ncbi_country: Southern Ocean

ncbi_isolation_source: Amundsen Sea polynya

ncbi_organism_name: Flavobacteriaceae bacterium ASP10-09a

ncbi_submitter: Marine Biological Laboratory


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Ectopseudomonas oleovorans MOIL14HWK12

ncbi_submitter: JGI


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: EMG


ncbi_country: Thailand: Prachin Buri

ncbi_isolation_source: kidney

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


gtdb_representative: t

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Celeribacter halophilus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Magnetospirillum sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Loktanella sp.


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Amycolatopsis speibonae

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acinetobacter sp.


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Xanthobacter sp. V3C-3

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Rhodothermia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Polyangiaceae bacterium


ncbi_organism_name: Arsenophonus endosymbiont of Dermacentor nuttalli

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Mycoplasma sp. HF3V

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Acidobacteriota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Technology Center of Zhanjiang Customs District P.R.China


ncbi_organism_name: Chlorobium sp. N1

ncbi_submitter: Center for Applied Geoscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;x__Chlorobium/Pelodictyon group;g__Chlorobium;x__unclassified Chlorobium;s__Chlorobium sp. N1


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: Australia: Hobart

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter sp. UBA5709

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Kordiimonadaceae bacterium UBA2615


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: porcine

ncbi_submitter: University of Guelph


ncbi_country: USA: TX

ncbi_isolation_source: Steers

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59439F

ncbi_submitter: FDA


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Stenotrophomonas sp. SMYL7

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Xanthobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Comamonas terrigena

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_country: China

ncbi_isolation_source: Shandong China

ncbi_organism_name: Leptospira alstonii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_isolation_source: gut metagenome

ncbi_organism_name: Anaerobiospirillum succiniciproducens


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2634166302 annotated assembly

ncbi_organism_name: Bosea lupini

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom: Norwich laboratory

ncbi_organism_name: Streptomyces sp. MG

ncbi_strain_identifiers: MG

ncbi_submitter: University of East Anglia


ncbi_isolate: uncultured Planktomarina sp. SW02_Bin14

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_strain_identifiers: uncultured Planktomarina sp. SW02_Bin14

ncbi_submitter: iBB-IST


ncbi_country: USA: Oregon

ncbi_organism_name: Streptococcus pneumoniae 7533-05

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Sorbonne University


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Lelliottia sp. 7254-16

ncbi_submitter: Justus-Liebig University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Butyricimonas paravirosa

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Ithaca; New York

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Hospital Surface

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Beijing

ncbi_isolation_source: hyphae

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Institute of plant protection,CAAS


ncbi_organism_name: Ktedonobacteraceae bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-81

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Myxococcales bacterium

ncbi_strain_identifiers: new MAG-81

ncbi_submitter: Micoorganism


ncbi_submitter: Broad Institute


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Elizabethkingia sp. M8

ncbi_submitter: Shandong First Medical University


ncbi_country: Denmark

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFOXYD1_FULL_42_15


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: St. Kilda Pier; Port Phillip Bay site C shallow

ncbi_isolation_source: Beach sand

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: China CDC


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Carnobacteriaceae bacterium zg-ZUI78


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylococcales bacterium


ncbi_organism_name: Desulfatiglandales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium cadaveris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_assembly_name: DngrITA

ncbi_isolate: DngrITA

ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_strain_identifiers: DngrITA

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_organism_name: Alistipes inops


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Kribbella sp. NPDC056951

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Shigella sonnei

ncbi_submitter: ICMR-National Institute for Research in Bacterial Infections


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Paludibacter sp.


ncbi_isolate: rhizosphere soil of Kandelia obovata

ncbi_organism_name: Streptomyces sp. YPW6

ncbi_strain_identifiers: rhizosphere soil of Kandelia obovata;bgisy057

ncbi_submitter: BGI Research


ncbi_organism_name: Rhodococcoides kroppenstedtii


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-156

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Neobacillus sp. LXY-4

ncbi_submitter: China University of Geosciences(Beijing)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_submitter: Public Health England


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: food

ncbi_submitter: University Hospital Muenster


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sophorae

ncbi_submitter: Shin's Lab


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Mycobacterium tuberculosis KT-0098

ncbi_submitter: Broad Institute


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Denmark: Samsoe; Sandy soil right next to beach in Issehoved

ncbi_organism_name: Streptomyces sp. NBC_01789

ncbi_submitter: Technical University of Denmark


ncbi_country: Netherlands

ncbi_isolation_source: Shellfish

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mexico: Cuatro Cienegas

ncbi_organism_name: Streptomyces sp. CC208A

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Calothrix sp. NIES-3974

ncbi_submitter: Toyohashi University of Technology


ncbi_country: Germany: Aachen

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: USA:New Jersey; Wharton State Forest; Quaker Bridge

ncbi_isolation_source: gut dissection

ncbi_organism_name: Spiroplasma attinicola

ncbi_submitter: University of Connecticut


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S044_49671

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA-JAR

ncbi_submitter: KU Leuven


ncbi_isolation_source: respiratory tract infection


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P16P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Copenhagen


ncbi_country: Chile: Comau fjord; Patagonia

ncbi_isolation_source: marine sediment

ncbi_organism_name: Brevibacterium sp. CCUG 69071

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_country: USA:Wyoming; Yellowstone National Park; Stumped Spring OF2 hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_strain_identifiers: BM-Y

ncbi_submitter: Wei Zhou


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Thailand

ncbi_organism_name: Streptomyces verrucosisporus

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Sphingomonas sp. 1057

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_country: Singapore

ncbi_isolation_source: Sugary water

ncbi_submitter: NTU - Nanyang Technological University


ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: Coprococcus catus


ncbi_country: Canada: Calgary

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Jinan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human eye

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL FOOD INSTITUTE - DTU


ncbi_submitter: University of Galway


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Caldisericales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_01_FULL_49_10


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: Riverside; CA

ncbi_organism_name: Candidatus Karelsulcia muelleri GWSS

ncbi_strain_identifiers: GWSS

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri;x__Candidatus Karelsulcia muelleri GWSS


ncbi_organism_name: Microcella pacifica

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: KAIST


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Octadecabacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella schleiferi

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_organism_name: Chitinophaga defluvii

ncbi_submitter: Huaibei Normal University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_organism_name: Enterococcus ureilyticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: desert sand

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: institut national de recherche pour l'agriculture, l'alimentation et l'environnement ( inrae)


ncbi_country: USA

ncbi_isolation_source: Wyoming Soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Ohio State university


ncbi_organism_name: Kribbella sp. HUAS MG21

ncbi_strain_identifiers: HUAS MG21

ncbi_submitter: Hunan University of Arts and Science


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ridgeland; SC

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: Bradyrhizobium sp. 590_E5_N4_2

ncbi_submitter: VIB


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudomonas sp. IT-347P

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: Agriculture research council


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Actinotignum urinale

ncbi_submitter: Capital Region


ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_assembly_level: Chromosome

ncbi_isolation_source: Dual-strain biofilm on Detroit 562 cells

ncbi_organism_name: Streptococcus pneumoniae D39

ncbi_submitter: Emory University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Green Nitrogen Biotech


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Texas

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Porticoccus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG12973

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: drilled from decomposing wood

ncbi_organism_name: Sodalis ligni

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: intestinal content

ncbi_organism_name: Treponema sp.

ncbi_submitter: ChinaCDC


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: France

ncbi_isolation_source: gut

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-174

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W73676

ncbi_submitter: Broad Institute


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: wound right ear

ncbi_organism_name: Corynebacterium sp. HMSC064H12

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Jadavpur University


ncbi_isolation_source: flower

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: INRAE


ncbi_organism_name: Pseudomonas sp. P8_241

ncbi_submitter: Technical university of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Pseudomonas sp. Q2-TVG4-2

ncbi_submitter: State of Oceanic Administration


ncbi_organism_name: Serratia grimesii

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodopirellula sp. UBA1907

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:Berkshire

ncbi_isolation_source: granuloma

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Poland: Rybnik

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Acidovorax soli

ncbi_submitter: department of plant and microbial biology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Texas Tech University


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: water

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter diazotrophicus


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_country: Canada: British Columbia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Sansha

ncbi_isolation_source: sea water

ncbi_organism_name: Falsirhodobacter flavus

ncbi_strain_identifiers: SYSU M79828

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Atlantic Beach; North Carolina

ncbi_isolation_source: Ovicells

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__unclassified Chromatiales;s__Chromatiales bacterium (ex Bugula neritina AB1)


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: California

ncbi_isolation_source: chicken

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: USDA


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Firmicutes bacterium UBA2209

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2209


ncbi_country: New Zealand

ncbi_isolation_source: Infection swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massey University


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 23

ncbi_submitter: Oregon State University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Anoxybacillus ayderensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hoeflea sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Edwardsiella ictaluri

ncbi_strain_identifiers: HCF #4 Smooth


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan: Hsinchu City

ncbi_organism_name: Fructobacillus papyrifericola

ncbi_submitter: Food Industry Research and Development Institute


ncbi_organism_name: Paracidovorax anthurii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces platensis


ncbi_organism_name: Salinicoccus hispanicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: The University of Hong Kong


ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Belgium

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Sciensano


ncbi_organism_name: Leptospira borgpetersenii serovar Balcanica

ncbi_submitter: Massey University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Zhejiang University


ncbi_organism_name: Corynebacterium sp. CCM 9203

ncbi_submitter: Masaryk University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_organism_name: Veillonella magna DSM 19857

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella magna;x__Veillonella magna DSM 19857


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Algeria

ncbi_isolation_source: Milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Laboratoire de Biotoxicologie , Pharmacognosie et valorisation biologique des plantes


ncbi_country: Denmark

ncbi_isolation_source: Fish (cod)

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: South Carolina

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto de Higiene


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Tauranga

ncbi_organism_name: Rhizobium sp. 'Codium 1'

ncbi_submitter: Victoria University of Wellington


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Egypt: El Beheira; Idku

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: FR 1

ncbi_submitter: msa univeristy


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Tarim University


ncbi_assembly_name: BOT-CA-S

ncbi_isolate: BOT-CA-S

ncbi_strain_identifiers: BOT-CA-S

ncbi_submitter: IZSLER


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Tepidimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp.


ncbi_isolation_source: marine

ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of Queensland


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2130

ncbi_submitter: Broad Institute


ncbi_isolation_source: river

ncbi_organism_name: Aeromonas bivalvium

ncbi_submitter: China Agricultural University


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_isolation_source: mud of lotus field

ncbi_organism_name: Geomobilimonas luticola

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Agaricicola taiwanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: cold seep

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SEOUL NAT'L UNIV.


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: EMG


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: University of Copenhagen


ncbi_country: Colombia

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Antioquia


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Chicago


ncbi_organism_name: Alkalicoccobacillus murimartini

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: USA: IA

ncbi_isolation_source: grainbin dust

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodospirillaceae bacterium UBA2139

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_country: USA: Minnesota

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Photorhabdus noenieputensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: South Korea: Seoul

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Yonsei University College of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University College Cork


ncbi_isolation_source: sludge from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Terracidiphilus sp.


ncbi_country: India: Pune

ncbi_isolation_source: pus

ncbi_submitter: University of Hyderabad


ncbi_country: USA: WI

ncbi_isolation_source: bronchial wash

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Paraburkholderia sp. BL8N3

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9159

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Gambia


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces fagopyri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Vienna


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Kitasatospora sp. NPDC001175


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: University of Cadiz


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Methyloversatilis sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella sp. LSP 196/10

ncbi_submitter: University of Oviedo


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA1324

ncbi_submitter: University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H81800

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia: Darwin

ncbi_isolation_source: Jejunum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Monash University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Texas

ncbi_isolation_source: Secondary wastewater

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Institute for Advanced Biosciences, Keio University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universidad de Leon


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: NASA Ames Research Center


ncbi_country: USA

ncbi_organism_name: Prevotella corporis

ncbi_strain_identifiers: OB21 FMU 4

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Clostridioides difficile F665

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: nasopharynx


ncbi_assembly_name: freshwater MAG --- Loclat_bin-06649

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aeromonas sp. s4

ncbi_submitter: Hangzhou CDC


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Egypt: Mansoura

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC-RRC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas sp. SZMC_28357

ncbi_submitter: University of Szeged


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shanghai

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Shanghai Jiao Tong University


ncbi_assembly_name: IMG-taxon 2599185180 annotated assembly

ncbi_organism_name: Klenkia soli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_submitter: Synlogic


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hallerella succinigenes

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Parabacteroides sp. UBA3278

ncbi_submitter: University of Queensland


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal Vicosa


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus sp. UMB1112A

ncbi_submitter: Loyola University Chicago


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-250-04_S1_C2

ncbi_submitter: IGS


ncbi_country: China: Guangdong

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Thiobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermovirgaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG10747

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. DIV0845

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-2

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-2


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0248

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Japan:Shizuoka; Atami; The New Technology Development Foundation; Botanical Research Gardens

ncbi_isolation_source: bark of Acer palmatum

ncbi_organism_name: Abditibacteriota bacterium

ncbi_submitter: Division of Life Sciences and Bioengineering, Graduate School of Life and Environmental Sciences, University of Tsukuba


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Actinobacteria bacterium UBA3012

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_organism_name: Bryobacter sp.

ncbi_submitter: Monash University


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 20 to 25cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus SJUD6101

ncbi_submitter: Broad Institute


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Siminovitchia fortis

ncbi_submitter: BGI


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: China: Yunnan Province

ncbi_isolation_source: river water

ncbi_organism_name: Vogesella indigofera

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lawsonibacter sp. JLR.KK007

ncbi_submitter: University of Utah


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea

ncbi_isolation_source: enriched culture of compost

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Chonbuk National University


ncbi_country: Netherlands

ncbi_isolation_source: ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Veillonella selective agar

ncbi_organism_name: Enterococcus sp. HSIEG1

ncbi_submitter: Top Institute Food and Nutrition (TIFN)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Thauera sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh


ncbi_country: Pacific Ocean

ncbi_isolation_source: hadal trench sea water

ncbi_organism_name: Alteromonadaceae bacterium A_SAG3

ncbi_submitter: Chinese university of Hong Kong


ncbi_isolate: Exiguobacterium sp. 9Y

ncbi_organism_name: Exiguobacterium oxidotolerans

ncbi_strain_identifiers: Exiguobacterium sp. 9Y

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium oxidotolerans


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Atopobiaceae bacterium AF16-2LB

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: feces from healthy individual

ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: China National GeneBank


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Australia: Adelaide

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SAHMRI


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptomyces halobius

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Thermus thermophilus

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_country: Spain

ncbi_isolation_source: wedge-shells (Donax trunculus)

ncbi_organism_name: Aeromonas molluscorum 848

ncbi_submitter: Universitat de Barcelona


ncbi_country: USA: Nebraska

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: CDC


ncbi_country: Germany: Freising

ncbi_isolation_source: lab-scale biogas fermenter fed with maize silage

ncbi_organism_name: Anaerosphaera multitolerans

ncbi_submitter: Technical university of Munich


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Duffyella gerundensis

ncbi_submitter: JLU


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-593

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- MJ4_bin-373

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_organism_name: Brevibacterium casei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Enterococcus mundtii


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: wing

ncbi_organism_name: Sphingobacterium sp. ML3W

ncbi_submitter: Delaware Technical Community College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Nuvita Ilac


ncbi_organism_name: Actinomadura coerulea

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_organism_name: Fusobacterium animalis 4_8

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: Antarctica: James Ross Island; Komarek Valley

ncbi_isolation_source: Water from glacial stream

ncbi_organism_name: Massilia antarctica

ncbi_submitter: Masaryk university


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_organism_name: Streptomyces sp. NPDC089795

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Halopseudomonas sabulinigri

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Streptomyces griseus subsp. griseus

ncbi_strain_identifiers: NRRL F-5144

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;s__Streptomyces griseus;sb__Streptomyces griseus subsp. griseus


ncbi_organism_name: Streptomyces fractus

ncbi_submitter: University of California Davis


ncbi_organism_name: Treponema sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient C

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG034

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Anaerosacchariphilus hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M57746

ncbi_submitter: Broad Institute


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Salmonella sp. 2021_761

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Lonepinella koalarum

ncbi_submitter: The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Salmonella sp. NW478

ncbi_submitter: Sichuan University


ncbi_organism_name: Agathobacter rectalis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Arizona

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Biological sample (Abscess)

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: Rifle; Colorado

ncbi_isolate: RCA

ncbi_isolation_source: aquifer adjacent to the Colorado River

ncbi_organism_name: Nitrospira sp.

ncbi_strain_identifiers: RCA

ncbi_submitter: Radboud University


ncbi_organism_name: uncultured Aliarcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Cronobacter turicensis


ncbi_country: China: Shanghai

ncbi_isolation_source: catheter

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_submitter: FDA/CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides marinus

ncbi_submitter: City University of Hong Kong


ncbi_country: South Korea: Gwangyang-si

ncbi_isolation_source: freshwater

ncbi_organism_name: Emticicia sp. 21SJ11W-3

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Blautia sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Wolbachia endosymbiont of Drosophila bocki

ncbi_submitter: University of Montana


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Coproplasma stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma stercoravium


ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia terrae

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Limnohabitans sp. Rim8


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Aeromicrobium sp. Sec7.5

ncbi_submitter: Network for Extreme Environment Research


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Alberta


ncbi_isolation_source: Vagina

ncbi_organism_name: Veillonella atypica

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: grass

ncbi_organism_name: Xanthomonas graminis pv. graminis

ncbi_submitter: CEBITEC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. graminis


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F57033

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B377;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Bacillus cereus W

ncbi_strain_identifiers: W

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus W


ncbi_organism_name: Micromonospora sp. NPDC005205

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology