ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Giovannonibacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;x__unclassified Candidatus Giovannonibacteria;s__Candidatus Giovannonibacteria bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D2_bin-004

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_assembly_level: Scaffold

ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: deep subsurface microcosm

ncbi_organism_name: uncultured Acetobacterium sp.

ncbi_submitter: VTT Technical Research Centre of Finland Ltd


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNICAMP


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_submitter: University College Cork


ncbi_country: Arctic Ocean: offshore of Point Barrow; Alaska; USA

ncbi_isolation_source: feces

ncbi_organism_name: Shewanella sp. GutCb

ncbi_strain_identifiers: GutCb

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


gtdb_representative: t

ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Caldifermentibacillus hisashii


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neobacillus rhizosphaerae

ncbi_refseq_category: reference genome

ncbi_submitter: Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 1

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_country: France

ncbi_isolation_source: Faeces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Shigella sp. FJ201502

ncbi_submitter: Fujian Medical University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus sp. 449_SSPC

ncbi_submitter: University of Washington


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Sputum

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_assembly_name: Salmonella enterica CVM N47729 v1.0

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. 71963

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Shandong

ncbi_isolation_source: Mastitis Milk

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_country: China

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Queensland


ncbi_country: Russia

ncbi_isolation_source: activated sludge

ncbi_organism_name: Methylococcus capsulatus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Citromicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Salmonella sp. s54412

ncbi_submitter: Zhejiang university


ncbi_isolate: AOP36_E1_surf _bin _16

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP36_E1_surf _bin _16

ncbi_submitter: Genoscope


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Cyanobacteria bacterium P01_D01_bin.156

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_D01_bin.156


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_type_species_of_genus: t

ncbi_country: Germany: Bad Orb

ncbi_organism_name: Auritidibacter ignavus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Urology Surgery

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Guangzhou Medical University


ncbi_country: Germany: Stendal

ncbi_isolation_source: spleen

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa39

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolate: Pseudomonas sp. Irchel 3F6

ncbi_organism_name: Pseudomonas sp. Irchel 3F6

ncbi_strain_identifiers: Pseudomonas sp. Irchel 3F6

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Porcinotec Co., Ltd


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Pirellula sp.

ncbi_submitter: Stockholm University


ncbi_country: USA:Gillete Castle State Park; East Haddam; CT

ncbi_isolation_source: tourmaline rock

ncbi_organism_name: Allobranchiibius sp. GilTou73

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_isolation_source: Human saliva

ncbi_organism_name: Prevotella histicola

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: Salmonella enterica CVM 43836 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: China: Sichuang

ncbi_isolation_source: ground pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Luzhou

ncbi_isolation_source: mud


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Florida

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Nitrosovibrio sp. Nv4

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: seawater

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_assembly_level: Chromosome

ncbi_country: Japan: Sesoko Isalnd; Okinawa

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Alistipes sp.


ncbi_isolation_source: Factory

ncbi_submitter: University of Surrey


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W89268

ncbi_submitter: Broad Institute


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_submitter: University of Oslo


ncbi_isolation_source: appendix tissue

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: University of California Riverside


ncbi_country: Japan

ncbi_isolation_source: Suction sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. NBC_01224

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paeniglutamicibacter psychrophenolicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: USA: WV

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Capital Region


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Prevotella veroralis

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_isolation_source: bark

ncbi_organism_name: Pseudoclavibacter sp. CFCC 11306

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Roseibium sp.

ncbi_submitter: Jinan University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China Agricultural University


ncbi_organism_name: Phaeobacter italicus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Finegoldia sp.


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-6618

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: food processing facility

ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: Penn State University


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: San Diego State University


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: EMG


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Kitasatospora sp. NPDC048715

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Syntrophobacteria bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL181

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL181


ncbi_organism_name: uncultured Puniceicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Streptomyces lydicus


ncbi_organism_name: Salmonella sp. NW1263

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterococcus devriesei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_country: USA: MD

ncbi_isolation_source: Whole Black Pepper

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Elusimicrobiota bacterium


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Malaya


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: France

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Sweden: Norrkoeping

ncbi_isolation_source: Raw water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Uppsala University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Monash University


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: the hong kong university of science and technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Yangzhou

ncbi_isolation_source: floor wipe

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Trichococcus pasteurii

ncbi_organism_name: Trichococcus pasteurii

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Yunnan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. N22

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium CG22_combo_CG10-13_8_21_14_all_39_12


ncbi_country: USA: Florida

ncbi_organism_name: Stenotrophomonas sp. PFBMAA-4

ncbi_submitter: LANGEBIO


ncbi_country: USA: Oak Ridge; TN

ncbi_organism_name: Pseudomonas sp. FW306-02-F04-BA

ncbi_submitter: Arkin Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Shewanella sp. SR44-3

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Thailand

ncbi_isolation_source: trachea

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_organism_name: Listeria innocua

ncbi_submitter: North-West University


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA: Georgia

ncbi_isolation_source: Vidalia onion field

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of Georgia


ncbi_country: Canada: Calgary

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Nanjing University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Italy: Florence

ncbi_isolation_source: various material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: USA: California

ncbi_isolation_source: forest

ncbi_organism_name: Lonsdalea quercina subsp. quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces acidicola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: China: Chengdu

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Spain

ncbi_isolation_source: hospital

ncbi_organism_name: Staphylococcus aureus SA_ST125_MupR

ncbi_submitter: Servicio de Microbiologia Hospital Universitario 12 de Octubre


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: Spain: Galicia

ncbi_isolation_source: oil contaminated sand

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Caecum


ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Peptostreptococcus sp.

ncbi_submitter: DOE JGI


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Galloscillospira;s__Candidatus Galloscillospira excrementavium


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Pseudomethylobacillus aquaticus

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroides uniformis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillaceae bacterium AF64-9pH9TA

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Japan

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Arcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Salmonella sp. NW81

ncbi_submitter: Sichuan University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Firmicutes bacterium CAG:110

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:110


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Isoptericola sp. NPDC057559

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: Streptomyces sp. NPDC052503


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_country: USA

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Mycobacteroides immunogenum

ncbi_submitter: US EPA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Austria:Vienna; General Hospital Vienna

ncbi_organism_name: Escherichia coli ISC7

ncbi_submitter: AIT


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lentisphaeria bacterium


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-090

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 0 to 5cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: island town; Dongying; Shandong

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Thalassospira sp. TSL5-1

ncbi_submitter: Tsinghua University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: USA: Texas

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Portugal: Porto

ncbi_organism_name: Gardnerella greenwoodii

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_isolation_source: soil

ncbi_organism_name: Bordetella sp. N

ncbi_strain_identifiers: N

ncbi_submitter: BioInformatics Center


ncbi_isolation_source: Placenta

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_country: Switzerland

ncbi_isolation_source: carcasses

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: Pacific Ocean: North Pacific Marian Trench

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwest University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Research Institute for Systems Biology and Medicine


ncbi_organism_name: Rothia mucilaginosa


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_country: China: Nyingchi

ncbi_isolation_source: beet soil

ncbi_organism_name: Bacillus sp. LLTC93

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LLTC93


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_country: USA: Nebraska

ncbi_isolation_source: water

ncbi_submitter: United State Department of Agriculture


ncbi_country: China: Hubei

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: State Key Laboratory of Agricultural Microbiology


ncbi_country: South Korea: Chungbuk province

ncbi_isolation_source: kidney

ncbi_organism_name: Citrobacter tructae

ncbi_strain_identifiers: SNU WT2

ncbi_submitter: Seoul National University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12593

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Orenia marismortui

ncbi_strain_identifiers: MSL 6dP

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Frankia sp. CiP1_Cm_nod1

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: United Kingdom

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: Dalian Maritime University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: University of Queensland


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Austria: Muerzzuschlag

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: AGES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Normandy

ncbi_isolation_source: hand washer

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Streptococcus agalactiae GB00867

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: shanghai 6th Peoples Hospital Affiliated to Shanghai Jiaotong University School of Medicine


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Microbacterium sp. MYb72

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolate: AOP25_F2_surf _bin _5

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP25_F2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_country: USA: Mono Lake California

ncbi_isolation_source: anoxic mud

ncbi_organism_name: [Bacillus] selenitireducens MLS10

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: Decomposed wood of Fagus sylvatica; 5-15 years decomposition

ncbi_organism_name: Pseudomonas sp. dw_358

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: uncultured Jatrophihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Chicha; maize-based fermented beverage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CECT 8965

ncbi_submitter: UVEG


ncbi_country: China

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingosinicella microcystinivorans

ncbi_submitter: Meijo University, Graduate School of Environmental and Human Science


ncbi_country: Norway

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Explogen LLC


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Streptomyces sp. NPDC059142


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_organism_name: bacterium


ncbi_country: USA: IL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Blood

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: MERIAL


ncbi_country: USA: CA

ncbi_isolation_source: damselfish skin ulcer

ncbi_organism_name: Photobacterium damselae

ncbi_submitter: FDA/CFSAN


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: NIH/NHGRI


ncbi_assembly_name: freshwater MAG --- Umea_bin-00544

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Gull Lake

ncbi_organism_name: Microcystis aeruginosa G13-01

ncbi_submitter: University of Michigan


ncbi_country: United Kingdom: Lincoln

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 33591_Arg6

ncbi_submitter: University of Lincoln


ncbi_isolation_source: screen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Cardiff University


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Henan

ncbi_organism_name: Streptomyces vilmorinianum

ncbi_submitter: food college


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: China: Hengyang

ncbi_isolation_source: bile; Blood

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Campylobacter showae

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: USA: North Carolina

ncbi_organism_name: Klebsiella pneumoniae CHS 24

ncbi_strain_identifiers: CHS 24

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 24


ncbi_isolation_source: nasopharynx


ncbi_assembly_name: IMG-taxon 2724679802 annotated assembly

ncbi_organism_name: Melghirimyces algeriensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Albidiferax sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: China: Hangzhou

ncbi_isolation_source: Secretion

ncbi_submitter: Zhejiang university


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_isolate: human

ncbi_organism_name: Mycobacterium shinjukuense

ncbi_strain_identifiers: human;DSM 45663

ncbi_submitter: Intitut Pasteur Paris


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: South Korea

ncbi_isolation_source: estuary sediment

ncbi_organism_name: Marilutibacter aestuarii

ncbi_submitter: Inner Mongolia University


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Shenzhen University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM U1070


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7163

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: purulent material

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_isolation_source: tissue

ncbi_organism_name: Leclercia sp. 119287

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridium sporogenes PA 3679

ncbi_submitter: CSIRO Food and Nutritional Sciences


ncbi_isolation_source: Colon

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Pseudoflavonifractor capillosus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Novosphingobium sp. BK352

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- KR1_bin-0943

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__environmental samples;s__uncultured Candidatus Actinomarinales bacterium


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Wound secretions

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Morganella morganii

ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus HI010B

ncbi_submitter: Broad Institute


ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: Tokyo University of Science


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Actinobacteria bacterium UBA7422

ncbi_submitter: University of Queensland


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: France

ncbi_isolation_source: grape must

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 2186

ncbi_submitter: Brigham Young University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CBMA123

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Sea Water

ncbi_organism_name: Rhodobacteraceae bacterium Alg238-R152

ncbi_submitter: Elham Karimi


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: Canada: Cambridge Bay; NU

ncbi_isolation_source: Arctic Soil

ncbi_organism_name: Pedobacter frigoris

ncbi_submitter: Kyonggi University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 190

ncbi_submitter: Oregon State University


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella parvula

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transverse colon lumen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhizobium binae

ncbi_submitter: Yantai University


ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-7

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SZAS TMP-7

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: uncultured Spongiibacteraceae bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: Micromonospora sp. BQ11

ncbi_submitter: Northwest Minzu University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coleofasciculus sp. FACHB-125

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudomonas benzenivorans

ncbi_submitter: Ocean university of China


ncbi_country: Japan: Rishiri Island; Hokkaido

ncbi_organism_name: Luteimicrobium subarcticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Missouri

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Broad Institute


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qilu University of Technology


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls619

ncbi_submitter: NanKai universit


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Life Sciences in Lublin


ncbi_country: China: WuHan

ncbi_isolation_source: retail market

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE161


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Germany

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_country: Paraguay: Coronel Oviedo

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-679-P16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia

ncbi_isolation_source: Associated bacteria of marine Synechococcus CC9311 laboratory strain

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Groningen


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_submitter: St. Olav University Hospital


ncbi_country: USA: NC

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Coprobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: ROV grab from gas hydrate in Gulf of Mexico

ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridiales bacterium UBA7277

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Clostridiales bacterium UBA7277


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 29280

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: USA: New York City

ncbi_isolation_source: induced sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_submitter: University of Galway


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Luteimonas sp. RC10

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacilli bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0356

ncbi_submitter: Broad Institute


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-0335

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Hallella colorans


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark

ncbi_isolation_source: cloaca content

ncbi_organism_name: Arcobacter porcinus

ncbi_submitter: Ghent University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M1143


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC052077

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agrobacterium sp. SHOUNA12C

ncbi_submitter: VIB - UGent


ncbi_country: USA: Atlanta

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae ATL_2011_01_03

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: South Korea: Gimhae

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Svalbard: Smeerenburgfjorden

ncbi_isolation_source: sediment core

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Vienna


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_country: France: Rouen

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Normandie Univ


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_submitter: Portland State University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_38_10


ncbi_organism_name: Oscillatoriales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Bandiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Bandiella;x__unclassified Candidatus Bandiella;s__Candidatus Bandiella sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Streptomyces sp. NBC_00081

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudoduganella danionis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Flavicella sp.


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Version 1 for Proteus mirabilis C05028 genome

ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: stool from a patient with diarrhea due to a foodborne disease outbreak

ncbi_organism_name: Proteus mirabilis C05028

ncbi_submitter: BGI-shenzhen


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Sinimarinibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Corynebacterium nuruki S6-4

ncbi_submitter: Kyung Hee Univ.


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: MD

ncbi_isolation_source: cucumber

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Yersinia pestis PY-09

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Alsobacter soli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWB1_42_117


ncbi_isolation_source: Hospital Universitario Central de Asturias (Oviedo)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_assembly_name: Rumen uncultured genome RUG11304

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_submitter: Aalborg University


ncbi_organism_name: Bacillus sp. FSL K6-0250

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0250


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Alistipes sp.

ncbi_submitter: SponGES


ncbi_country: China

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Metcalfe Bay; British Columbia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_submitter: Uppsala University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: oropharynx

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: Italy: Bleggio Superiore (TN)

ncbi_isolation_source: liver

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: China: Shenzhen

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_organism_name: Sanguibacter biliveldensis

ncbi_submitter: Bielefeld University


ncbi_organism_name: Pseudoalteromonas sp. UG3-2

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Pig feces

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: CPS 2a

ncbi_submitter: University of Helsinki


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC053253

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Anaerostipes hadrus


ncbi_assembly_name: Assembly for Stenotrophomonas maltophilia 5BA-I-2

ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas maltophilia 5BA-I-2

ncbi_submitter: Faculty of Science, Charles University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil

ncbi_isolation_source: zoo composting manure

ncbi_organism_name: Caldibacillus debilis

ncbi_submitter: UNICAMP


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: Rutgers University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 6178

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Arthrobacter oryzae

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Amarolinea dominans

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Caldilineae;o__Caldilineales;f__Candidatus Amarolineaceae;g__Candidatus Amarolinea;s__Candidatus Amarolinea dominans


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelotrichia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: City University of Hong Kong


ncbi_isolate: AOP43_C2_coeur _bin _12

ncbi_organism_name: Latilactobacillus curvatus

ncbi_strain_identifiers: AOP43_C2_coeur _bin _12

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Methermicoccus sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bariatricus sp. SGI.161

ncbi_submitter: University of Manitoba


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella sp. C3319

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_submitter: Zhuhai People's Hospital


ncbi_organism_name: Streptomyces sp. NPDC056580

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: Bp Uniclon 02

ncbi_submitter: UFMG


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: KEMRI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudoclavibacter helvolus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Metamycoplasmataceae bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10048

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: USA:New York Ontario

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: Cornell University


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: EMG


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Pseudarthrobacter raffinosi

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: IMG-taxon 2636416189 annotated assembly

ncbi_organism_name: Pseudomonas psychrophila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 1999 case_IMD

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Bacillus sp. FSL M8-0277

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0277


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-567

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Priestia flexa


ncbi_country: Ghana: Northen region

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Cardiff University