isolation_source: Throat culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_assembly_name: freshwater MAG --- VK_bin-2715

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Taiwan

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Halomonas sp. CH40

ncbi_submitter: Qinghai University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardia nova SH22a

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Erwinia sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: France: Lyon

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of California, Berkeley


ncbi_country: Nigeria: Sokkoto State;Ilella

ncbi_isolation_source: ant gut

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Jos


ncbi_isolation_source: Seawater

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis UT0119

ncbi_submitter: Broad Institute


ncbi_organism_name: Gallibacterium salpingitidis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Salmonella enterica CVM N29310-SQ v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stable manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fusobacteriia bacterium UBA816

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Cryobacterium sp. 10I5

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Germany

ncbi_isolation_source: blood culture

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_country: Spain

ncbi_isolation_source: rectal feces

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: URAGAN


ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: USA: Colorado

ncbi_organism_name: Haematobacter genomosp. 1

ncbi_submitter: CDC


ncbi_isolation_source: burned soil

ncbi_organism_name: Variovorax sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gulosibacter massiliensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Litoribaculum gwangyangense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Flavonifractor plautii


ncbi_country: China: Sichuan

ncbi_isolation_source: patient with infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Peking University People's Hospital


ncbi_country: Cameroon

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Arachnia sp.


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0106

ncbi_submitter: Broad Institute


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Oligoflexus sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_assembly_name: freshwater MAG --- D4_bin-045

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oligoflexia bacterium

ncbi_submitter: EMG


ncbi_country: Italy: Bresso; MI

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: China

ncbi_isolation_source: culture of Enterococcus faecium CGMCC 1.2136 that spent 17 days in space aboard the Shenzhou 8 spacecraft

ncbi_organism_name: Enterococcus faecium LCT-EF20

ncbi_submitter: BGI-shenzhen


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P31C

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P31C


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Non-ICU

ncbi_organism_name: Staphylococcus aureus M0415

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Ignavibacteria bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: China: Gaungdong

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-311

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: new MAG-311

ncbi_submitter: Micoorganism


ncbi_country: USA: Honolulu; HI

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Tateyamaria sp. ANG-S1

ncbi_submitter: University of Connecticut


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Procapra picticaudata

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: uncultured delta proteobacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pedobacter sp. AW1-32

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Mycoplasma sp. 4F

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Methylophaga aminisulfidivorans

ncbi_submitter: Ocean University of China


ncbi_assembly_name: Rumen uncultured genome RUG13463

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microcoleus sp. Aus8_D4

ncbi_submitter: Palacky University Olomouc


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_submitter: USDA


ncbi_assembly_name: Rumen uncultured genome RUG10020


ncbi_country: Canada: BC

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_assembly_name: Rumen uncultured genome RUG10053


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nonomuraea ferruginea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea: Jinju

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Belgium

ncbi_isolate: abscess/wound isolate

ncbi_isolation_source: biological

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Antwerpen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Streptomyces ipomoeae

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas sp. HY13-MNA-CIBAN-0226

ncbi_submitter: University of Florence


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Variovorax ginsengisoli

ncbi_submitter: Universite Laval


ncbi_country: Brazil: Italva; Rio de Janeiro

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: AgBio


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Candidatus Xenobium occultum

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Vulcanimicrobiota;c__Candidatus Xenobia;o__Candidatus Xenobiales;f__Candidatus Xenobiaceae;g__Candidatus Xenobium;s__Candidatus Xenobium occultum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;o__Candidatus Xenobiales;f__Candidatus Xenobiaceae;g__Candidatus Xenobium;s__Candidatus Xenobium occultum


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: South Africa: Stev Bieko Academic hospital

ncbi_strain_identifiers: Staphylococcous aureus

ncbi_submitter: University of Pretoria


ncbi_country: China: Anhui

ncbi_isolation_source: Purulent secretion

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: OH

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: IMG-taxon 2617270741 annotated assembly

ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_strain_identifiers: CCBAU 10071

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 219

ncbi_organism_name: Staphylococcus devriesei

ncbi_strain_identifiers: SNUC 4438

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_organism_name: Erwinia plantamica

ncbi_submitter: Organic park LLC


ncbi_country: Spain: Marismas Odiel; Huelva

ncbi_isolation_source: saline soil

ncbi_organism_name: Pseudidiomarina terrestris

ncbi_submitter: University of Sevilla, Spain


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2895

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC058142

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: USUHS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: USA: Alaska

ncbi_isolation_source: permafrost ice wedge

ncbi_organism_name: Tomitella biformata

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Northwest A&F Universit


ncbi_organism_name: Pseudomonas sp. 65/3-MNA-CIBAN-0223

ncbi_submitter: University of Florence


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2657245719 annotated assembly

ncbi_organism_name: Streptomyces sp. DfronAA-171

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB NOVA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_submitter: national health research institutes


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 488


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_country: Australia: Blackall

ncbi_isolation_source: isolated from red microbial mats (66 degrees centigrade) from a bore well (RN 17263) runoff channel

ncbi_organism_name: Thermovenabulum gondwanense

ncbi_submitter: Griffith University


ncbi_organism_name: Candidatus Micrarchaeia archaeon

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;p__Candidatus Micrarchaeota;c__Candidatus Micrarchaeia;x__unclassified Candidatus Micrarchaeia;s__Candidatus Micrarchaeia archaeon


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kueneniibacteriota;s__Candidatus Kuenenbacteria bacterium RIFCSPHIGHO2_02_FULL_39_13


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- LJ-3-15m_bin-0034

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_submitter: University of Galway


ncbi_organism_name: Vibrio natriegens

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Italy: Roma

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Camerino


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Chinese Academy of Sciences


ncbi_submitter: University of Regina


ncbi_isolation_source: quail

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1515

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Germany

ncbi_isolation_source: Otitis

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: swine waste-corn fermentation

ncbi_submitter: Kyungpook National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Amylolactobacillus;s__Amylolactobacillus amylophilus;x__Amylolactobacillus amylophilus DSM 20533 = JCM 1125


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Pediococcus damnosus

ncbi_strain_identifiers: NBRC 3889

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Paracoccus sp. R12_1

ncbi_submitter: University of Konstanz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. R12_1


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_country: China: Beijing

ncbi_organism_name: Massiliimalia timonensis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2755

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2755


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Flavobacterium sp. 38-13

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: ZCS

ncbi_submitter: Enze Hospital


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Empedobacter sp. UBA7620

ncbi_submitter: University of Queensland


ncbi_country: USA: Western Washington State; Puget Sound

ncbi_isolation_source: plant roots

ncbi_organism_name: Pseudomonas sp. PD9R


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Aarhus University


ncbi_country: Russia: Taman Peninsula

ncbi_isolation_source: Mud from terrestrial mud volcano

ncbi_organism_name: Sedimenticola hydrogenitrophicus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Schaalia hyovaginalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rothia dentocariosa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: animal

ncbi_organism_name: Bartonella sp. B1098

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Netherlands

ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Radboud University


ncbi_country: China: Shaanxi; Xi an; Zhouzhi

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU073

ncbi_submitter: Technical University of Denmark


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Aeromicrobium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Belgium

ncbi_isolation_source: raw milk

ncbi_organism_name: Pallidibacillus thermolactis

ncbi_submitter: Korea Institute of Ocean Science & Technology


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Aeromonas veronii AMC35

ncbi_submitter: Broad Institute


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 24

ncbi_submitter: University of Siena


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_country: India: Vellore

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium diphtheriae subsp. lausannense

ncbi_submitter: CMC, Vellore


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020052980


ncbi_organism_name: Macrococcus psychrotolerans

ncbi_submitter: Masaryk University, Faculty of Science


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: Severe Trauma Site

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Dyadobacter sp. BE32

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Mangrove soil

ncbi_organism_name: Micromonospora maritima

ncbi_submitter: Centre for Industrial Biotechnology Studies


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: St. Olav164

ncbi_submitter: NTNU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Italy: Perugia

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella sp. PL877

ncbi_submitter: University of Perugia


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: University of Minnesota Duluth

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA2169

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA2169


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus sp. AtDRG31

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AtDRG31


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China:Yunnan province; Hehua hot spring in Tengchong

ncbi_isolation_source: hot spring

ncbi_organism_name: Caldimonas caldifontis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CAAS


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas coleopterorum

ncbi_submitter: INRAE


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: New Zealand

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mesorhizobium loti R88b

ncbi_submitter: University of Otago


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Rikenella sp.


ncbi_submitter: Advanced Water and Environmental Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_assembly_name: freshwater MAG --- AM_bin-3298

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP3_A1_surf _bin _7

ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_strain_identifiers: AOP3_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Chryseomicrobium palamuruense

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactobacillus melliventris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: Rumen uncultured genome RUG14246

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for medical research


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Peru: San Camilo; Ica

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium icense

ncbi_strain_identifiers: LMTR 13

ncbi_submitter: Universidad Nacional Agraria La Molina


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_submitter: Cornell University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Russia: Tuva

ncbi_organism_name: Yersinia pestis

ncbi_submitter: SRCAMB


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: France

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: envrionmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Sanigen


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: South China Agricultural University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Xiapu

ncbi_isolation_source: Aquaculture pond sediment

ncbi_organism_name: Qipengyuania xiapuensis

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: United Kingdom

ncbi_organism_name: Chromobacterium subtsugae

ncbi_submitter: University of Malaya


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue