ncbi_country: Denmark: Kongens Have park; diseased horse chestnut tree

ncbi_organism_name: Pseudomonas amygdali pv. aesculi

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. aesculi


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Ireland

ncbi_genome_representation: full

ncbi_isolation_source: Animal (Swine)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 57.A.08


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: USA: Chesapeake Bay

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Parafilimonas sp.

ncbi_submitter: Clemson University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Mimosa caesalpiniifolia; root nodule

ncbi_organism_name: Paraburkholderia sabiae

ncbi_submitter: LM-UGent

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Comenius University Science Park


gtdb_type_species_of_genus: t

ncbi_organism_name: Caecibacter massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: SC


ncbi_isolate: AOP36_E1_surf _bin _21

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP36_E1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. C3306

ncbi_submitter: Sichuan University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Capsulimonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Second Medical University


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: cold seep

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5170

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India:Cochin; Kalamasery retail Market

ncbi_isolation_source: prawn

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Senegalimassilia sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Guangxi

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_level: Chromosome

ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: laboratory derived transposant

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_assembly_name: IMG-taxon 2698536811 annotated assembly

ncbi_organism_name: Agromyces cerinus subsp. cerinus

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Mobiluncus mulieris ATCC 35243

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sugarcane root

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Acetivibrio straminisolvens JCM 21531

ncbi_submitter: The University of Tokyo


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae KP2-R

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Xiamen University


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: New Zealand: South Island; Marlborough; Capsize Point

ncbi_isolation_source: marine sponge

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: VICTORIA UNIVERSITY WELLINGTON


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan

ncbi_isolation_source: CSF

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: South Africa: Eshowe

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0045

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas hunanensis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_country: USA: Atlanta

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Utrecht University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_country: China: Tibet Autonomous Region; Lhasa City

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter sp. Y-19

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Firmicutes bacterium CAG:341

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:341


ncbi_country: Poland: Bialowieza National Park

ncbi_organism_name: Trueperella bonasi

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany

ncbi_isolation_source: minced meat

ncbi_organism_name: Rahnella inusitata

ncbi_submitter: NCAUR-ARS-USDA


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces tritrimontium

ncbi_submitter: University of Gdansk


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptococcus pyogenes ABC020014925

ncbi_submitter: Broad Institute


ncbi_organism_name: Chthonomonas sp.

ncbi_submitter: Stockholm University


ncbi_submitter: Nankai University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: Germany: Munich

ncbi_isolation_source: sewage sludge

ncbi_organism_name: Neochlamydia sp. TUME1

ncbi_submitter: University of Vienna


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Australia: Sydney

ncbi_isolation_source: Westmead hospital

ncbi_submitter: Macquarie University


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9032

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Rickettsia helvetica

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: IMG-taxon 2599185325 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC56-3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Kenya

ncbi_organism_name: Candidatus Segatella albertsiae

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 412

ncbi_submitter: Ghent University


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_submitter: National Research and Innovation Agency


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paenibacillus farraposensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Sporolactobacillus sp.

ncbi_submitter: Cornell University


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Smithellaceae bacterium


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V38_P2S17PM301

ncbi_submitter: Instituto de ecologia


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_country: Japan:Nahari River

ncbi_isolation_source: gill

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Kochi University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Panama

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China

ncbi_isolation_source: pit mud of Chinese Luzhou-flavor liquor production

ncbi_organism_name: Clostridium swellfunianum

ncbi_submitter: Yunnan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Burkholderia sp. lyk4-R2A-23

ncbi_submitter: University of Chicago


ncbi_organism_name: Acidiphilium cryptum JF-5

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Hong Kong

ncbi_isolation_source: abscess

ncbi_organism_name: Pseudostreptobacillus hongkongensis

ncbi_submitter: Robert Koch Institute


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: PA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Pennsylvania State University


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mesorhizobium sp. M1378

ncbi_submitter: Washington State University


ncbi_country: Thailand

ncbi_organism_name: Xenorhabdus sp. PB30.3

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Mexico: Chihuahua

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: Salmonella enterica CVM 43830 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Streptococcus agalactiae LMG 15095

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. BRX8-4

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: South China Agriculture University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- F14_bin-0208

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_isolation_source: blood culture

ncbi_organism_name: Klebsiella pneumoniae KP4-R

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: USA: MI

ncbi_isolation_source: cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_assembly_name: IMG-taxon 2675903035 annotated assembly

ncbi_organism_name: Nitrosomonas sp. Nm166

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: BGI


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Waterloo


ncbi_country: Nigeria

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: JCVI


ncbi_country: Israel: Haifa

ncbi_isolation_source: linalool selective pressure

ncbi_strain_identifiers: LASS

ncbi_submitter: Technion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_assembly_name: freshwater MAG --- Ja_bin-1756

ncbi_isolation_source: lake water

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M77229

ncbi_submitter: Broad Institute


ncbi_country: USA: Oregon; Netarts Bay

ncbi_isolation_source: Shellfish Hatchery

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Oregon State University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Acetobacter lovaniensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Back Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-259

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_strain_identifiers: new MAG-259

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Niger

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Cardiff University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: Monash University


ncbi_organism_name: Enterococcus sp. C48

ncbi_submitter: Northwest A & F University


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Arkhangelsk

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Ruegeria sp. HKCCD7296

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: P3 CL A14

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Japan

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Aliivibrio sp. 1S175

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Salmonella sp. NW1231

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces olivaceus


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_country: Benin: Central and Northern Agroecological Zone

ncbi_isolation_source: Rhizosphere of maize plants

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: North West University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_submitter: China-Japan Friendship Hospital


ncbi_assembly_name: uncultured DT-68 Mycoplasmoidales LS06H_Bin3

ncbi_isolation_source: Octocoral

ncbi_organism_name: uncultured bacterium

ncbi_submitter: iBB-IST


ncbi_organism_name: uncultured Candidatus Nanopelagicus sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__environmental samples;s__uncultured Candidatus Nanopelagicus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA: Boston; MA

ncbi_isolation_source: drainage

ncbi_organism_name: Staphylococcus aureus M0746

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_organism_name: Vibrio sp. Vb5035

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Viet Nam

ncbi_isolation_source: laboratory selection

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Factory - Packaging

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_country: Russia: Buryats

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA1_47_8


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Pseudobacteroides sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Tenuifilaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13791

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Aliarcobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Streptomyces sp. NBC_01723

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: The University of Queensland


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: bacterium


ncbi_country: Portugal

ncbi_isolation_source: CF

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Thalassobium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: bile

ncbi_submitter: Zhejiang university


ncbi_organism_name: Chitinophaga dinghuensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Austria: Seekirchen

ncbi_isolation_source: Rain barrel 2

ncbi_organism_name: Aquirufa nivalisilvae

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Dusseldorf

ncbi_isolation_source: Water work

ncbi_organism_name: Mycobacteroides franklinii

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Yan an

ncbi_organism_name: Boseaceae bacterium BT-24-1

ncbi_submitter: Yan'an University


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Bacillus sp. FSL L8-0642

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0642


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-G20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: New York

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MSKCC


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter trogontum

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: China: Shenzhen; Longhua

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Hunan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: sl

ncbi_submitter: Guangzhou Women and Children's Medical Center


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_country: South Korea: Anseong

ncbi_isolation_source: ginseng cultivating soil

ncbi_organism_name: Nocardioides anomalus

ncbi_submitter: Hankyong National University


ncbi_submitter: New York Medical College


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_submitter: Chung-Ang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;s__Leuconostoc mesenteroides;sb__Leuconostoc mesenteroides subsp. mesenteroides;x__Leuconostoc mesenteroides subsp. mesenteroides J18


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium


ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus xylosus NJ

ncbi_strain_identifiers: NJ

ncbi_submitter: Zhejiang University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterovibrio makurazakiensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-449

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_submitter: Indian Institute of Technology Jodhpur


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Paenibacillus sp. FSL H8-0261

ncbi_submitter: Penn State


ncbi_organism_name: Lactobacillus gasseri

ncbi_strain_identifiers: VHProbi E09

ncbi_submitter: Qingdao Vland Biotech Group Co., Ltd


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- D14_bin-0152

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_submitter: University of California, Berkeley


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Brazil: Amazonas; Manaus

ncbi_isolation_source: oral cavity

ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: Amazonas State University


ncbi_country: Italy: Milano

ncbi_isolation_source: stool sample from Salmonellosis patient

ncbi_submitter: Universita degli Studi di Milano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Napoli


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: anaerobic sludge

ncbi_organism_name: Flexilinea flocculi

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Anaerococcus degeneri

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Streptomyces sp. NPDC048281

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:Alaska; North Slope; Schrader Bluff formation

ncbi_isolation_source: oil reservoir sample SB1

ncbi_organism_name: Mesotoga infera

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Burkholderia oklahomensis


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_assembly_name: IMG-taxon 2599185305 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC07-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: ITG P1

ncbi_submitter: INRA STLO


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_isolation_source: mutant of ATCC 15926

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_country: Spain

ncbi_organism_name: Brucella sp. F5/06

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Jinju

ncbi_isolation_source: common laboratory strain

ncbi_organism_name: Escherichia coli DH5[alpha]

ncbi_submitter: Korea Advanced Institute of Science and Technology


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Portugal: Almada

ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France: Paris; Pasteur Institute

ncbi_strain_identifiers: BCG Romania

ncbi_submitter: National Institute of Research Cantacuzino

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Sandarakinorhabdus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: SC


ncbi_country: USA: OH

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia sp. MOD1-EC4516

ncbi_submitter: FDA/CFSAN


ncbi_country: Turkey

ncbi_isolation_source: WWTP

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FAMERP


ncbi_isolation_source: gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: Pakistan

ncbi_isolation_source: stool from child

ncbi_submitter: Lurie Children's/Northwestern


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Clostridiaceae bacterium UBA4828

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Candidatus Humimicrobiaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Humimicrobiaceae;x__unclassified Candidatus Humimicrobiaceae;s__Candidatus Humimicrobiaceae bacterium


ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_country: Portugal: Ria de Aveiro; Aveiro

ncbi_organism_name: Salinicola halophyticus

ncbi_submitter: Universidade de Aveiro


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_isolation_source: root nodule

ncbi_organism_name: Frankia tisae

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Copenhagen


ncbi_country: China: Hainan

ncbi_isolation_source: Blood;Aneurysm tissue

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: BGI


ncbi_organism_name: Mollicutes bacterium SLUWU-24

ncbi_submitter: Crustoplasma sp. SLUWU-24

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__unclassified Mollicutes;s__Mollicutes bacterium SLUWU-24


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: blood

ncbi_submitter: Children's Mercy Kansas City


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Butyricimonas synergistica

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Bacteroides] pectinophilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Streptococcus salivarius


ncbi_organism_name: Streptomyces sp. NPDC059083

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Hydrogenophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Wroclaw University of Environmental and Life Sciences


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Deferribacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: E coli IVRI_FBI_607

ncbi_organism_name: Escherichia coli

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: EPFL


ncbi_organism_name: Glutamicibacter sp. FR1

ncbi_submitter: Langfang Normal University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: Abattoir

ncbi_submitter: International Livestock Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Shanghai Children's Hospital


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_isolation_source: groundwater

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Acetoanaerobium sticklandii

ncbi_submitter: Ocean University of China


ncbi_assembly_name: Salmonella enterica CVM 43811 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Chongzhou

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum


ncbi_isolate: metabat2_pooled_hifiasm.905 MAG

ncbi_strain_identifiers: metabat2_pooled_hifiasm.905 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter towneri


ncbi_country: China: Zhanjiang

ncbi_isolation_source: Cold noodle

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: sulfidic marine water cellulose enrichment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Lachnospiraceae bacterium 6_1_63FAA

ncbi_submitter: Broad Institute


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCLR17_039

ncbi_submitter: University of California, Irvine


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rathayibacter sp. Leaf294

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_country: Kyrgyzstan

ncbi_organism_name: Coxiella burnetii str. Schperling

ncbi_strain_identifiers: Schperling

ncbi_submitter: Central Veterinary Institute part of Wageningen UR


ncbi_country: France

ncbi_isolation_source: lymph node

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: roots

ncbi_organism_name: Pseudoxanthomonas helianthi

ncbi_submitter: nanjing agriculture university


ncbi_country: China: Guangdong

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Malaysia

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai East Hospital


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Psychrobacter sp 72-O-c

ncbi_isolate: Psychrobacter sp. 72-O-c

ncbi_isolation_source: pond mud

ncbi_organism_name: Psychrobacter sp. 72-O-c

ncbi_strain_identifiers: Psychrobacter sp. 72-O-c

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: sewage

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_country: Germany: Frankfurt

ncbi_organism_name: Brucella sp. 09RB8471

ncbi_submitter: Viginia Tech University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: Bacteroides xylanisolvens SD CC 2a

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 2a


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Anaeroplasma sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Pyramidobacter piscolens

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F20115

ncbi_submitter: Broad Institute


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas sp. UBA7336

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Australia: Victoria; Melbourne

ncbi_isolation_source: leaves and stems

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_country: USA: WA

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Butyricicoccus avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JMI Laboratories


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Reims


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: Segatella copri

ncbi_submitter: University of Chicago


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Radboudumc


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Zurich


ncbi_organism_name: Roseiterribacter gracilis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_isolation_source: stool

ncbi_organism_name: Enorma shizhengliae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Alteromonas sp. S005

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC048370

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: The Ohio State University


ncbi_submitter: Kansas State University


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Lysobacter sp. ISL-50

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_isolation_source: environmental

ncbi_organism_name: Mesorhizobium sp. C432A

ncbi_submitter: Washington State University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: SPRUCE 307

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 307

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Limosilactobacillus reuteri subsp. suis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Paenibacillus phoenicis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Chang Gung University


ncbi_organism_name: Methylorubrum rhodesianum

ncbi_submitter: SciBear OU


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolate: Alphaproteobacteria sp. RBC037

ncbi_isolation_source: wastewater biofilm

ncbi_strain_identifiers: Alphaproteobacteria sp. RBC037

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Kenya

ncbi_organism_name: Firmicutes bacterium UBA5911

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5911


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Florida

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_organism_name: Escherichia coli

ncbi_submitter: beijing


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: California; Modesto

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Eubacterium sp. CAG:180

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:180


ncbi_organism_name: Streptomyces sparsogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India: New Delhi

ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Indian Agricultural Research Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: blown cheese

ncbi_organism_name: Loigolactobacillus bifermentans

ncbi_submitter: Korea University


ncbi_isolation_source: urine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: California Department of Public Health


ncbi_country: USA: Illinois; Chicago; University of Chicago; Botany Pond

ncbi_isolation_source: frehwater Caulobacter isolate from Botany Pond; University of Chicago

ncbi_organism_name: Caulobacter sp. BP25

ncbi_submitter: The University of Chicago


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Hubei

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-13

ncbi_submitter: Curtin University


ncbi_country: USA: Naperville; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Niameybacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Giovannonibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;x__unclassified Candidatus Giovannonibacteria;s__Candidatus Giovannonibacteria bacterium


ncbi_country: Colombia: Bucaramanga

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: India

ncbi_isolation_source: raw shrimp

ncbi_submitter: Health Canada


ncbi_organism_name: Streptomyces sp. RG80

ncbi_submitter: Korea Institute of Industrial Technology


ncbi_assembly_name: Salmonella enterica CVM N38925-SQ v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: unknown

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: the hong kong university of science and technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: China: Gaungdong

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Baltimore; MD

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: St. Louis; Missori

ncbi_submitter: Washington University


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_country: Netherlands

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Groningen


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: jiangnan


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: South Africa: Durban

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_country: USA: Hanover NH Dartmouth

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: San Diego; CA

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Fairy Springs; Yellowstone National Park; Wyoming

ncbi_organism_name: Synechococcus sp. PCC 6717

ncbi_submitter: universite-paris-saclay


ncbi_country: USA

ncbi_isolation_source: respiratory

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Israel

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Brevibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Xanthomonas floridensis

ncbi_strain_identifiers: WHRI 8848

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Roseobacter sp.


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_organism_name: Timonella sp. A28

ncbi_submitter: Pukyong National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;x__Micrococcales incertae sedis;g__Timonella;x__unclassified Timonella;s__Timonella sp. A28


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Ancylobacter sp. VNQ12

ncbi_submitter: Kyonggi university


ncbi_organism_name: Blautia sp.


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Huelva; Cueva de la Mora

ncbi_isolation_source: Deep anoxic layer (35m depth) Cueva de la Mora

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prevotellaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-0015

ncbi_submitter: BILS


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Spain: Asturias

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: FDAARGOS 1435

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Candidatus Stercorousia faecigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: Denmark

ncbi_isolation_source: Department of Zoophysiology; Aarhus University

ncbi_organism_name: Testudinibacter sp. TR-2022

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: pond water/sludge

ncbi_organism_name: Pseudomonas sp. TKO26

ncbi_submitter: University of South Alabama


ncbi_country: Qatar: Doha

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Sidra Medicine


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Indian Ocean

ncbi_isolation_source: Hydrothermal area

ncbi_organism_name: Bacillus sp. SM2101

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SM2101


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Hefei

ncbi_isolation_source: anal swabs

ncbi_submitter: ICDC


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Papua New Guinea: Hoia Bay

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Moorena sp. SIO3F7

ncbi_submitter: UCSD


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Clostridiaceae bacterium UBA2223

ncbi_submitter: University of Queensland


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter sp. TUM15429

ncbi_submitter: Toho University


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center