ncbi_isolation_source: Throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Porphyromonas endodontalis

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Yale University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Science


ncbi_country: Russia

ncbi_isolation_source: obtained by multistage selection from a strain isolated from a natural source

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: NRC Kurchatov Institute


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Institut Pasteur, Universite Paris Cite


ncbi_organism_name: Streptomyces sp. NPDC056165

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: t

ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Institute of animal husbandry and veterinary medicine


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University Hospital Lozenetz


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Institut de la recherche véterinaire de Tunisie


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Cryptosporangium sp. NPDC048952


ncbi_organism_name: Weissella hellenica

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Sarcina sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. IT-P74

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_submitter: Colorado State University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Basel district

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Erysipelothrix inopinata

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Legionella rowbothamii

ncbi_refseq_category: reference genome

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Arabian Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Brevibacterium sp. BDJS002

ncbi_submitter: Bose Institute


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Ontario

ncbi_isolation_source: Rodent

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120009


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: Bt C4

ncbi_submitter: Wuhan Textile University


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Denmark

ncbi_submitter: University of Southampton


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Bangladesh: Chattogram

ncbi_isolation_source: wastewater

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_organism_name: Oscillibacter valericigenes

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Bacillus sp. FSL L8-0358

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0358


ncbi_isolate: Psychrobacter aquaticus CMS56

ncbi_isolation_source: cyanobacterial mat

ncbi_organism_name: Psychrobacter aquaticus

ncbi_strain_identifiers: Psychrobacter aquaticus CMS56

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Atlantic Ocean

ncbi_isolation_source: pentadecane enrichment inoculated with seawater

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: University of Califronia


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2459

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: South Korea: Seoul

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Kyung Hee University


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: USA: California

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Washington State University Vancouver


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinobaculum massiliense

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: Engineered derivative of C. glutamicum ATCC 13032; carrying a number of defined deletions

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Bielefeld University


ncbi_assembly_name: freshwater MAG --- I1_bin-376

ncbi_isolation_source: pond

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinhua Central Hospital


ncbi_assembly_name: IMG-taxon 2671180036 annotated assembly

ncbi_organism_name: Nitrosovibrio sp. Nv17

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter sp. JL2872

ncbi_submitter: Xiaopei lin's shared submissions


ncbi_organism_name: Streptococcus suis YS19

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Russia: Bering Sea; 109 miles east of Kamchatka Peninsula

ncbi_isolation_source: Marine sponge from a depth of 350 Meters near Komandorskiye Islands

ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: University of Missouri

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA

ncbi_isolation_source: citrus (Orange)

ncbi_organism_name: Xanthomonas sp. LMG 8993

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Gemmiger qucibialis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_submitter: UMCG Groningen


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudonocardia ailaonensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Shenzhen

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea

ncbi_organism_name: Roseibium marinum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Geobacter sp. UBA4057

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gluconobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Rhodobacteraceae bacterium nBUS_24

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces sp. NPDC058637

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus sp. DC4300-2b2

ncbi_submitter: Institute of Tibetan Plateau Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DC4300-2b2


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Streptomyces sp. NPDC057284


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Usitatibacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cotton soil with polyaspartic acid water retaining agent

ncbi_organism_name: Paractinoplanes polyasparticus

ncbi_submitter: College of Life Sciences


ncbi_isolation_source: Hospital sink trap

ncbi_organism_name: Cupriavidus pauculus

ncbi_submitter: University of Plymouth


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Neisseria elongata

ncbi_submitter: EMG


ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: Netherlands

ncbi_isolation_source: meat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NIZO Food Research BV


ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-180

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Massachusetts

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Patient4 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Kimchi

ncbi_organism_name: Companilactobacillus allii

ncbi_submitter: world institute of kimchi


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SMMC6014

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10327

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: USA: BIFSCo Region 8

ncbi_isolation_source: stool

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum;x__Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1781


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Akkermansiaceae bacterium UBA6541

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: lake water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Doubanjiang

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Sichuan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: India: Kolkata

ncbi_isolation_source: waste contaminated soil

ncbi_organism_name: Rhodococcus sp. PAE-6

ncbi_submitter: Bose Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. PAE-6


ncbi_organism_name: Thiomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1527

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou Medical University


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Canada: Ontario; Guelph

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Blegdam


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: PLEURAL FLUID

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Actinoplanes oblitus

ncbi_strain_identifiers: NRRL 3884

ncbi_submitter: Bielefeld University


ncbi_country: Poland

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: Sweden

ncbi_isolation_source: BAL

ncbi_organism_name: Mycobacterium tuberculosis BTB07-254


ncbi_organism_name: Pseudomonas hunanensis

ncbi_submitter: Guizhou University of Traditional Chinese Medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan: Nagano

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Dartmouth College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Raoultella planticola

ncbi_submitter: SurvCARE


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Marinobacter sp. bablab_jr003

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Atlantic Ocean

ncbi_isolation_source: gill

ncbi_organism_name: Thiohalomonas sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: Sphingomonas sp. 10B4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Azovibrio sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC056470

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Freie Universitaet Berlin


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Salmonella sp. NW802

ncbi_submitter: Sichuan University


ncbi_organism_name: bacterium


ncbi_country: India

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Universite Laval


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: BGI


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. P42RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P42RS


ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand: Chonburi

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces marinisediminis

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Parabacteroides merdae CL09T00C40

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Intrauterine purulent content

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: China: Fujian

ncbi_isolation_source: Copper Mine tailings

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_strain_identifiers: ZJ

ncbi_submitter: Central South University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Arthrobacter sp. MYb216

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Mycobacterium tuberculosis CDC1551A

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG10243

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Loigolactobacillus binensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: China

ncbi_organism_name: Shigella flexneri 4c

ncbi_submitter: Hangzhou Centrer for Disease Control amd Prevention


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: South Korea: Bucheon

ncbi_isolation_source: Chicken meat

ncbi_submitter: Korea University Graduate School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dessau


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: Clemson University


ncbi_country: Austria: Vorarlberg

ncbi_isolation_source: Austrian hard cheese rind

ncbi_organism_name: Brevibacterium sp. S111

ncbi_submitter: Iowa State University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Hangzhou

ncbi_isolation_source: Drainage

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang University


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


gtdb_type_species_of_genus: t

ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Sodaliphilus pleomorphus

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Rhodopirellula bahusiensis

ncbi_submitter: University of Southern California


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pacific Norwthwest

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: University of Washington


ncbi_isolation_source: Richmond Mine C75 location

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy: Florence

ncbi_submitter: University of Trento


ncbi_isolation_source: Faeces


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. F01002

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Mesorhizobium sp. M0035

ncbi_submitter: Washington State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Halospina sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolate: AOP5_FY1_surf _bin _9

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_strain_identifiers: AOP5_FY1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Vietnam-Russia Tropical Center


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Port Phillip Bay; Heron Island and Pacific Ocean; Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium butyricum


ncbi_organism_name: Pasteurella sp. PK-2025

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: FL

ncbi_isolation_source: Calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Xinjiang

ncbi_isolation_source: topsoil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Xinjiang Academy of Agricultural Science


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: Crohn s disease patient gut tissue biopsy

ncbi_submitter: University of Toronto


ncbi_organism_name: Borreliella burgdorferi

ncbi_strain_identifiers: PMeh

ncbi_submitter: Columbia University


ncbi_submitter: Yale University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. LT2;x__Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Hafnia alvei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine water

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: bacterium

ncbi_submitter: Shenzhen University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Trichococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: University hospital Lubeck


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA7509

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: London

ncbi_organism_name: Staphylococcus capitis subsp. capitis

ncbi_submitter: Modernising Medical Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: nares

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-1600

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran

ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium meliloti 1A42

ncbi_submitter: University of Florence


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC064F07

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC064F07


ncbi_organism_name: Mycobacterium sp. ITM-2016-00317

ncbi_submitter: Institute of Tropical Medicine


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. FU40

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Ruminococcus sp. N15.MGS-57

ncbi_submitter: The Mayo Clinic


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: China: Guangxi Province

ncbi_isolation_source: mangrove wetland sediment

ncbi_organism_name: Thalassovita mangrovi

ncbi_submitter: School of Life Sciences


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Providencia vermicola

ncbi_submitter: University of Oxford


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Slackia sp.


ncbi_organism_name: Streptomyces aureus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Aggregatibacter sp. 2125159857

ncbi_submitter: Queensland Health Forensic and Scientific Services


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Shewanella sp. HL-SH2

ncbi_submitter: Seoul National University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Australia: Brisbane

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: MD

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_submitter: Zhejiang university


ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_country: China

ncbi_organism_name: Salmonella sp. 2101

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Chile

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad Autonoma de Chile


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas cangingivalis

ncbi_submitter: UC Davis


ncbi_country: USA

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Technical University Munich


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kurthia sp. ISK08

ncbi_submitter: Independent University, Bangladesh


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_assembly_name: Unknown Bacterium AM_0854

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacteroides clarus


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Actinomycetota bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_isolation_source: mouse gut metagenome


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Sydney

ncbi_isolation_source: Fine needle aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: i3 Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Demequina lutea

ncbi_submitter: Environmental Microbiology Lab


ncbi_assembly_name: Rumen uncultured genome RUG11208

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189


ncbi_country: USA: IL

ncbi_isolation_source: Core; Corn

ncbi_organism_name: Bacillus sp. AFS026049

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS026049


ncbi_country: France: Kremlin-Bicetre

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Zhejiang university


ncbi_country: India: Jharkhand; Bokaro; Khetko

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sinobacterium caligoides

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland: Zwieseln

ncbi_isolation_source: Tilsit cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of queensland


ncbi_isolation_source: Colon

ncbi_organism_name: Blautia producta

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG13593

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Menzies School of Health Research


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-414-C04

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas sp. UBA7346

ncbi_submitter: University of Queensland


ncbi_organism_name: Dechloromonas sp. ZS-1

ncbi_submitter: Institute of Hydrobiology


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: United Arab Emirates: Dubai shore

ncbi_isolation_source: coastal sand

ncbi_organism_name: Mycolicibacterium arabiense

ncbi_submitter: Uppsala University


ncbi_country: France

ncbi_isolation_source: Blood-culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Microcoleus sp. K5-D4

ncbi_submitter: Palacky University Olomouc


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: Methanol fermentation with Candida sp. (not sterile)

ncbi_organism_name: Acidomonas methanolica NBRC 104435

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: South Korea: Changwon

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Yonsei University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Atopobium sp. UBA7261


ncbi_country: USA: Roseburg

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_106 WWTPs influent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: China: Guangxi

ncbi_isolation_source: plant

ncbi_organism_name: Phycicoccus sonneratiae

ncbi_submitter: Life sciences Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Murdoch University


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Liaoning Province; Dalian City; Ganjingzi District; Dalian Bay

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudothioclava nitratireducens

ncbi_submitter: Hohai University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Germany

ncbi_organism_name: Borreliella burgdorferi

ncbi_strain_identifiers: PAbe

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Eubacterium sp. CAG:38

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:38


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_submitter: University of Oslo


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria sp. P0016.S006

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Chthoniobacterales bacterium


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: CFBP 6863

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0164

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudomonas paracarnis

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: crab grass

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Propionibacteriaceae bacterium


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai CDC


ncbi_isolation_source: microbial mat

ncbi_submitter: University of Queensland


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0585

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_submitter: Sichuan University


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: A*STAR IDLabs


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Psittacus erithacus

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Russia:North Caucasus (Krasnodar region)

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: ARRIAM


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Portugal: Oporto

ncbi_isolation_source: Raw-frozen dog food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: China: Hubei; Qianjiang

ncbi_organism_name: Streptomyces globisporus C-1027

ncbi_submitter: Key Laboratory of Biotechnology of Antibiotics of Ministry of Health, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces albovinaceus subgroup;s__Streptomyces globisporus;x__Streptomyces globisporus C-1027


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: India: Arunachal pradesh

ncbi_isolation_source: Himalayan medicinal plant

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: CSIR-North East Institute of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Niallia sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Texas at Dallas


ncbi_country: Spain

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Clostridium pasteurianum BC1

ncbi_submitter: Brookhaven National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Methylophilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Shandong

ncbi_isolation_source: vaginal secretion

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Shandong University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_organism_name: Aeromonas sp. MR19

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: USA: Michigan

ncbi_organism_name: Paenibacillus sp. PvP052

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4085

ncbi_submitter: University Hospital Regensburg


ncbi_isolation_source: Farm

ncbi_submitter: ITACYL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Wolbachia endosymbiont of Zeugodacus apicalis

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Desulfobacterales bacterium


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Nitrospirales bacterium


ncbi_country: Pacific Ocean: Manus Basin

ncbi_isolation_source: ctenidium tissue of snail from surface of black chimney in hydrothermal vent field

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Salmonella sp. SKLX062849

ncbi_submitter: Zhejiang university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 40-80 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Sediminicoccus rosea

ncbi_submitter: Institute of Microbiology, CAS


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas sp. FP198

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI


ncbi_submitter: JAMSTEC


ncbi_isolation_source: Faeces

ncbi_organism_name: Mycoplasmoidaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediment

ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: India

ncbi_isolation_source: Tannery effluent

ncbi_organism_name: Kocuria sp. LUK

ncbi_strain_identifiers: LUK

ncbi_submitter: Babasaheb Bhimrao Ambedkar University, Lucknow


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Ares Genetics


ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Portugal: Porto

ncbi_isolation_source: urine

ncbi_organism_name: Prevotella corporis

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_assembly_name: freshwater MAG --- AM-sed-core3-D1_bin-832

ncbi_isolation_source: freshwater sediment

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_country: China: Gansu; Aksay

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Namibia

ncbi_organism_name: Ehrlichia ruminantium

ncbi_strain_identifiers: Omatjenne

ncbi_submitter: ARC - Onderstepoort Veterinary Research


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: toluene treated bioreactor sludge

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUT

ncbi_submitter: Seoul National University of Science and Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_country: USA: TX

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG08_land_8_20_14_0_20_41_16


ncbi_assembly_name: Rumen uncultured genome RUG12028

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Cheese starter

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Radboudumc


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_country: Syria

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Probiotics Microbiome Convergence Center


ncbi_organism_name: Pseudomonas sp. AL 58

ncbi_strain_identifiers: AL 58

ncbi_submitter: huazhong agricultural university


ncbi_organism_name: Streptomyces olivaceus

ncbi_strain_identifiers: KLBMP 5084

ncbi_submitter: Jiangsu Normal University


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Egypt

ncbi_isolation_source: Bacterial symbiont of Heterorhabditis bacteriophora

ncbi_organism_name: Photorhabdus aegyptia

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Aminobacter aganoensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Rhodococcus sp. NBC_00297

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NBC_00297


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: sewage sludge

ncbi_organism_name: Paracoccus pantotrophus

ncbi_submitter: Yangjiang Polytechnic


ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae MNZ37

ncbi_submitter: University of Mississippi medical center


ncbi_organism_name: Escherichia coli IS25

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Argentina: Tucuman

ncbi_isolation_source: artisanal cheese

ncbi_organism_name: Enterococcus faecium CRL1879

ncbi_submitter: Centro de Referencia para Lactobacilos (CERELA)


ncbi_country: Australia

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Murdoch University


ncbi_organism_name: Streptomyces microflavus


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus HOAG6092

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: control oxisol soil plot 5

ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Arizona State University


ncbi_organism_name: Treponema phagedenis

ncbi_submitter: Washington State University


ncbi_organism_name: Sulfitobacter sp. 1A09149

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Smithella sp.


ncbi_organism_name: Pseudomonas sp. 10C3

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany: Dusseldorf

ncbi_isolation_source: Tap water

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: LNCC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Gut flora

ncbi_organism_name: Enorma burkinafasonensis

ncbi_submitter: URMITE


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0077


ncbi_organism_name: Anaeromassilibacillus sp. An250

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rochester; NY

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: Rhodoplanes sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Undibacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Isosphaeraceae bacterium


ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_strain_identifiers: NCPPB 1381

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Bacillus mobilis


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_organism_name: Aquimarina algiphila

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM80Ai

ncbi_submitter: Washington University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- YR2_bin-0010

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Chile: The Atacama Desert

ncbi_isolation_source: Microbial mat

ncbi_organism_name: Micromonospora tarapacensis

ncbi_submitter: GEOMAR - Helmholtz Centre for Ocean Research Kiel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bradyrhizobium japonicum is5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces smyrnaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chthonomonas sp. UBA2387

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA6365

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6365


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: CNGB


ncbi_country: Russia: Kirov

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Portugal: Oporto

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: REQUIMTE-UCIBIO. Faculdade de Farmacia da Universidade do Porto.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: FT 76

ncbi_submitter: Spiez Laboratory


ncbi_country: USA: MA

ncbi_isolation_source: dog

ncbi_submitter: FDA/CFSAN


ncbi_country: USA:Washington; DC

ncbi_isolation_source: Ground beef

ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: Howard university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus sp. 30.2.29

ncbi_submitter: USDA-ARS


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassolituus sp. UBA2590

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_submitter: Yangzhou University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Equitorial atlantic

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Thailand

ncbi_submitter: SC