ncbi_organism_name: Candidatus Onthoplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;x__unclassified Candidatus Onthoplasma;s__Candidatus Onthoplasma sp.


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: China: yunnan

ncbi_genome_representation: full

ncbi_isolation_source: feces of bat

ncbi_organism_name: Ornithinimicrobium faecis

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baylyi

ncbi_submitter: EMG


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Hospital Surface

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Scaffold

ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: smooth surface caries of tooth

ncbi_organism_name: Neisseria sp. KEM232

ncbi_submitter: Gwangju Health University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. BNK-14

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 583

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Intestinimonas butyriciproducens


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacilli bacterium


ncbi_country: Poland: Torun

ncbi_isolation_source: Milk product waste

ncbi_organism_name: Priestia megaterium

ncbi_submitter: BactoTech


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Clostridium diolis

ncbi_submitter: Central Region Agricultural Research Center, NARO


ncbi_country: China: Zhengzhou

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Midichloria mitochondrii

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_assembly_name: freshwater MAG --- Loc090907-6m_bin-095

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Carnobacterium inhibens

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Xanthomonas arboricola pv. fragariae

ncbi_strain_identifiers: CFBP 6773

ncbi_submitter: JLU


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: AAFC


gtdb_type_species_of_genus: t

ncbi_organism_name: Denitratimonas tolerans

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: Food

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Seoul National Univerisity


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Yibin

ncbi_isolation_source: mud pit

ncbi_organism_name: Caproiciproducens sp. CPB-2

ncbi_submitter: Sichuan University of Science & Engineering


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T13125

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Microbacterium algeriense

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fresh water

ncbi_organism_name: Runella rosea

ncbi_submitter: Korea University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA:Cerro Negro; NM

ncbi_isolation_source: subsurface rock

ncbi_organism_name: Shewanella putrefaciens

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China:Hebei; Baoding

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_strain_identifiers: GPS48 HEBBD 2019-4

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: Shark Bay; Heron Island; Great Barrier Reef

ncbi_submitter: University of Queensland

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tethybacterales;f__Candidatus Tethybacteraceae;g__Candidatus Amphirhobacter;s__Candidatus Amphirhobacter heronislandensis


ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia: Queensland dairy property

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Stappia indica

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Kenya: JKUAT Farm; Juja

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China

ncbi_isolation_source: secretions

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolate: AOP28_E1_surf _bin _3

ncbi_organism_name: Corynebacterium flavescens

ncbi_strain_identifiers: AOP28_E1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia

ncbi_isolation_source: Shiraz

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New York

ncbi_organism_name: Blautia faecis


ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus solani


ncbi_country: China: Fujian Province

ncbi_isolation_source: urine

ncbi_submitter: Peking University People's Hospital


ncbi_country: Germany

ncbi_isolation_source: chicken

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_assembly_name: IMG-taxon 2642422558 annotated assembly

ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-602

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;x__environmental samples;s__uncultured Chlorobiales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Nigeria

ncbi_isolation_source: Wound swab

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_country: Canada: QC

ncbi_isolation_source: sinus

ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: China: Zhejiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_assembly_name: Rumen uncultured genome RUG589

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_country: Ecuador

ncbi_isolation_source: pulmonary

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad San Francisco de Quito


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Nitratifractor sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured Ignavibacterium sp.


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 260

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Reyranella sp.


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 388

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Hydrogenophaga sp.


ncbi_organism_name: Kluyvera cryocrescens

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Rhizobium sp. 0TCS1.26

ncbi_submitter: University of Salamanca


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: UIUC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_strain_identifiers: OSS 695

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Rhizobiaceae bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: University of Parma


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_assembly_name: IMG-taxon 2654588151 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Luhuitou Fringing Reef; Sanya; Hainan Province

ncbi_organism_name: Prauserella coralliicola

ncbi_submitter: Bielefeld University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Philippines

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Dehalococcoides mccartyi CBDB1

ncbi_submitter: Max Planck Institute


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: IA

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Turicimonas muris


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Italy

ncbi_isolation_source: sugar

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: CIRM-BIA 2155

ncbi_submitter: Brigham Young University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2004090

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Jessup; MD

ncbi_isolation_source: fresh-cut produce processing plant

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: Environmental microbiology and food safety lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_assembly_name: IMG-taxon 2623620487 annotated assembly

ncbi_organism_name: Prevotellaceae bacterium KH2P17

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: bulla swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: marine

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_level: Chromosome

ncbi_country: Russia

ncbi_isolation_source: Cyanobacterial mat of hot spring; Russia; Kamchatka; Uzon caldera

ncbi_organism_name: Thermanaerovibrio velox DSM 12556

ncbi_submitter: JGI


ncbi_country: Italy: Friuli Venezia Giulia

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus thermophilus TH1435

ncbi_submitter: University of Padua


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland: Warszawa

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: National Medicines Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Calgary


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ensifer sp. 22460

ncbi_submitter: Yantai University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_assembly_name: freshwater MAG --- Loc081215-6m_bin-0450

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0407

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Thermophilibacter gallinarum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Division of Biomedical Food Research, National Institute of Health Sciences, NIHS


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: India: Sirpur Kagaznagar

ncbi_isolation_source: cellulosic waste soil

ncbi_organism_name: Paracoccus mutanolyticus

ncbi_submitter: Bioserve Biotechnologies


ncbi_organism_name: Arthrobacter sp. K5

ncbi_submitter: Anhui Agricultural University


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Central Texas Vetrans Healthcare system


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin5

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MOJ bin5

ncbi_submitter: Monash University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: The third people hospital of Shenzhen


ncbi_country: India: Anand

ncbi_isolation_source: pooled caecum metagenomic DNA from five Cobb400 and five Kadaknath chicken reared together under same contditions

ncbi_submitter: Anand Agricultural University


ncbi_submitter: EBI


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Nocardia niwae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces litmocidini

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics


ncbi_submitter: Hangzhou Xixi Hospital Affiliated to Zhejiang Chinese Medical University


ncbi_country: Switzerland

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Fusobacterium sp. DD6

ncbi_submitter: University of Calgary


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP021017.11

ncbi_submitter: IGS


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. SS4

ncbi_submitter: University Hospital Dresden


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: willow soil

ncbi_organism_name: Rhodococcus sp. WS3

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. WS3


ncbi_country: Australia: Brisbane

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Antarctica

ncbi_isolation_source: stone fragment in a fissure in Komarek Wall; James Ross Island

ncbi_organism_name: Flavobacterium psychroterrae

ncbi_submitter: Masaryk University


ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Center for Disease Control and Prevention of PLA


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Spain

ncbi_isolation_source: laying hens

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- F14_bin-0944

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Fargo

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: freshwater MAG --- MJ-2014-D7_bin-001

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Iowa


ncbi_assembly_name: Rumen uncultured genome RUG14072

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: ascitic fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Homo sapiens

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: department of clinical science, university of bergen


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Flagellimonas aequoris

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_organism_name: Pseudoalteromonas sp. S981

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paracidovorax avenae

ncbi_submitter: Michigan State University


ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5383


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: christian Medical College


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_isolation_source: ceca contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Arkansas


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: roots

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_assembly_name: Salmonella enterica CVM N43824 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_submitter: University of Helsinki


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom: Staffordshire

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: NIAB East Malling Research


ncbi_country: Kenya: Nyanza Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Guangdong Province

ncbi_isolation_source: forest soil

ncbi_organism_name: Trinickia dinghuensis

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Fimenecus excrementavium

ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;s__Candidatus Fimenecus excrementavium


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas tolaasii

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Kocuria rosea

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Jutongia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Altaica


ncbi_country: USA: Wildcat Cove Preserve; FL

ncbi_isolation_source: Gill tissue

ncbi_organism_name: Spirochaeta sp. LUC14_002_19_P3

ncbi_submitter: Clemson University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Hellea sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Iran

ncbi_organism_name: Curtobacterium aurantiacum

ncbi_strain_identifiers: CFBP 8819

ncbi_submitter: University of Tehran


ncbi_country: France

ncbi_isolation_source: bovine mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Animal - Chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20093430


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Enterococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: New Jersy

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Micromonospora sp. NPDC049102

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Levilactobacillus lanxiensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Massilia sp. GER05

ncbi_submitter: Microbial imprinting for crop resilience (MiCRop)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Alexandria University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces lavendulae


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolate: SPRUCE 669

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 669

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: bacterium c-19

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Canada: Hemmingford; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter bereziniae


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Pusillimonas sp. (ex Stolz et al. 2005)

ncbi_submitter: Fudan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Alcaligenaceae;g__Pusillimonas;x__unclassified Pusillimonas;s__Pusillimonas sp. (ex Stolz et al. 2005)


ncbi_organism_name: Aestuariibius insulae

ncbi_strain_identifiers: RE

ncbi_submitter: KIOST


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia nevei

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: gabuh0707 v01

ncbi_organism_name: Acinetobacter baumannii UH0707

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Opitutus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient A

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Queensland


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_assembly_name: freshwater MAG --- Loc090907-4m_bin-034

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: Rumen uncultured genome RUG10325

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Normandy

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rice paddy soil

ncbi_organism_name: Heliobacterium mobile

ncbi_submitter: Bellevue University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Singapore

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori UM299

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Manitoba

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: SAHMRI


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Lysinibacillus sp. NPDC093692

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_assembly_name: IMG-taxon 2651870119 annotated assembly

ncbi_organism_name: Paraburkholderia caballeronis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: sputum

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Acidaminococcus timonensis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Helcobacillus massiliensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Nocardioides sp. CCNWLW216

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Hama Hama

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Vibrio tarriae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 12 - depth 25m

ncbi_organism_name: Synechococcus sp. REDSEA-S02_B4

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm periphyton collected on a rock

ncbi_organism_name: Leptospira bandrabouensis

ncbi_submitter: Federal University of Bahia


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Rhodococcus koreensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: USA: MD

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: jejunum

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Cytobacillus praedii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Acidovorax sp.


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Streptomyces sp. NPDC058231


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Maharshi Dayanand University Rohtak Haryana India


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Parabacteroides johnsonii


ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella sp. NW1197

ncbi_submitter: Sichuan University


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Bacillus weihaiensis

ncbi_submitter: James Cook University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-2350

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_isolate: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Germany: Munich

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Chengdu Military General Hospital


ncbi_assembly_name: R-75601 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Croceicoccus pelagius

ncbi_submitter: Tang lab


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: ETH Zurich


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enhydrobacter sp. UBA7602

ncbi_submitter: University of Queensland


ncbi_organism_name: Legionella brunensis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Clemson University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut


ncbi_assembly_name: freshwater MAG --- Loclat_bin-00149

ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Netherlands

ncbi_isolation_source: clinical

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Italy

ncbi_isolation_source: swine frankfurter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: nares

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Armenia: Shirak Province

ncbi_organism_name: Yersinia pestis 1522

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 1522


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: United Kingdom

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: milk

ncbi_submitter: University of Leicester


ncbi_country: USA: Michigan

ncbi_organism_name: Arthrobacter sp. PvP102

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Vedanta Biosciences, Inc.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Rwanda: Kicukiro

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Rhodothalassium salexigens DSM 2132


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Bacillus mycoides DSM 2048

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus mycoides;x__Bacillus mycoides DSM 2048


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: Chicago

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium E155

ncbi_submitter: Department of Medical Microbiology, University Medical Center Utrecht


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: Rumen uncultured genome RUG629

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: BGI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: University of Queensland


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Superficial Swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limadaptatus;s__Candidatus Limadaptatus stercorigallinarum


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Salmonella sp. ZJHZ20_0052

ncbi_submitter: Zhejiang university


ncbi_country: India

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_organism_name: Variovorax sp. DT-64

ncbi_submitter: IMEDEA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Alcaligenes aquatilis

ncbi_submitter: University of Calgary


ncbi_country: USA: Massachusetts

ncbi_isolation_source: cloacal & blood material from turtle

ncbi_organism_name: Candidatus Enterococcus murrayae

ncbi_submitter: Broad Institute


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Third Institute of Oceanography


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Balneolaceae bacterium


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Radboud University

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: California; Los Angeles

ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_strain_identifiers: Los Angeles 1 (D-7696)

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0192R


ncbi_organism_name: Streptomyces griseoviridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Cincinnati Childrens Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Veillonella parvula

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Yantai University


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium hungaricum

ncbi_submitter: Seqomics Ltd.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Limosilactobacillus alvi

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: uncultured Dehalogenimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Institute of Health


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Sciences of Gafsa


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces sp. NPDC005263

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: filter from recirculating aquaculture system

ncbi_organism_name: Phycisphaerae bacterium RAS1

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__unclassified Phycisphaerae;s__Phycisphaerae bacterium RAS1


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P10P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4230

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4230


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bournemouth University


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 5SM3

ncbi_submitter: Cornell University


ncbi_organism_name: Bacillus sp. FSL R5-0293

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0293


ncbi_country: China: Bohai Gulf

ncbi_isolation_source: marine sediment

ncbi_organism_name: Oceanospirillum sediminis

ncbi_submitter: Binzhou Medical University


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: NJ

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0109

ncbi_submitter: Broad Institute


ncbi_isolation_source: venous blood

ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: OCU Ac17

ncbi_submitter: Department of Bacteriology, Graduate School of Medicine, Osaka City University


ncbi_isolation_source: Bodily fluid


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Denmark: Zealand

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: New York; NY

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_isolation_source: inflamed gingiva

ncbi_organism_name: Fusobacterium polymorphum


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Yonsei University


ncbi_organism_name: Streptomyces sp. NPDC048213

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Chittagong


ncbi_country: France

ncbi_isolation_source: yoghurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 36

ncbi_submitter: Brigham Young University


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Campylobacter upsaliensis

ncbi_strain_identifiers: Campylobacter upsaliensis 17-M197059

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: dust from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_isolation_source: not known


ncbi_organism_name: Cedecea davisae


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Germany

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: caecum

ncbi_organism_name: Blautia sp. An46

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Enterobacter cloacae complex sp. 319F7

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 319F7


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium RIFOXYB1_FULL_47_13


ncbi_isolation_source: Dust

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky;x__Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 770

ncbi_organism_name: Coprobacillus sp.

ncbi_strain_identifiers: CIM:MAG 770

ncbi_submitter: Mayo Clinic


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: EFM 17

ncbi_submitter: Yonsei Medical Center


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_strain_identifiers: XUMN

ncbi_submitter: University of Minnesota


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Fusobacteriaceae bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paracoccus nototheniae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Altererythrobacter sp. GH1-8

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudanabaenaceae cyanobacterium


ncbi_organism_name: Bacillus cereus group sp. BC17

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC17


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Harbin Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella bongori;x__Salmonella bongori serovar 48:z41:--;x__Salmonella bongori serovar 48:z41:-- str. RKS3044


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: United Kingdom:Taunton

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: New York; University of Rochester

ncbi_isolation_source: laboratory

ncbi_submitter: University of Rochester School of Medicine & Dentistry


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Smaragdicoccus;s__Smaragdicoccus niigatensis;x__Smaragdicoccus niigatensis DSM 44881 = NBRC 103563


ncbi_assembly_name: Draft genome of Kocuria palustris, strain W4

ncbi_isolation_source: wall segment in a danish slaughterhouse

ncbi_organism_name: Pseudoclavibacter helvolus

ncbi_submitter: Universitetsparken 15


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Arthrobacter sp.


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Paenibacillus sp. MYb63

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Hailuo Glacier virgin forest; Sichuan basin

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_isolation_source: feces of bat

ncbi_organism_name: Bartonella sp. HY406

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Russia: Siberia

ncbi_isolation_source: microbial mat of Garga thermal spring

ncbi_organism_name: Heliomicrobium undosum

ncbi_submitter: Bellevue University


ncbi_country: China: Ningbo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: ES-DO

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolate: STB-E

ncbi_organism_name: Mycobacterium canettii CIPT 140070002

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070002


ncbi_isolate: BHCQB

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacterium sp. 14-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 14-2


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan:Hokkaido; Okoppe

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis californica

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_assembly_name: Rumen uncultured genome RUG13200

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany

ncbi_isolation_source: poultry meat

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Bacillus cereus group sp. BCN108

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN108


ncbi_country: USA: DC

ncbi_isolation_source: Throat

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Kordia sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Illinois

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolation_source: secretion

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human skin

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: NIH/NHGRI


ncbi_assembly_name: IMG-taxon 2521172671 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC127132

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Nanjing university


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India

ncbi_isolation_source: Diarrhea

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: South Africa: Tau Tona mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc090907-8m_bin-868

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_submitter: University of Oxford


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens;x__Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Sphingomonadales bacterium UBA6174

ncbi_submitter: University of Queensland