ncbi_organism_name: Cyanobacteria bacterium J06598_1

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06598_1


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient12 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Prevotella sp. C561

ncbi_submitter: Broad Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_assembly_level: Contig

ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Quaid-I-Azam University


ncbi_country: USA: Alabama

ncbi_isolation_source: trachea

ncbi_organism_name: Chromobacterium haemolyticum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Poland: Knurow

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Medicines Institute


ncbi_country: Bolivia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florence


gtdb_representative: t

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Pseudomonas sp. p99-361

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Providencia sp. PROV048

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Hungary: Budapest

ncbi_organism_name: Burkholderia mallei

ncbi_strain_identifiers: Budapest

ncbi_submitter: cBio Corp


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Poland

ncbi_isolation_source: clinical sample


ncbi_organism_name: Pseudomonas syringae pv. persicae

ncbi_strain_identifiers: NCPPB 2254

ncbi_submitter: Chinese Academy of Inspection and Quarantine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. persicae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: AAJWJ

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Illinois


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Enterobacter sp. 01-M-01-SI-ECC_S143

ncbi_submitter: Institut Pasteur de la Guadeloupe


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Paracoccus yeei

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: Temple University


ncbi_organism_name: uncultured Desulfonema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: USDA ARS


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0293

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Corynebacterium flavescens


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-286

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Nitrospira sp.

ncbi_strain_identifiers: new MAG-286

ncbi_submitter: Micoorganism


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinovum sp.

ncbi_submitter: EMG


ncbi_organism_name: Polyangiaceae bacterium


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01665

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01665


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1538

ncbi_submitter: Broad Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: bacterium UBP8_UBA7324

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP8_UBA7324


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus peoriae

ncbi_submitter: Cornell University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas lini

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of Medicine


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 456

ncbi_submitter: INRA STLO


ncbi_assembly_name: freshwater MAG --- Umea_bin-10000

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: China: Beijing

ncbi_isolation_source: root of maize

ncbi_organism_name: Caulobacter radicis

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroides uniformis

ncbi_strain_identifiers: ATCC 8492

ncbi_submitter: Stanford University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Toho University


gtdb_type_species_of_genus: t

ncbi_isolation_source: Bulking activated sludge of pickle manufacturing wastewater treatment plant of pickle manufacturing; Japan

ncbi_organism_name: Thiofilum flexile DSM 14609

ncbi_refseq_category: reference genome


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: Czech Republic: Mohelno

ncbi_isolation_source: sediment with water of forest creek

ncbi_organism_name: Acinetobacter sp. ANC 5054

ncbi_submitter: National Institute of Public Health


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Japan: Nara Prefecture

ncbi_isolation_source: soil

ncbi_organism_name: Kitasatospora griseola

ncbi_submitter: University of Prince Edward Island


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Kuwait

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hangzhou Minsheng Healthcare Co., Ltd.


ncbi_country: USA: farm land in Gulf Coast of Texas

ncbi_isolation_source: A bacterial consortium from cattle pasture soil; USA

ncbi_organism_name: Cupriavidus sp. KK10

ncbi_submitter: Yokohama City University


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Belgium: Antwerp

ncbi_organism_name: Mycobacterium sp. 96-892

ncbi_submitter: LNCC


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Chitinivibrionales bacterium

ncbi_submitter: University of New South Wales


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Roseovarius conchicola

ncbi_submitter: Hannam University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: metagenome

ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: France: Aix en Provence

ncbi_organism_name: Enterococcus faecium EnGen0158

ncbi_submitter: Broad Institute


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13112

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_assembly_level: Chromosome

ncbi_country: Australia: Adelaide

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Adelaide


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bulleidia extructa W1219

ncbi_submitter: JCVI


ncbi_assembly_name: IMG-taxon 2615840601 annotated assembly

ncbi_organism_name: Cohaesibacter sp. ES.047

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India: Rajsthan

ncbi_isolation_source: Rectal swab

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Roseburia hominis


ncbi_organism_name: Vreelandella venusta

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 676

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_isolate: SPRUCE 156

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 156

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC090051

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Roseburia faecis


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Japan: AIST Tsukuba

ncbi_isolation_source: sediments of haloalkaline soda lakes

ncbi_organism_name: Natroniella sulfidigena

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_country: Spain

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CHU A Coruna


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_submitter: Stavanger University Hospital


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_assembly_name: Rumen uncultured genome RUG244

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NE

ncbi_isolation_source: porcine pig intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1035

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Ghent University


ncbi_country: India: Hyderabad

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Vellore Institute of Technology


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx21393

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Pretoria


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: foul brood

ncbi_strain_identifiers: ERIC_II;DSM 25430

ncbi_submitter: Leibniz Institute DSMZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus larvae;sb__Paenibacillus larvae subsp. larvae;x__Paenibacillus larvae subsp. larvae DSM 25430


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_organism_name: Variovorax atrisoli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_organism_name: Gilvimarinus chinensis DSM 19667


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Silanimonas lenta

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Portugal: Azores; Ribeira Quente; Sao Miguel

ncbi_isolation_source: anaerobic hot sediment

ncbi_organism_name: Thermotoga sp. RQ7

ncbi_submitter: Bowling Green State University


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Chinese Academy of Science


ncbi_country: South Korea: Seoul

ncbi_isolation_source: carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungbuk National University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_assembly_name: freshwater MAG --- Ja2_bin-0109

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_isolation_source: intestinal content

ncbi_submitter: ChinaCDC


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli BIDMC 20A

ncbi_strain_identifiers: BIDMC 20A

ncbi_submitter: Broad Institute


ncbi_submitter: National institutes of Food and Drug Control


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bifidobacterium favimelis

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering


ncbi_country: Portugal

ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: BCA

ncbi_submitter: I3S - Instituto de Investigacao e Inovacao em Saude


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China:Qaidam basin

ncbi_isolate: soil

ncbi_isolation_source: Qaidam basin

ncbi_organism_name: Salinicoccus halodurans

ncbi_submitter: Institute of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Republic of Tatarstan

ncbi_isolation_source: potato rhizosphere

ncbi_organism_name: Pseudomonas sp. MG-2

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces aurantiacus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France

ncbi_organism_name: Saccharibacillus deserti

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: Guyana

ncbi_isolate: Faeces/Commensal

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: USA: IL

ncbi_isolation_source: environmental swab sponge bakery hallway

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA5936

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: infant feces

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Wecare Probiotics CO.,Ltd


ncbi_organism_name: Aneurinibacillus thermoaerophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Colombia

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: USA: Kansas City

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. 2018MI01

ncbi_submitter: Texas Tech University


ncbi_assembly_name: Rumen uncultured genome RUG12158

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_submitter: University of Toronto


ncbi_country: USA: WI

ncbi_organism_name: Bordetella parapertussis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Mycobacterium sp. JS623

ncbi_submitter: JGI


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: uncultured Clavibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Nigeria

ncbi_isolation_source: environmental

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: United Kingdom: Scotland; Aberdeen Royal Infirmary

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dickeya dianthicola NCPPB 453

ncbi_strain_identifiers: NCPPB 453

ncbi_submitter: James Hutton Institute


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Clostridium perfringens C str. JGS1495

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium perfringens;x__Clostridium perfringens C;x__Clostridium perfringens C str. JGS1495


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: Denmark

ncbi_isolation_source: fish larvae aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: aspirate

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_submitter: Faculty of medecine and pharmacy RABAT


ncbi_country: Spain: Huelva

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: FNCPS 23

ncbi_submitter: HSE University


ncbi_organism_name: Cellulomonas sp. NPDC058312


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Collinsella bouchesdurhonensis


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_organism_name: Brucella anthropi

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_isolate: AOP24_D1_surf _bin _22

ncbi_strain_identifiers: AOP24_D1_surf _bin _22

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanjing University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paraclostridium sordellii


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Ferruginibacter sp.


ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Candidatus Rhabdochlamydia porcellionis

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia porcellionis


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Beijing

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium CG08_land_8_20_14_0_20_50_21


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Umea university


ncbi_submitter: Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri;x__Mycoplasma mycoides subsp. capri LC;x__Mycoplasma mycoides subsp. capri LC str. 95010


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Woods Hole

ncbi_isolation_source: polyp tissue

ncbi_organism_name: Pseudoalteromonas sp. P1-30

ncbi_submitter: Hans Knoell Institute


ncbi_country: South Korea: East Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudohongiella acticola

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: South Korea: Changwon

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Yonsei University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: Yunnan Agricultural University


ncbi_country: India

ncbi_isolation_source: lung

ncbi_submitter: San Diego State University


ncbi_organism_name: Bacteroides heparinolyticus


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Human saliva

ncbi_organism_name: Lachnoanaerobaculum orale

ncbi_submitter: EMG


ncbi_isolate: chicken fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EPFL


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: China: Tengchong

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermomicrobium sp. CFH 73360

ncbi_submitter: Xinxiang Medical University


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Austria: Rutzenham

ncbi_isolation_source: freshwater from a creek

ncbi_organism_name: Aquirufa ecclesiirivi

ncbi_submitter: University of Innsbruck


ncbi_country: Russia: Samara region

ncbi_isolation_source: Omelet

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Lysobacter sp. Root604

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Nebraska

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1856R

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Antarctica

ncbi_isolation_source: stone fragments

ncbi_organism_name: Pseudomonas petrae

ncbi_submitter: Masaryk University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Yangzhou University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Reinekea forsetii

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: stream water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Shandong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Chryseobacterium gleum ATCC 35910

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;s__Chryseobacterium gleum;x__Chryseobacterium gleum ATCC 35910


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. Angola-30

ncbi_submitter: Michigan Technological University


ncbi_isolation_source: Hypha of fungus

ncbi_organism_name: Mycoavidus cysteinexigens

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: China: Meishan

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Southwest University


ncbi_isolation_source: Korean traditional kimchi

ncbi_strain_identifiers: KCTC 3681

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus;s__Companilactobacillus farciminis;x__Companilactobacillus farciminis KCTC 3681 = DSM 20184


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: mastitic milk

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: EC IMI 33

ncbi_submitter: UNICAMP


ncbi_country: Indonesia

ncbi_isolation_source: young leaves

ncbi_organism_name: Xanthomonas euvesicatoria pv. eucalypti

ncbi_strain_identifiers: BCC 972

ncbi_submitter: Univeristy of Florida


ncbi_country: China: Dongguan

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 17E603

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: garden soil

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Streptomyces sp. NPDC051784

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_organism_name: Bacillales bacterium UBA743

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__unclassified Bacillales;s__Bacillales bacterium UBA743


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North South University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Pseudomonas sp. R4-75

ncbi_submitter: KAUST


ncbi_organism_name: Klebsiella sp. 1RDBk3mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_country: Russia: Nizhny Novgorod

ncbi_isolation_source: cervical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Federal Medical and Biological Agency SRI of Physical-Chemical Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina

ncbi_isolation_source: cheese

ncbi_submitter: IBR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7750

ncbi_submitter: University of Queensland


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Australia: Sydney

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes communis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: surface soil of a manganese mine

ncbi_organism_name: Arthrobacter sp. QXT-31

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: Russia: Tula

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_country: China

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Algeria: Gara Djebilet Sand

ncbi_isolation_source: crushed rocks in Gara Djebilet Iron Mine

ncbi_organism_name: Streptomyces ficellus

ncbi_submitter: University of New Hampshire


ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Helicobacter rodentium


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: Taiwan

ncbi_submitter: national health research institutes


ncbi_country: Poland: Myslowice

ncbi_isolation_source: underground coal mine water

ncbi_organism_name: Streptomyces sp. MW-W600-10

ncbi_submitter: University of Silesia in Katowice


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Sainte-Clotilde; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sichuanensis

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk filter

ncbi_submitter: CSIRO


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-I23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Chlamydia trachomatis C/TW-3

ncbi_submitter: National Institute of Health, Portugal


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_organism_name: uncultured Paraperlucidibaca sp.

ncbi_submitter: EMG


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8431

ncbi_submitter: Chinese University of Hong Kong


ncbi_submitter: University of Pretoria


ncbi_organism_name: Nocardioides psychrotolerans

ncbi_submitter: Biology Centre CAS


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Desulfovibrio piger


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UC San Diego


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseibium sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV225

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Citrobacter meridianamericanus

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3497

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Ligilactobacillus murinus

ncbi_strain_identifiers: LAC

ncbi_submitter: King's College London


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Indiana

ncbi_submitter: University of California at Davis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: OR

ncbi_isolation_source: chicken breast

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: ATCC 9224

ncbi_submitter: Los Alamos National Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG11595

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Herbaspirillum sp. SJZ106

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-C-LB3

ncbi_submitter: Arkin Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020033020

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Chinese Academy of Sciences, Institute of Microbiology


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Variovorax sp. AFSI2.2

ncbi_submitter: AFEPASA SAU


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Stenotrophomonas sp. FR010

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Rhizobium brockwellii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Streptomyces rimosus


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: National Dairy Research Institute, Karnal


ncbi_organism_name: Chryseomicrobium palamuruense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Kiloniellales bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: CNPSo 34

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: India

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-299

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Ignavibacteria bacterium

ncbi_strain_identifiers: new MAG-299

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Tanzania

ncbi_isolation_source: insect associated with banana plant

ncbi_organism_name: Xanthomonas sacchari NCPPB 4393

ncbi_strain_identifiers: NCPPB 4393

ncbi_submitter: The University of Exeter


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: China: Beijing

ncbi_isolation_source: infected leaves

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii 44467_2

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: University of Debrecen


ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S040_44862

ncbi_submitter: Zhejiang University


ncbi_organism_name: Luteolibacter pohnpeiensis

ncbi_submitter: Shandong university


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: Puia sp.


ncbi_country: USA

ncbi_isolation_source: waste water

ncbi_organism_name: Paraclostridium ghonii

ncbi_strain_identifiers: NCTR 3900

ncbi_submitter: NCTR/FDA


ncbi_assembly_name: Salmonella enterica CVM N48689 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shandong Second Medical University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Kofleriaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa CF614

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB07

ncbi_submitter: Soochow University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: University of Tasmania


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phyllobacterium ifriqiyense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Tianjin

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Tianjin Academy of Agricultural Sciences


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: throat swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW300-N1B4

ncbi_submitter: Arkin Lab


ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: Rumen uncultured genome RUG14422

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: metagenome

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Jawaharlal Nehru University


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Japan: Sagami Bay

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W25797

ncbi_submitter: Broad Institute


ncbi_country: Fiji

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Lactobacillus crispatus

ncbi_strain_identifiers: VHProbi E04

ncbi_submitter: Qingdao Vland Biotech Group Co., Ltd


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Brazil: Sao Carlos

ncbi_isolation_source: blood

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_isolation_source: collective feces

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: USA

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Thermosynechococcus sp. TG215

ncbi_submitter: Academia Sinica


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: soda lake with high salinity

ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology


ncbi_country: Canada: Alberta

ncbi_isolation_source: coal bed cutting

ncbi_organism_name: Cyanobacteria bacterium UBA4093

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA4093


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Avoscillospira sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Avoscillospira;x__unclassified Candidatus Avoscillospira;s__Candidatus Avoscillospira sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Parvibaculales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_assembly_name: freshwater MAG --- E-2_bin-269

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Guangzhou

ncbi_submitter: Traditional Chinese medicine University


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Teat swab

ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Zurich


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2223MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human skin

ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMPLIFY consortium


ncbi_country: USA: Oklahoma

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_isolation_source: chicken carcass rinse

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Universidade Federal do Para


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Psychrobacter sp. UBA2071


ncbi_country: China: The East China Sea

ncbi_isolation_source: Near bottom seawater

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: freshwater

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Indonesia

ncbi_isolation_source: Indonesia

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: WA

ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002060


ncbi_organism_name: Kocuria sabuli

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Bundang

ncbi_isolation_source: infant feces

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Cellulosimicrobium sp. NPDC055967

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 10 to 15cm

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: radionuclide-contaminated soil

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: CEA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Arkansas Broiler farm

ncbi_isolation_source: bone

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: Rickettsia slovaca str. D-CWPP

ncbi_strain_identifiers: D-CWPP

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia slovaca;x__Rickettsia slovaca str. D-CWPP


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Goettingen; German Primate Center

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Kaiserslautern


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kazan

ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Trunk River; Woods Hole; Massachusetts

ncbi_isolation_source: microbial mat from estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Department of Biology, Washington University in St. Louis


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Clostridium algidicarnis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.


ncbi_country: USA

ncbi_isolation_source: environment; non-food

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Accumulated dirt at foot of stairs near Artist s Center Bldg.; Akasaka District

ncbi_organism_name: Sporosarcina sp. P25

ncbi_submitter: University of Arizona


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-323

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-323


ncbi_isolation_source: bronchial washing

ncbi_organism_name: Pseudomonas sp. HMSC060F12

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Palolo Valley Trail; Honolulu; Hawaii

ncbi_isolation_source: mud from waterfall

ncbi_organism_name: Scytonematopsis contorta HA4267-MV1

ncbi_submitter: University of California, Riverside


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Italy: Bolzano

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: USA: Kennedy Space Center; Payload Hazardous Servicing Facility

ncbi_isolation_source: Cleanroom facility for spacecraft assembly

ncbi_organism_name: Deinococcus phoenicis

ncbi_submitter: University of Houston


ncbi_country: China: Shenzhen

ncbi_organism_name: Eubacterium sp. AF34-35BH

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF34-35BH


ncbi_organism_name: uncultured Halomonas sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Canada: London

ncbi_isolation_source: parent strain CV601 collected from dairy manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Western University


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: Malaysia

ncbi_isolation_source: blood sample of melioidosis patient

ncbi_organism_name: Burkholderia pseudomallei CS

ncbi_strain_identifiers: CS

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_organism_name: Streptococcus agalactiae GB00651

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: sorialis

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Pseudomonas sp. 165

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Comamonas thiooxydans


ncbi_country: Japan

ncbi_isolation_source: graft infection

ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E2748

ncbi_submitter: HongKong University of Science and Technology


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: CLUE-TERRA


ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus sp. AZ088

ncbi_submitter: Broad Institute


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBL


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brucella abortus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Azospirillum sp. ST 5-10

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_submitter: Monash University


ncbi_organism_name: Paenibacillus sp. GCM10023252

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0784

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium