ncbi_submitter: Universitaetsklinikum Freiburg


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_level: Contig

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: t

ncbi_organism_name: uncultured Oligoflexales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Dokdonella soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin36

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: GDC bin36

ncbi_submitter: Monash University


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Maribacter sp. 2304DJ31-5

ncbi_submitter: Hannam University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Pantoea sp. K13

ncbi_submitter: University os Silesia in Katowice


ncbi_organism_name: Propioniciclava sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: UIUC


ncbi_assembly_level: Complete Genome

ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Caecum


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptomyces vastus

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Taiwan

ncbi_submitter: national health research institutes


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Campbellbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;x__unclassified Candidatus Campbellbacteria;s__Candidatus Campbellbacteria bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_country: Belgium: Namur

ncbi_isolation_source: Hepato/biliary

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cliniques Universitaires Saint-Luc


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3180

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Argentina

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Austria

ncbi_isolation_source: meat production plant

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus SCLE6040

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: root rhizosphere

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Plant and Microbe Interactions, School of Agriculture and Food Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: NHS Scotland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: UC Davis


ncbi_organism_name: Staphylococcus aureus H75423


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC005878

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S153

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S153


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_assembly_level: Chromosome

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: N.F.Gamaleya Research Center for Epidemiology and Microbiology


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Rhodobacterales bacterium 32-66-7


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Candidatus Coproplasma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__unclassified Candidatus Coproplasma;s__Candidatus Coproplasma sp.


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 413

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 3453

ncbi_submitter: University of Calgary


ncbi_assembly_name: IMG-taxon 2739368069 annotated assembly

ncbi_organism_name: Streptomyces sp. TLI_55

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain

ncbi_isolation_source: nasal swab

ncbi_organism_name: Moraxella porci

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Mycoplasmatales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_strain_identifiers: NRRL B-591

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Germany: Greifswald

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_assembly_name: IMG-taxon 2667527438 annotated assembly

ncbi_organism_name: Saccharopolyspora kobensis

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA:New York; BronxPark


ncbi_country: Malaysia: Ulu Slim; Perak

ncbi_isolation_source: hot spring

ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: rectal swab

ncbi_submitter: MIT


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0351

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Qinghai

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Germany

ncbi_isolation_source: cell culture

ncbi_submitter: Technical University of Munich


ncbi_country: Denmark

ncbi_organism_name: Shewanella hafniensis

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile

ncbi_organism_name: Staphylococcus aureus DAR5870


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Central Institute of Fisheries Technology, Cochin


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas media

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Sorangium sp. So ce1097

ncbi_strain_identifiers: So ce1097

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1097


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Barnesiella intestinihominis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Hunan Agricultural University


ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11942

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Emmental

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD17615

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Streptomyces sp. 3212.3

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: De novo assembly of KCRI isolate R0004_110LF

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: USA: WI

ncbi_isolation_source: Cervix

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: MidWest; turkey breeder farm 18

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1550


ncbi_organism_name: Leminorella grimontii

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Cellulomonas fimi

ncbi_submitter: Maharshi Dayanand University


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: Streptomyces sp. ME02-6978a

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Norway: Olso

ncbi_isolation_source: tracheal secretions

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Adam Heikal's shared submissions


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Zhejiang Province

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Methylococcaceae bacterium UBA975

ncbi_submitter: University of Queensland


ncbi_organism_name: Salinimicrobium sp. 3283s

ncbi_submitter: 1. Institute of Deep-sea Science and Engineering, The Chinese Academy of Sciences


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: Sammy Creek Landing; Sugarloaf Key; FL

ncbi_isolation_source: shallow marine sediment

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_assembly_name: Rumen uncultured genome RUG10362

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Valencia

ncbi_organism_name: Listeria valentina

ncbi_submitter: Institut Pasteur


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Megamonas sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Porticoccaceae bacterium


ncbi_country: USA:Michigan -

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae BIDMC 45

ncbi_strain_identifiers: BIDMC 45

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 45


ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: JCVI


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR86 cluster bacterium AG-313-D11

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium AG-313-D11


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Merdibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 629164-37


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: USA: St. Louis; Missori

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: France

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea nosoerga

ncbi_submitter: IHU mediterranee infection


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF17-6LB

ncbi_submitter: BGI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: excrement

ncbi_organism_name: Aeromicrobium senzhongii

ncbi_submitter: China CDC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_12_FULL_44_15


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 21362

ncbi_strain_identifiers: CCBAU 21362

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudophaeobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Ohio

ncbi_isolation_source: Bronchial washings

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: China: Zhangzhou

ncbi_isolation_source: Avicennia marina

ncbi_organism_name: Micromonospora sp. HM134


ncbi_country: South Korea

ncbi_isolation_source: Rice field soil

ncbi_organism_name: Methylococcus mesophilus

ncbi_submitter: chungbuk national university


ncbi_organism_name: Kocuria palustris

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: USA: Seattle

ncbi_isolation_source: tissue right shoulder collar membrame

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Viet Nam: Ho Chi Minh

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: oral cavity- mouth

ncbi_organism_name: Bacteroides pyogenes F0041


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Citrobacter sp. RHBSTW-00089

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: burned soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium R496


ncbi_country: Thailand

ncbi_isolation_source: blood of patient with septicemic melioidosis

ncbi_organism_name: Burkholderia pseudomallei 1026b


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Brazil: Uberlandia; MG

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Uberlandia


ncbi_organism_name: Campylobacter curvus

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_assembly_name: freshwater MAG --- AM3_bin-0403

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces coelicolor

ncbi_submitter: Joint Bioenergy Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptomyces sp. NPDC058848

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Halanaerobiaceae bacterium


ncbi_organism_name: Mesorhizobium carmichaelinearum

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Enterobacter wuhouensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: Xenorhabdus szentirmaii DSM 16338

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: EMG


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Spain: Andalucia

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paenibacillus terrae

ncbi_submitter: Instituto de Agricultura Sostenible


ncbi_country: USA: MI; Macomb

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica


ncbi_country: Sweden

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: DTU


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Nanyang Technological University


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Afifella sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: muscle biopsy

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: HBSJRP 7

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Langfang

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Desulfofustis sp.

ncbi_submitter: Pau University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Zurich


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antioquia


ncbi_assembly_name: Rumen uncultured genome RUG12491

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_assembly_name: Salmonella enterica CVM N45393 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Heidelberg

ncbi_submitter: FDA


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: Canyon 246

ncbi_isolation_source: segment 4 of single filament from GC246 mud volcano site

ncbi_organism_name: Candidatus Marithrix sp. Canyon 246

ncbi_strain_identifiers: Canyon 246

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Candidatus Marithrix;x__unclassified Candidatus Marithrix;s__Candidatus Marithrix sp. Canyon 246


ncbi_country: Canada: Alberta

ncbi_organism_name: Sideroxyarcus sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_organism_name: Escherichia coli

ncbi_submitter: APC Microbiome Ireland


ncbi_organism_name: Usitatibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Gordonia sp. LUNF6

ncbi_submitter: Langfang Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. LUNF6


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Spain: Huelva

ncbi_isolation_source: solar saltern

ncbi_organism_name: Spiribacter roseus

ncbi_submitter: University of Seville


ncbi_country: Brazil: Maues; AM

ncbi_organism_name: Bacillus sp. RZ2MS9

ncbi_submitter: ESALQ/USP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RZ2MS9


ncbi_organism_name: Streptomyces brasiliscabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: North Sea: German Bight; Helgoland; Kabeltonne

ncbi_isolation_source: surface seawater; North Sea

ncbi_organism_name: Polaribacter sp. Hel1_33_49

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yunnan Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Mycobacterium yunnanensis

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M065S1

ncbi_submitter: Universite de Montreal


ncbi_country: Thailand

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Naresuan University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Aquipseudomonas alcaligenes

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Mesorhizobium sp. M0129

ncbi_submitter: Washington State University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: SCOPE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pseudomonas sp. UBA2522

ncbi_submitter: University of Queensland


ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_organism_name: Bacillus luti

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Gansu; Aksay

ncbi_isolation_source: spleen sample

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh

ncbi_isolation_source: Babgladeshi Fresh Water Fish (Bacha)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000231


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces celluloflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhizobacter sp.

ncbi_submitter: Spribille Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__environmental samples;s__uncultured Rhizobacter sp.


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Porcincola sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_submitter: Kansas State University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Thermacetogeniaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0356

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Plasticicumulans sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptomyces sp. NBC_00239

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-548

ncbi_organism_name: uncultured Parafilimonas sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1389 from squamous cell carcinomas patient MST003

ncbi_submitter: University of Queensland


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Thailand: Lampang

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: OM182 bacterium

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Coleofasciculus sp. S288

ncbi_submitter: University of Delhi


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Ireland: Dungarvan Harbour

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Cefas


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Cyanobacteria bacterium REEB67

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium REEB67


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 143 (4-5674999)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 143 (4-5674999)


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Yale University


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Chromatiaceae bacterium


ncbi_organism_name: Sphingomonas sanguinis

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Bryobacterales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: China: Wenling

ncbi_submitter: The Affiliated Wenling Hospital


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Thalassotalea sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: stool

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: IMG-taxon 2663762748 annotated assembly

ncbi_organism_name: Nitratireductor indicus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea: Dok-do island

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus dokdonensis

ncbi_submitter: KRIBB


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_country: Ghana: Tulaku Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: TRWAIIA

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium CG23_combo_of_CG06-09_8_20_14_all_32_9


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Listeria rocourtiae subsp. hofi

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria rocourtiae;sb__Listeria rocourtiae subsp. hofi


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_submitter: MPIPZ


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;s__Candidatus Veblenbacteria bacterium RIFOXYC2_FULL_42_11


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Germany: Berlin

ncbi_organism_name: Helicobacter pylori Iso8

ncbi_submitter: Elzbieta Brzuszkiewicz, Goettingen Genomics Laboratory, Institute of Microbiology and Genetics, Goettingen, Germany


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Actinoplanes sp. OR16

ncbi_submitter: Nagaoka University of Technology


ncbi_country: Russia: Irkutsk; Ushakovka river

ncbi_isolation_source: silt

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 226

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Mucilaginibacter sp. 10B2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Washington; Hanford 300 Area; IFRC

ncbi_isolation_source: Hanford 300 Area IFRC 399-1-60 Groundwater

ncbi_organism_name: Parcubacteria bacterium C7867-006

ncbi_submitter: Pacific Northwest National Laboratroy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Parcubacteria;s__Parcubacteria bacterium C7867-006


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Absicoccus porci

ncbi_submitter: Washington University School of Medicine


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_assembly_name: Rumen uncultured genome RUG10095

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3297

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3297


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Iowa


ncbi_organism_name: Streptomyces sp. NPDC015139

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Morganella morganii

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital of Larissa


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_organism_name: Clostridioides difficile E19

ncbi_submitter: LPBA


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from neonate

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ChunLab


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: India: Ladakh

ncbi_isolation_source: Kyagar Tso Lake Water

ncbi_organism_name: Altererythrobacter sp. KTW20L

ncbi_submitter: National Agri-Food Biotechnology Institute


ncbi_organism_name: Streptomyces sviceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Foshan

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Argentina: Dean Funes; Cordoba Province

ncbi_organism_name: Rickettsia bellii

ncbi_submitter: University of New Hampshire


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG02_land_8_20_14_3_00_34_20


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Silvibacterium sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 32 (4-3773988)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 32 (4-3773988)


ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S027

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S027


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_country: Mexico

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Thailand

ncbi_submitter: Mahidol University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacillus sp. FSL M8-0166

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0166


ncbi_organism_name: Phycicoccus elongatus

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_organism_name: Comamonadaceae bacterium CG1_02_60_18

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Acetobacteraceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Croatia

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium croatiense

ncbi_submitter: CSIC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Kapfenberg

ncbi_isolation_source: grass silage

ncbi_organism_name: Lacticaseibacillus huelsenbergensis

ncbi_submitter: Bielefeld University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: groin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Lactococcus petauri


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


gtdb_type_species_of_genus: t

ncbi_country: China: Weihai

ncbi_isolation_source: marine alga from coastal area

ncbi_organism_name: Marinagarivorans algicola

ncbi_submitter: Shandong University at Weihai


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Actinomadura chokoriensis

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: China: Shanghai

ncbi_isolation_source: chicken feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China CDC


ncbi_organism_name: Massilia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Fibrobacter sp. UWB6

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Pharynx Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 3-267-03_S1_C3

ncbi_submitter: IGS


ncbi_submitter: SC


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Legionellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Spirochaetes bacterium ADurb.BinA120

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium ADurb.BinA120


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chryseobacterium scophthalmum


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Peru:Ascope; Casa Grande; Toma Jauregui

ncbi_organism_name: Yersinia pestis PY-15

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus taiwanensis


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptococcus canis

ncbi_strain_identifiers: CVUAS 5867

ncbi_submitter: FU berlin


ncbi_country: USA: Maine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_submitter: Sungkyunkwan University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Lentihominibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India

ncbi_organism_name: Xanthomonas citri pv. thirumalacharii

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. thirumalacharii

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: France

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: FRICAR

ncbi_submitter: SC


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_submitter: Huzhou CDC


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter genomosp. O

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__Enterobacter cloacae complex clade O;s__Enterobacter genomosp. O


ncbi_country: Pakistan

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Cameroon

ncbi_isolation_source: diseased rice seeds and leaf sheaths

ncbi_organism_name: Pseudomonas palleroniana

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: potato

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: CNRS - UPR2355


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom

ncbi_isolation_source: Submandibular lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: uncultured Coriobacteriia bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Korea National Insititute of Health


ncbi_organism_name: Neisseriaceae bacterium HSC-16F19

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Slovenia: Domzale

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Biotechnical faculty, University of Ljubljana


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia

ncbi_isolation_source: sphagnum peat from the bog Obukhovskoe (acidic wetland)

ncbi_organism_name: Singulisphaera acidiphila DSM 18658

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Isosphaerales;f__Isosphaeraceae;g__Singulisphaera;s__Singulisphaera acidiphila;x__Singulisphaera acidiphila DSM 18658


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Oceanihabitans sp. 2_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_country: USA: Ohio

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_country: China: Xisha

ncbi_isolation_source: marine sponge

ncbi_organism_name: Micromonospora craniellae

ncbi_submitter: Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University


ncbi_country: Bangladesh: Hajiganj

ncbi_isolation_source: Human feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: icddr,b


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Comamonadaceae bacterium G21597-S1

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Acidaminococcus sp. UBA7736

ncbi_submitter: University of Queensland


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_submitter: McGill University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC093223

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-268

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: host s whole body

ncbi_organism_name: Candidatus Erwinia haradaeae

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_assembly_name: Rumen uncultured genome RUG13098

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_assembly_name: IMG-taxon 2597490367 annotated assembly

ncbi_organism_name: Sporolactobacillus nakayamae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium