ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: National Health Research Institutes


ncbi_assembly_level: Contig

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of California, Riverside


ncbi_assembly_level: Scaffold

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8819

ncbi_submitter: University of Warwick


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Liu et al. 2021)


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The Ohio State University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: FCB group bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__unclassified FCB group;s__FCB group bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_level: Chromosome

ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Bolivia: La Paz

ncbi_isolation_source: stool sample

ncbi_submitter: University of Gothenburg


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Ralstonia wenshanensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: China: Chengdu

ncbi_isolation_source: farm

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Rahnella victoriana

ncbi_submitter: Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Portugal

ncbi_isolation_source: Borehole HDN1; spa

ncbi_organism_name: Aquicella siphonis

ncbi_refseq_category: reference genome

ncbi_submitter: UPPSALA UNIVERSITY


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Fuzhou center for disease control and prevention


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China National Research Institute of Food and Fermentation Industries


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: College of Agriculture, Guangxi University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus sp. 23.2

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: BSN133 Contigs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Laceyella sacchari strain 1-1

ncbi_country: India

ncbi_isolation_source: hot spring

ncbi_organism_name: Laceyella sacchari 1-1

ncbi_submitter: CSIR-IMTECH


ncbi_assembly_name: Rumen uncultured genome RUG12830

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland

ncbi_isolation_source: bloodstream

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Inselspital


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Micrococcus sp. XM4230A

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Staphylococcus aureus VET0066R

ncbi_submitter: Broad Institute


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Japan

ncbi_isolation_source: methanogenic sludge treating industrial wastewater

ncbi_organism_name: Pelotomaculum terephthalicicum JT

ncbi_strain_identifiers: JT

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: China: Ningxia Hui Autonomous Region

ncbi_isolation_source: sand

ncbi_organism_name: Goekera deserti

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: China: Shanghai

ncbi_isolation_source: Gut

ncbi_organism_name: Fusobacterium hwasookii

ncbi_submitter: Shanghai Tenth People's Hospital, Tongji University School of Medicine


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: Saudi Arabia

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Sikkim; North East India

ncbi_isolation_source: Eup (fermented bamboo shoot)

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: CSIR- Central Food Technological Research Institute


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Citromicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_submitter: School of Pharmaceutical Sciences


ncbi_country: France

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M058S1

ncbi_submitter: Universite de Montreal


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B7(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0096

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Thermodesulfatator sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Biopesticide Agree WP

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Antarctica

ncbi_isolation_source: marine water column

ncbi_organism_name: Aurantimonas sp. DM33-3

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. DIV0733a


ncbi_submitter: shandong university


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Pseudomonas anguilliseptica

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. C3216

ncbi_submitter: Sichuan University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Kitasatospora viridis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Universidade Catolica de Brasilia


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0299917.8

ncbi_submitter: IGS


ncbi_organism_name: Bacillota bacterium HCP3S3_F3_1

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium HCP3S3_F3_1


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Uruguay

ncbi_isolation_source: campo natural

ncbi_organism_name: Serratia nevei

ncbi_strain_identifiers: ILBB 219

ncbi_submitter: INIA


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus agalactiae CCUG 25532

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: USA: Chicago

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Thermus thermophilus

ncbi_strain_identifiers: TMY

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Sulfitobacter sp. HI0054

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Italian National Research Council (CNR)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Thompson trail; Siena College campus; Loudonville; New York

ncbi_isolation_source: frozen soil [ENVO_01001526]|leafy wood soil [ENVO_00005783]

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Siena College


ncbi_country: Spain: Madrid

ncbi_isolation_source: lymph node

ncbi_organism_name: Mycolicibacterium mageritense

ncbi_submitter: Hospital La Paz


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Quadram Institutte


ncbi_country: USA

ncbi_organism_name: Streptococcus agalactiae SGBS002

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Instituto Nacional de Salud


ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: EMG


ncbi_country: China: Xinjiang Province

ncbi_isolation_source: Alhagi sparsifolia Shap. biofilm microbiome

ncbi_organism_name: Pseudomonas sp. LTJR-52

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: France

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Sphingobacterium thermophilum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: INTA


ncbi_country: China: Huizhou

ncbi_isolation_source: seawater

ncbi_organism_name: Thiotrichales bacterium 19S3-11

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_country: Brazil

ncbi_isolation_source: swine urine (Sus scrofa domesticus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_submitter: MICALIS INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar israelensis


ncbi_country: Panama: Gamboa

ncbi_organism_name: Pseudonocardia sp. Ae706_Ps2

ncbi_submitter: University of East Anglia


ncbi_submitter: China agricultural university


ncbi_organism_name: Gordonia spumicola

ncbi_submitter: NBRC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Geobacillus stearothermophilus ATCC 7953

ncbi_strain_identifiers: ATCC 7953

ncbi_submitter: MRIGlobal


ncbi_organism_name: Nitratireductor sp. GISD-1A_MAKvit

ncbi_submitter: CSIR-IMTECH


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: WA; DAFWA research station paddock 7a

ncbi_organism_name: Mesorhizobium sp. WSM4983

ncbi_submitter: Murdoch University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Herbinix sp.

ncbi_submitter: University of Waterloo


ncbi_country: Austria

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium;x__unclassified Oribacterium;s__Oribacterium sp. oral taxon 108;x__Oribacterium sp. oral taxon 108 str. F0425


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_isolate: CON5 bin14

ncbi_organism_name: Oribacterium sp.

ncbi_strain_identifiers: CON5 bin14

ncbi_submitter: China Agricultural University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Kluyvera sichuanensis

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonas sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: water

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Alkalimonas mucilaginosa

ncbi_submitter: National Centre For Cell Science (NCCS)


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: China: The coast of Weihai in the North Yellow Sea; Weihai

ncbi_organism_name: Notoacmeibacter marinus

ncbi_submitter: Harbin Institute of Technology at Weihai


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Soochow University


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Liaoning

ncbi_isolation_source: oral

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: CH

ncbi_submitter: Nanchang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM36-17

ncbi_submitter: BGI


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: Not defined

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Bern


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Xiamen University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_name: freshwater MAG --- B12_bin-0982

ncbi_isolation_source: pond

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: Belgium

ncbi_submitter: University of Liege


ncbi_submitter: Universidad Complutense de Madrid


ncbi_assembly_name: Rumen uncultured genome RUG10383

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Bangladesh: Dhaka

ncbi_submitter: Child Health Research Foundation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Japan

ncbi_isolation_source: soy sauce

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Russia: Astrakhan region

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3264-1

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Methylococcus sp. Mc7

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: Rumen uncultured genome RUG10609

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 31

ncbi_submitter: USDA-ARS


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bradymonadales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: uncultured Hydrogenobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Demequina sp. SO4-13

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin97

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin97

ncbi_submitter: Monash University


ncbi_organism_name: Terriglobia bacterium


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark: Aarhus Bay; Baltic Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: [Bacteroides] pectinophilus


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_assembly_name: BBROOKSOX

ncbi_isolate: BBROOKSOX

ncbi_isolation_source: gill tissue

ncbi_strain_identifiers: BBROOKSOX

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus brooksi thiotrophic gill symbiont


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_36_9


ncbi_organism_name: Prevotella bivia


ncbi_organism_name: Segatella oris


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yakult Central Institute


ncbi_country: Brazil: Botucatu

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: India: Aravali; Ratnagiri; Maharashtra

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: MACS Agaharkar Research Institute, Pune


ncbi_country: Malaysia: Perak

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Desulfuromonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Synechococcus sp. H55.10

ncbi_submitter: University of Montana


ncbi_country: Ecuador: Quito

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane factory

ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: USDA-ARS


ncbi_country: China: Zhejiang

ncbi_isolation_source: Drainage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG13765

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Vienna


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_organism_name: Enterococcus faecium Com15

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Lacticaseibacillus rhamnosus


ncbi_organism_name: Microlunatus phosphovorus

ncbi_submitter: Nanyang Technological University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: academisch medisch centrum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Saroma-ko Lagoon; 44 07 N; 143 58 E

ncbi_isolation_source: Sea ice

ncbi_organism_name: Polaribacter sp. SA4-12

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: Human sputum

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: France

ncbi_isolation_source: Cider

ncbi_organism_name: Oenococcus oeni IOEB_C23

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: Lachnospiraceae bacterium P6A3

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Guelph; Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_45_14


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Hyalangium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: India

ncbi_isolation_source: placenta

ncbi_organism_name: Brucella abortus

ncbi_submitter: Sardarkrushinagar Dantiwada Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerostipes hadrus


ncbi_isolation_source: topsoil

ncbi_organism_name: Brevibacillus borstelensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Actinacidiphila glaucinigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Navamindradhiraj University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paenibacillus solani

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sulfurihydrogenibium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacterioplanes sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC058661


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 60 m

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_submitter: EBI


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CAU


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Ureibacillus galli

ncbi_submitter: Quadram Institutte


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA3973

ncbi_submitter: University of Queensland


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_submitter: RIVM


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Chloroflexota bacterium


ncbi_country: USA: Iowa

ncbi_isolation_source: Bovine urine

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: USDA


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Corynebacterium sp. KPL3806

ncbi_submitter: Baylor College of Medicine


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: wound right groin

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2023EL-00495


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090116-9m_bin-0864

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Sweden

ncbi_isolation_source: gut

ncbi_submitter: DTU


ncbi_isolation_source: Pre-flight (to International Space Station) Astronaut Skin Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_strain_identifiers: MYHL

ncbi_submitter: Beijing University of Agricluture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1492

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces sp. NPDC059496

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: United Kingdom:England


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Corynebacterium sp. HMSC072D01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Ilumatobacter sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: university of Ghent


ncbi_assembly_name: Rumen uncultured genome RUG14867

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: India: Vellore

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: France

ncbi_isolation_source: reactal swab

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Paraburkholderia sp. 40

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of South Africa


ncbi_country: China

ncbi_isolation_source: dust collection of the indoor air

ncbi_organism_name: Salinicoccus sp. YB14-2

ncbi_submitter: Laboratory of Extremophiles


ncbi_assembly_name: Rumen uncultured genome RUG10181

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Ghent University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_country: Lebanon

ncbi_isolation_source: Fresh Produce 7

ncbi_submitter: University of Wyoming


ncbi_organism_name: Streptomyces sp. NPDC056294

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG14766

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Montenegro

ncbi_isolation_source: Montengrin brine cheese

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Donja Gorica


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: wild seahorses (Hippocampus guttulatus)

ncbi_organism_name: Vibrio hippocampi

ncbi_strain_identifiers: BFLP-4;CECT 8226

ncbi_submitter: University of Valencia, Spain


ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Staphylococcus succinus

ncbi_strain_identifiers: Ngtc NS 4

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Treponema denticola

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Agrobacterium rosae

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI)


ncbi_organism_name: Chlorobium sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oceaniradius stylonematis


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-3118

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Genskey


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_submitter: Colorado State University


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Quaid-I-Azam University


ncbi_organism_name: Leuconostoc inhae

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: Italy: Lecco

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: EPFL


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar Greenside


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0424

ncbi_submitter: Broad Institute


ncbi_country: Ghana: Korle Bu

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Hubei

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Fibrobacterales bacterium Fibro_02


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa PAO1

ncbi_submitter: University of Liege


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: Caecum

ncbi_organism_name: Acutalibacter muris


ncbi_country: South Korea: Korea; Dalseo Stream

ncbi_organism_name: Kaistia dalseonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mali

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Namibia: Otavi

ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: Aarhus University


ncbi_isolation_source: screen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Oribacterium sp. HCP28S3_H8

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: environmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: South Korea

ncbi_isolation_source: lab-evolved strain

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea university


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacillus cereus group sp. Bce004

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce004


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Hong Kong

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans SM6

ncbi_submitter: Cornell University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Mexico

ncbi_isolation_source: Nodule

ncbi_organism_name: Herbaspirillum sp. LeCh32-8

ncbi_submitter: Instituto Politecnico Nacional


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella disiens

ncbi_submitter: BGI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Tyzzerella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_organism_name: Rhodobacter sp. BACL10 MAG-120910-bin24

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;x__Rhodobacter group;g__Rhodobacter;x__unclassified Rhodobacter;s__Rhodobacter sp. BACL10 MAG-120910-bin24


ncbi_country: Australia

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Marcell Experimental Forest

ncbi_isolation_source: soil

ncbi_organism_name: Acidimicrobiales bacterium UBA7543

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: WAGENINGEN UR


ncbi_country: Russia:St Petersburg

ncbi_isolation_source: cervical

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: effluent from poultry environment

ncbi_submitter: Institute for Medical Research Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Kutzneria buriramensis

ncbi_submitter: Univeristy of Bristol


ncbi_country: USA: New York

ncbi_isolation_source: symptomatic yellow onion

ncbi_organism_name: Rahnella aceris

ncbi_submitter: University of the West of England


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Spirulina sp.

ncbi_submitter: Sun Yat-sen University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_country: China: Wuhu; Anhui Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Paenibacillus anseongense

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Nonomuraea roseoviolacea subsp. carminata

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B125;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacillus cereus group sp. Bce032

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce032


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Brazil: Blumenau


ncbi_organism_name: Mycetocola sp. BIGb0189

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_submitter: University of Queensland


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Caulobacter rhizosphaerae

ncbi_submitter: Nanjing Forestry University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Leptolyngbya sp. DLM2.Bin15

ncbi_submitter: University of Calgary


ncbi_country: Germany: Aachen

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Nocardia sp. NPDC004168

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Kenya: Kisii

ncbi_organism_name: Escherichia coli

ncbi_submitter: USAMRD-A


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Taean

ncbi_organism_name: Ketobacter alkanivorans

ncbi_submitter: Chungbuk University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Federal Scientific Center of the East Asia Terrestrial Biodiversity

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_name: Rumen uncultured genome RUG384

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: chongqing

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MDR-CQF

ncbi_submitter: Chongqing People's Hospital


ncbi_isolation_source: cold seep

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: Chlamydia crocodili

ncbi_submitter: Mahidol University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Intrasporangium sp. DVR

ncbi_strain_identifiers: DVR

ncbi_submitter: Lab. of Microbial Engineering Graduate School of Horticulture, Chiba University


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Staphylococcus epidermidis VCU028

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pueribacillus sp. YX66


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_organism_name: Hoylesella enoeca

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemella morbillorum


ncbi_organism_name: Candidatus Palauibacter denitrificans

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter denitrificans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter denitrificans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: Sow

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N60268F

ncbi_submitter: FDA


ncbi_organism_name: Pseudoalteromonas neustonica

ncbi_submitter: Korea Polar Research Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1397

ncbi_submitter: Broad Institute


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China: Zhejiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-0894

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: Iowa

ncbi_isolation_source: cecum

ncbi_organism_name: Escherichia coli SWW33


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Department of Biosecurity PCL3


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Anaerolineales bacterium UBA2200

ncbi_submitter: University of Queensland


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Aphanothece sacrum FPU1

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_organism_name: Pseudomonas sp. Ps21-P2

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Affiliated Hospital of Jining Medical University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: NCSU Equine Educational Unit

ncbi_organism_name: Lactobacillus sp. 3B(2020)

ncbi_submitter: North Carolina State University


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Wenzhou medical university


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus bromii


ncbi_country: China

ncbi_isolation_source: fecal swab109

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Animal Disease Prevention and Food Safety Key Laboratory of Sichuan


ncbi_organism_name: Streptomyces tibetensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus USA_15

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Butantan Institute


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa

ncbi_isolation_source: breast milk

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 3-1


ncbi_isolation_source: water

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_organism_name: Neptunicoccus sediminis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_organism_name: Clostridium moutaii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolate: Previously collected from blood cultures (R)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3318

ncbi_submitter: University of Queensland


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Microbacterium sp. EYE_79

ncbi_submitter: China CDC


ncbi_assembly_name: IMG-taxon 2654588136 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hainan University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Togo et al. 2019)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Istituto di Scienze Biomediche della Difesa


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: MAMI


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_country: Australia: Streatham Pink Lake

ncbi_isolation_source: hypersaline water/sediment

ncbi_organism_name: Halomonas sp. SSL-5

ncbi_submitter: Griffith University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Texas

ncbi_isolation_source: bovine lung affected by bovine respiratory disease

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Fudan University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Portland State University


ncbi_country: Luxembourg: Schifflange; Anoxic tank no. 1

ncbi_isolation_source: anoxic tanks foaming sludge islets from the Schifflange communal wastewater treatment plant

ncbi_organism_name: Zoogloea sp. LCSB751

ncbi_submitter: Luxembourg Centre for Systems Biomedicine


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: carageenan 40-100 m particle (artificial) early colonization

ncbi_organism_name: Amphritea atlantica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: The University of Tennessee


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: freshwater MAG --- E14_bin-1922

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Astrakhan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Weissella confusa

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardioides zeae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P100P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Peru

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5885

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_isolation_source: human gut

ncbi_organism_name: Culturomica sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0348

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T74091


ncbi_organism_name: Candidatus Dormibacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;x__unclassified Candidatus Dormibacteraceae;s__Candidatus Dormibacteraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10288

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: gizzard

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Tulsa


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-206

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Russia: Moscow

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria sp. HKCCD7251

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Serbia

ncbi_isolation_source: breast

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Belgium: Ghent

ncbi_isolation_source: wetland

ncbi_organism_name: Methylomonas koyamae

ncbi_submitter: Ghent University


ncbi_organism_name: Microbacterium paraoxydans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Streptomyces sp. CCNWLW230

ncbi_submitter: Northwest A&F University


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_39_24


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Intrasporangium zincisolvens

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces massasporeus


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: USA: Arkansas

ncbi_isolation_source: wildtype obtained from ARisolateBank from CDC

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Sichuan

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Marinobacterium zhoushanense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. GB4-14

ncbi_submitter: NIDDK, NIH


ncbi_country: China: Hainan Province

ncbi_isolation_source: heart of pantropical spotted dolphin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Yersinia canariae

ncbi_submitter: University College Dublin


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABFQR

ncbi_submitter: NHGRI/NIH


ncbi_country: Switzerland

ncbi_isolation_source: ear

ncbi_organism_name: Auritidibacter ignavus

ncbi_strain_identifiers: IMMIB L-1656

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG