ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Omnitrophus sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Omnitrophus;x__unclassified Candidatus Omnitrophus;s__Candidatus Omnitrophus sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Contig

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_strain_identifiers: OTK

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: Konosirus punctatus

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella sp. 73548

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China

ncbi_isolation_source: DDT-contaminated soil

ncbi_organism_name: Pseudoxanthomonas jiangsuensis

ncbi_refseq_category: reference genome

ncbi_submitter: CSIR-Institute of Microbial Technology

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea: Jeju

ncbi_isolation_source: swinery waste

ncbi_organism_name: Melaminivora jejuensis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: Peri-renal abscess

ncbi_organism_name: Fusobacterium mortiferum ATCC 9817

ncbi_strain_identifiers: ATCC 9817

ncbi_submitter: Virginia Tech


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Austria: Vorarlberg

ncbi_isolation_source: feces

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured OM182 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;x__environmental samples;s__uncultured OM182 clade bacterium


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Isoptericola sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH16040

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: EMG


ncbi_submitter: University of Wyoming


ncbi_country: China: Fuzhou

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Legionella micdadei

ncbi_submitter: Chongqing Medical and Pharmaceutical College


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Rhode Island; Narragansett Bay

ncbi_isolation_source: Narragansett Bay

ncbi_organism_name: Synechococcus sp. NB0720_010

ncbi_submitter: Clark University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paraburkholderia sp. BL25I1N1

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Haemophilus sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: Washington University School of Medicine


ncbi_country: New Zealand

ncbi_isolation_source: routine screen

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolate: Gemmatimonadetes sp. RBC087

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_strain_identifiers: Gemmatimonadetes sp. RBC087

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Gemmatimonas sp.


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Singapore General Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__environmental samples;s__uncultured Candidatus Saccharimonadales bacterium


ncbi_organism_name: Candidatus Lloydbacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Lloydiibacteriota;x__unclassified Candidatus Lloydbacteria;s__Candidatus Lloydbacteria bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: DTU-CFB


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: uncultured Thermoguttaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: Benin: Plateau; Adja-ouere

ncbi_isolation_source: skin lesion

ncbi_organism_name: Mycobacterium ulcerans

ncbi_submitter: Alliance de Recherche sur les Maladies Infectieuses Nantes-Angers (ARMINA)


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Italy

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Intestinimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;x__environmental samples;s__uncultured Intestinimonas sp.


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Hudson Valley; NY

ncbi_isolation_source: stream

ncbi_organism_name: Janthinobacterium sp. BJB301

ncbi_submitter: GCAT-SEEK


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. P2431


ncbi_organism_name: Actinobacillus suis ATCC 33415

ncbi_submitter: University of Missouri


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: freshwater MAG --- Loc090402-1m_bin-0363

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


gtdb_type_species_of_genus: t

ncbi_organism_name: Saccharococcus thermophilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Roseburia sp. AM23-20

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: UCL

ncbi_isolation_source: Laboratory reference strain

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD L3b

ncbi_submitter: Chengdu University


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Poland: Opole

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_country: Kuwait

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia sp. 9773_38

ncbi_submitter: Kuwait University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Phycisphaera mikurensis NBRC 102666

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__Phycisphaeraceae;g__Phycisphaera;s__Phycisphaera mikurensis;x__Phycisphaera mikurensis NBRC 102666


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_country: China: Beijing

ncbi_isolation_source: milk from animal25

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Hebei University of Science & Technology


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium CG_4_9_14_3_um_filter_42_15


ncbi_country: Svalbard: Midtre Lovenbreen

ncbi_isolation_source: Polar soil

ncbi_organism_name: Pedobacter cryotolerans

ncbi_submitter: Kyonggi University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. Bp9016

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Panama: Bastimentos

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_country: South Korea:Jeongeup-si

ncbi_isolation_source: Canine feces

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CACC 566

ncbi_submitter: Center for Industrialization of Agricultural and Livestock Microorganisms


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Guangxi University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Freising

ncbi_organism_name: Anaerovibrio slackiae

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Brazil: Assis

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Texas

ncbi_isolation_source: Seed

ncbi_organism_name: Pantoea sp. B550

ncbi_submitter: TEXAS A&M UNIVERSITY


ncbi_country: Lebanon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: USA: Ann Arbor

ncbi_isolation_source: tooth brush holder

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Zhejiang University


ncbi_country: China: Xinjiang

ncbi_isolation_source: rhizosphere of crops

ncbi_organism_name: Stappia sp. WLB 29

ncbi_strain_identifiers: WLB 29

ncbi_submitter: Nanjing Normal University


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_country: Austria: Vienna

ncbi_isolation_source: heart; liver; intestine; lung

ncbi_organism_name: Morganella morganii

ncbi_submitter: University Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Cleveland; OH

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae KP-7

ncbi_submitter: JCVI


ncbi_country: China: Jiangsu

ncbi_isolation_source: abdominal dropsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Xanthomonas indica

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: Argentina

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Cold smoked salmon dry salted

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_submitter: China Agricultural University


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Monash University


ncbi_organism_name: Casimicrobiaceae bacterium


ncbi_organism_name: Variovorax sp. Varisp85

ncbi_submitter: North Carolina State University


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin7

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: KAP bin7


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA5109


ncbi_country: Russia: Moscow

ncbi_isolation_source: lumbar liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0708

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Yellow Sea/Jiaozhou Bay

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrosococcus wardiae

ncbi_submitter: Nitrification Network


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: metagenome


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: wastewater

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium UBA5155


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Pantoea sp.


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: gastric biopsy; soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Weizmann Institute


ncbi_organism_name: Aminobacterium mobile

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut

ncbi_organism_name: Clostridium butyricum

ncbi_strain_identifiers: HYCB

ncbi_submitter: State Key Laboratory of agricultural microbiology


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Argentina: Buenos Aires Suburb

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.488 MAG

ncbi_isolate: bin.488 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_strain_identifiers: bin.488 MAG

ncbi_submitter: IDAEA-CSIC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_submitter: UNC Chapel Hill


ncbi_country: India: Manipal

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira kmetyi

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: N.F. Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_strain_identifiers: P5 CL A 35

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: BGI


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Sweden: Goteborg

ncbi_isolation_source: Human oral cavity

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Aarhus University


ncbi_organism_name: Rhizobium sp. BK399

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guizhou

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Guangdong

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Avimicrobium faecavium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimicrobium;s__Candidatus Avimicrobium faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimicrobium;s__Candidatus Avimicrobium faecavium


ncbi_organism_name: Finegoldia sp.


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2595

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA: CA

ncbi_isolation_source: intestine kea

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Hong Kong

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Capnocytophaga ochracea DSM 7271

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga ochracea;x__Capnocytophaga ochracea DSM 7271


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Weihai

ncbi_organism_name: Marinomonas algarum

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shandong

ncbi_submitter: Shandong University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Asaia sp. VD9

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: offshore sediment

ncbi_organism_name: Isoptericola sp. S6320L

ncbi_submitter: Shandong University,Weihai


ncbi_country: China: Hubei province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces sp. NPDC052196

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rubrivirga sp. IMCC43871

ncbi_submitter: Inha University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: France

ncbi_isolation_source: Remains of reconstituted infant formula fed to infant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Spain

ncbi_isolation_source: Raw sausage

ncbi_organism_name: Latilactobacillus sakei

ncbi_strain_identifiers: TMW 1.2

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Fudan University


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Roseibium salinum

ncbi_strain_identifiers: CECT 8816

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Silvibacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: CIRAD


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Variovorax sp. LjRoot130

ncbi_submitter: Aarhus University


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_submitter: EMG


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp.


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Brazil: Petrolina;PE

ncbi_isolation_source: abscess of sheep with CLA

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal Universityof Minas Gerais


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Behind the ears

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: JCVI


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10929

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Portugal

ncbi_isolation_source: Male patient with Chronic Granulomatous Disease

ncbi_organism_name: Granulibacter bethesdensis

ncbi_submitter: Igenbio, Inc


ncbi_country: Russia: Moscow

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Veillonella parvula


ncbi_assembly_name: Rumen uncultured genome RUG14308

ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: IMG-taxon 2634166904 annotated assembly

ncbi_organism_name: Nocardioides scoriae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia

ncbi_organism_name: Photorhabdus australis DSM 17609

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_submitter: The Hebrew University of Jerusalem

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-325-E08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: leaves

ncbi_organism_name: Lysinibacillus tabacifolii

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: United Kingdom: Cheshire

ncbi_isolation_source: Cheshire; UK

ncbi_organism_name: Mycoplasma tullyi

ncbi_submitter: University of Florida


ncbi_country: Chile

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Icahn School of Medicine


ncbi_strain_identifiers: NCIB 3610

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10


ncbi_organism_name: Streptomyces sp. NBC_01276

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Japan:Tokyo; Minato-ku

ncbi_isolation_source: Circulating aquarium

ncbi_organism_name: Vibrio nigripulchritudo

ncbi_submitter: Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Andaman Islands

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Acinetobacter sp. MB5

ncbi_submitter: Indian Institute of Science Education and Research, Bhopal


ncbi_country: USA: IA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Hydrogenophilaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Methylophilales bacterium UBA4021

ncbi_submitter: University of Queensland


ncbi_isolation_source: cervical secretions

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Canada: Ontario

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Poultry Litter


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP25_C1_surf _bin _17

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP25_C1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC007818

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Oxydemutatoraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces rochei


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Bacillales bacterium UBA6769

ncbi_submitter: University of Queensland


ncbi_organism_name: Pimelobacter simplex

ncbi_submitter: university of minnesota


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA128

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA128

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: sea water

ncbi_organism_name: alpha proteobacterium MED-G09

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ethiopia: Oromiya; West shewa; Holeta

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas sp.


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Nebraska-Lincoln


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Beijing

ncbi_isolation_source: Oral swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: ICMR-National Institute of Occupational Health


ncbi_country: Canada: Lacombe

ncbi_organism_name: Holdemanella porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Cyanobacteria bacterium P01_A01_bin.135

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_A01_bin.135


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Trento


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Desulfurellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mucilaginibacter sp. CSA2-8R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_assembly_name: scaffolds

ncbi_country: Germany

ncbi_organism_name: Dietzia maris

ncbi_submitter: Jacobs University


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Guangdong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: biofilm sample

ncbi_organism_name: Aeromonas media

ncbi_submitter: Research center for Eco-environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Tang lab


ncbi_country: China: Taihu Lake

ncbi_isolation_source: sediment

ncbi_organism_name: Tsuneonella amylolytica

ncbi_submitter: Henan University of Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: England

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: India

ncbi_submitter: Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Pseudonocardiales;f__Pseudonocardiaceae;g__Amycolatopsis;x__Amycolatopsis japonica group;s__Amycolatopsis keratiniphila;sb__Amycolatopsis keratiniphila subsp. nogabecina


ncbi_organism_name: Salmonella sp. SAL04214

ncbi_submitter: Zhejiang university


ncbi_country: Guatemala

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Cardiobacterium hominis

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14922

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Arthrobacter sp. UM1

ncbi_submitter: University of Malaya


ncbi_country: Malawi: Lilongwe

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoferax sp. OV413

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Gygaella obscura

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Gygaella;s__Candidatus Gygaella obscura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Gygaella;s__Candidatus Gygaella obscura


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Palma de Mallorca

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC021749

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: Aeromonas sp. ZOR0002

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Czech Republic

ncbi_isolation_source: chicken meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: China: Changsha

ncbi_isolation_source: larval intestine

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hunan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Pseudoalteromonas sp. CuT4-3

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Ancylobacter defluvii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Armpit

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_submitter: Universidad de los Andes


ncbi_country: Belize: Carrie Bow Cay

ncbi_organism_name: Candidatus Thiosymbion oneisti

ncbi_submitter: University of Vienna


ncbi_organism_name: Mesoflavibacter zeaxanthinifaciens

ncbi_submitter: EMG


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Dalian Polytechnic University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universiti Sains Malaysia


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-1874

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Phocicoccus schoeneichii

ncbi_submitter: University of Minnesota


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_isolate: SPRUCE 554

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 554

ncbi_submitter: Georgia Institute of Technology


ncbi_isolate: AOP19_H1_surf _bin _10

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: AOP19_H1_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Salmonella sp. 2020_1241

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Paraburkholderia sp. Cpub6

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas aeruginosa C23

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Kyungpook National University


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nestle Research Center


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Aquarium water (zoo)

ncbi_organism_name: Vagococcus fluvialis


ncbi_country: Romania: Iasi

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIMI


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: water

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus gordonii

ncbi_strain_identifiers: FDAARGOS 1454


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Northern Atlantic

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Australia: New South Wales

ncbi_organism_name: Salmonella sp. SG118

ncbi_submitter: University of Technology Sydney


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Malaya


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: China: Qinghai

ncbi_organism_name: Apibacter sp. B3912

ncbi_submitter: China Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Stomatobaculum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: soil

ncbi_organism_name: Dehalogenimonas etheniformans

ncbi_strain_identifiers: GP

ncbi_submitter: University of Tennessee, Knoxville


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Israel

ncbi_isolation_source: host tissue

ncbi_submitter: University of California Irvine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. 116045


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella sp. S-L-S2792

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptococcus agalactiae CCUG 44110

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Streptococcus pneumoniae CDC1873-00

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: Staphylococcus aureus AH3

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA


ncbi_organism_name: Veillonella parvula

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0389

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Staphylococcus aureus M0590


ncbi_country: China: Jiangsu province

ncbi_isolation_source: mouse intestine 1group

ncbi_organism_name: Prevotellaceae bacterium UBA713

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Comoros: Grande Comore

ncbi_isolation_source: Citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Slovakia: Bratislava

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: beijing


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Clostridium sp. UBA1353


ncbi_organism_name: Candidatus Bruticola sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy: d__Bacteria;p__Vulcanimicrobiota;c__Candidatus Xenobia;o__Candidatus Xenobiales;f__Candidatus Xenobiaceae;g__Candidatus Bruticola;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;o__Candidatus Xenobiales;f__Candidatus Xenobiaceae;g__Candidatus Bruticola;x__unclassified Candidatus Bruticola;s__Candidatus Bruticola sp.


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Bartonella sp. CL436QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Olsenella uli DSM 7084

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli;x__Olsenella uli DSM 7084


ncbi_organism_name: Marinilactibacillus psychrotolerans

ncbi_submitter: Agroscope


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: National University of Singapore


ncbi_organism_name: Marinobacter sp. W-8

ncbi_submitter: College of Resources and Environment


ncbi_organism_name: uncultured Oleiharenicola sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Seoul National University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Gallibacterium melopsittaci

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: IMG-taxon 2639762662 annotated assembly

ncbi_organism_name: Leifsonia sp. 197AMF

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Thailand

ncbi_isolation_source: microbial mat from rice patty soil

ncbi_organism_name: Sphingopyxis terrae

ncbi_submitter: Institute of Hydrobiology, Biology Centre CAS


ncbi_assembly_name: IMG-taxon 2630968262 annotated assembly

ncbi_organism_name: Micromonospora cremea


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Marseille

ncbi_isolation_source: wound

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Brevibacteriaceae;g__Brevibacterium;s__Brevibacterium ravenspurgense;x__Brevibacterium ravenspurgense 5401308 = CCUG 53855

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Kenya

ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Tang lab


ncbi_country: China: Beijing

ncbi_isolation_source: postoperative intraabdominal drainage liquid

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Beijing Tsinghua Changgung Hospital


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium ramosum

ncbi_submitter: University of Parma


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: marine

ncbi_organism_name: Pseudoalteromonas sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Yongping; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_country: Germany: Jena

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. SZ57

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: PEL 72E

ncbi_submitter: UFRJ


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter skyensis

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus suis R61

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Portugal: The Azores

ncbi_isolation_source: hot spring

ncbi_strain_identifiers: Fur

ncbi_submitter: University of Bergen

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum


ncbi_country: USA

ncbi_isolation_source: Bronchial Alveolar lavage

ncbi_organism_name: Mycobacterium kubicae

ncbi_submitter: National Jewish Health


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater efflux

ncbi_submitter: University of Zurich


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Streptomyces sp. NPDC005732

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil

ncbi_organism_name: Nocardia nova

ncbi_submitter: University of Cambridge


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Paenalcaligenes sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Servula neotermitis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Candidatus Neomicrothrix parvicella

ncbi_submitter: CRC RESIST


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Laboratory environment

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Teikyo University Institute of Medical Mycology


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_organism_name: Acetobacter pasteurianus

ncbi_submitter: China University of Petroleum (East China)


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Zunongwangia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Italy: Panarea

ncbi_isolation_source: posidonien leaves

ncbi_organism_name: Symmachiella dynata

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Peptostreptococcus anaerobius


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_country: Hong Kong: Causeway Bay

ncbi_isolation_source: marine sediment

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_assembly_name: Salmonella enterica CVM N48690 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: OH

ncbi_isolation_source: milk (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: USA: St. Louis

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces galilaeus

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Caldatribacterium sp. SIUC1

ncbi_submitter: Southern Illinois University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Caldatribacterium;x__unclassified Candidatus Caldatribacterium;s__Candidatus Caldatribacterium sp. SIUC1


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Czechoslovakia

ncbi_organism_name: Bacillus thuringiensis serovar alesti

ncbi_strain_identifiers: BGSC 4C1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar alesti


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: Pond sample 4

ncbi_organism_name: Clostridium sp. VAP51

ncbi_submitter: KULeuven


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG