ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: DOE JGI


gtdb_representative: f

ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_assembly_level: Scaffold

ncbi_country: China: Guangxi

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 53415

ncbi_strain_identifiers: CCBAU 53415

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Kazan Federal University


gtdb_type_species_of_genus: t

ncbi_organism_name: Compostibacter hankyongensis

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Guangdong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_isolation_source: anodic biofilm of glucose-fed microbial fuel cell originally inoculated with sewage sludge

ncbi_organism_name: Klebsiella electrica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Tharpella sp.

ncbi_submitter: California Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Tharpellota;c__Candidatus Tharpellia;o__Candidatus Tharpellales;f__Candidatus Tharpellaceae;g__Candidatus Tharpella;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Tharpellota;c__Candidatus Tharpellia;o__Candidatus Tharpellales;f__Candidatus Tharpellaceae;g__Candidatus Tharpella;x__unclassified Candidatus Tharpella;s__Candidatus Tharpella sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG_4_10_14_0_8_um_filter_42_14


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: India: Little Rann of Kutch

ncbi_isolation_source: saline desert soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Gujarat University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: Faeces


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Liaoning province

ncbi_isolation_source: Puncture fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: USA: Berkeley; California

ncbi_isolation_source: left pinna

ncbi_organism_name: Microbacterium sp. BDGP8

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: China: Nan Jing

ncbi_isolation_source: Blood culture medium

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Aeromonas media

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: EPFL


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_country: South Korea: Seoul

ncbi_submitter: Yonsei University College of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: International Space Station

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Arcicella sp.


ncbi_organism_name: Kitasatospora sp. MAP12-22

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Microgenomates;s__Candidatus Microgenomates bacterium CPR3


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: France: Arcueil

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Rennes


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Kutzneria chonburiensis

ncbi_strain_identifiers: TBRC 1432

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptomyces sp. NPDC058576

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: University of Oxford


ncbi_organism_name: Candidatus Peribacterales bacterium

ncbi_submitter: EPFL

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__unclassified Candidatus Peribacterales;s__Candidatus Peribacterales bacterium


ncbi_assembly_name: freshwater MAG --- AM-sed-core1-D0_bin-413

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Paenibacillus septentrionalis

ncbi_strain_identifiers: PCU 280


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: shallow sea hydrothermal fluids

ncbi_organism_name: Thiomicrospira sp.

ncbi_submitter: Ministry of Natural Resources, Third Institute of Oceanography


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Kentucky

ncbi_submitter: State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Edwardsiella;s__Edwardsiella tarda;x__Edwardsiella tarda ATCC 15947 = NBRC 105688


ncbi_organism_name: Streptomyces sp. XHT-2

ncbi_submitter: Huaibei Normal University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: flocculating fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: China: Huizhou

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: Armenia

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Treponema sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus cristatus

ncbi_strain_identifiers: ACRRN

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Fidelibacterota bacterium UBA1134

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA1134


ncbi_assembly_name: Rumen uncultured genome RUG13863

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Shewanella frigidimarina


ncbi_organism_name: Salinibacter sp.

ncbi_submitter: Montana State University


ncbi_country: USA: California; Eel River; Mainstem Eel River near Holmes Flat

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Abiotrophia sp.


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: Ulcerative colitis patient gut tissue biopsy

ncbi_submitter: University of Toronto


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA5092


ncbi_country: China: Henan

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leiden University Medical Center


ncbi_assembly_name: Rumen uncultured genome RUG13262


ncbi_isolation_source: not provided

ncbi_organism_name: Clostridium sp. CAG:793

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. M312

ncbi_submitter: Zhejiang University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Harvard University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ICE 668

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Bacillus safensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Chromosome

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean

ncbi_isolation_source: rock

ncbi_organism_name: Chitinophagaceae bacterium UBA3961


ncbi_assembly_name: freshwater MAG --- Ja1_bin-1678

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_organism_name: Bacillus sp. EU52

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EU52


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: CXN

ncbi_submitter: Enze Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B10D7B


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Blood culture

ncbi_organism_name: Actinotalea sp. Marseille-Q4924

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_organism_name: Caldisericum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_assembly_name: Rumen uncultured genome RUG12097

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Brucella suis 06-988-1656

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bombilactobacillus mellis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: BGI


ncbi_country: United Kingdom:Scotland

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Tibet

ncbi_isolation_source: hotspring

ncbi_organism_name: Azohydromonas sediminis

ncbi_strain_identifiers: SYSU G00088

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: Italy: Turi

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Alberta


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Dokdonia sp. Hel_I_53

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: USA: PA

ncbi_isolation_source: brain

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: marine metagenome


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled cattle faecal samples collected from floor of farm

ncbi_organism_name: Citrobacter sp. RHB35-C17

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Fujian Provincial Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Wandsworth


ncbi_organism_name: uncultured Kangiellaceae bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Vibrio wakamikoensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Aliihoeflea sp.


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangzhou

ncbi_strain_identifiers: ST11 CRKP21

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_genome_category: derived from single cell

ncbi_organism_name: beta proteobacterium JGI 0001001-A11

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__unclassified Betaproteobacteria;s__beta proteobacterium JGI 0001001-A11


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Sediment

ncbi_organism_name: Thermus altitudinis

ncbi_strain_identifiers: SYSU G00630

ncbi_submitter: School of Life Science


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG11618

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1212

ncbi_submitter: Broad Institute


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. App4-10

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Hippea sp. KM1


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Shewanella baltica

ncbi_submitter: University of Canterbury


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Australia: NSW

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Hatay Mustafa Kemal University Faculty of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Quebec

ncbi_isolation_source: Newborn 2-009 diaper feces at 14 days after birth

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Institut national de la recherche scientifique


ncbi_country: Japan:Tokyo; Adachi-ku

ncbi_isolation_source: farm soil

ncbi_organism_name: Effusibacillus dendaii

ncbi_submitter: The University of Tokyo, Collaborative Research Institute for Innovative Microbiology Biotechnology Research Center Microbial Membrane Transport Engineering(Endowed Research Unit)


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Nanopelagicus abundans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus abundans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus abundans


ncbi_organism_name: Prescottella sp. D32

ncbi_submitter: Institute of Microbiology,Guangdong Academy of Sciences


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Treponema pallidum subsp. pallidum SS14

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema pallidum;sb__Treponema pallidum subsp. pallidum;x__Treponema pallidum subsp. pallidum SS14


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_submitter: Broad Institute


ncbi_isolate: metabat2_XCR1_HET_6758_bwa.7 MAG

ncbi_strain_identifiers: metabat2_XCR1_HET_6758_bwa.7 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_submitter: Erciyes Universitesi Veteriner Fakultesi


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Erwinia sp. HDF1-3R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Pseudoalteromonas sp. S2893

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_isolation_source: clinical material

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CRC RESIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Tumbes

ncbi_isolation_source: Hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Programa Nacional de Innovación en Pesca y Acuicultura


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Butyrivibrio sp. XPD2002

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Rennes

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_country: India

ncbi_submitter: Washington State University


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: AAFC


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_strain_identifiers: AATZE

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Mycobacterium tuberculosis KT-0070

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Monapad Beach

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: JNTUH


ncbi_country: Bangladesh

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: France

ncbi_organism_name: Afipia massiliensis


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: USA: Sacramento CA

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University Hospital Tuebingen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_submitter: EMG


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Enterococcaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Bacillus cereus group sp. BceL042

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL042


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas media

ncbi_submitter: Agroscope


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Halothiobacillus sp.


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Pulmuone Institute of Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Nocardiopsis dassonvillei


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: California; San Diego Bay

ncbi_organism_name: Pseudoalteromonas luteoviolacea

ncbi_submitter: San Diego State University


ncbi_isolation_source: soil

ncbi_organism_name: Listeria grandensis

ncbi_submitter: Cornell University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Kazakhstan: West Kazakhstan region

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: bioreactor

ncbi_organism_name: Cloacimonetes bacterium UBA5817

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium UBA5817


ncbi_country: China: Hebei

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Institute of Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0844

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides sp. CAG:530

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: MI

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG14447

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Anhui; Maanshan

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: Rumen uncultured genome RUG11784

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. enterocolitica;x__Yersinia enterocolitica subsp. enterocolitica NBRC 105693


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: Infant 2 DOL 22 gut

ncbi_organism_name: Clostridium perfringens


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Marinilabiliaceae bacterium


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Flagellimonas olearia

ncbi_submitter: Ocean University of China


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: choana

ncbi_organism_name: Corynebacterium gerontici

ncbi_submitter: Bielefeld University


ncbi_organism_name: Collinsella sp. TM05-38


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Pseudokineococcus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA1120

ncbi_submitter: University of Queensland


ncbi_assembly_name: IMG-taxon 2690315657 annotated assembly

ncbi_organism_name: Rhodanobacter sp. OK091

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: IMG-taxon 2657245717 annotated assembly

ncbi_organism_name: Streptomyces sp. BvitLS-983


ncbi_country: Germany: Vilsendorf; Bielefeld

ncbi_isolation_source: soil from a small paddock

ncbi_organism_name: Corynebacterium comes

ncbi_submitter: Uni Bielefeld


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_organism_name: Streptosporangium sandarakinum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: stool sample from 52 year old healthy male

ncbi_organism_name: Eubacterium sp. UNK.MGS-25

ncbi_submitter: The Mayo Clinic

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. UNK.MGS-25


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_isolation_source: brain pigeon

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain

ncbi_organism_name: Vibrio parahaemolyticus S029

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S029


ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Neomegalonema sp.

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Niabella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycolicibacterium anyangense

ncbi_submitter: University of Fribourg


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes onderdonkii


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Streptomyces caelestis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Raoultella planticola

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: [Eubacterium] siraeum CAG:80

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;s__[Eubacterium] siraeum;x__[Eubacterium] siraeum CAG:80


ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Rhizomicrobium electricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Parolsenella catena

ncbi_submitter: National Institute of Genetics


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio paracholerae 877-163

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_organism_name: Bordetella pertussis


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: China: Zhejiang

ncbi_isolation_source: Urine culture

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermoanaerobacterium sp. DL9XJH110

ncbi_submitter: Shanghai JiaoTong University


ncbi_organism_name: Xanthomonas arboricola pv. fragariae

ncbi_strain_identifiers: CFBP 6762

ncbi_submitter: JLU


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0303R

ncbi_submitter: Broad Institute


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Rhodococcus sp. NM-2

ncbi_submitter: Inner Mongolia University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NM-2


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Lake Zernsee; Potsdam

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Armatimonadetes bacterium Uphvl-Ar1

ncbi_submitter: Universitaet Potsdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium Uphvl-Ar1


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Segatella copri


ncbi_organism_name: Marinobacter sp. VGCF2001

ncbi_submitter: Shandong University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: EPFL


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Panama

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira santarosai;x__Leptospira santarosai serovar Shermani;x__Leptospira santarosai serovar Shermani str. 1342KT


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-13

ncbi_submitter: JCVI


ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: INRA GRIGNON


ncbi_organism_name: Oxalobacter paraformigenes

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Opitutaceae bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Streptococcus pyogenes GA41208


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Pseudoxanthobacter soli DSM 19599

ncbi_submitter: Biology Centre CAS


ncbi_country: USA: California; Middletown

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Staphylococcus aureus W89581

ncbi_submitter: Broad Institute


ncbi_isolation_source: meat

ncbi_organism_name: Pseudomonas bubulae

ncbi_strain_identifiers: Pseudomonas parafragi

ncbi_submitter: CEBITEC


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_isolation_source: seawater from junction between the ocean and freshwater

ncbi_organism_name: Confluentibacter lentus

ncbi_submitter: Shandong Uniwersity at Weihai


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Hoylesella marshii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Candidatus Faeciplasma pullistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Faeciplasma;s__Candidatus Faeciplasma pullistercoris


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides sp. LB1

ncbi_submitter: Labor Berlin - Charite Vivantes GmbH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Streptococcus suis


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: Italy: Lecco

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: Russia: Siberia

ncbi_isolation_source: permafrost

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Olsenella sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy

ncbi_isolation_source: bovine cheese blue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Helsinki University


ncbi_country: USA: Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: JCVI


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: christian Medical College


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: United Kingdom: Scotland; Western General Hospital; Edinburgh

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter zhangbolii

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Piscinibacter gummiphilus

ncbi_submitter: Nagaoka University of Technology


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Canada

ncbi_isolation_source: human waste from septic tank

ncbi_organism_name: Aliarcobacter faecis

ncbi_submitter: Ghent University


ncbi_country: Thailand

ncbi_isolation_source: pickled weed

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Mahidol University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Israel

ncbi_isolation_source: sandy soil irrigated with treated wastewater

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Agricultural Research Organization - the Volcani Center


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus sp. 125944

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France:French Brittany

ncbi_isolation_source: patient clinical isolate

ncbi_submitter: Houston Methodist Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Diseased olive flounder

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Pukyong National University


ncbi_organism_name: Micromonospora arida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Portugal

ncbi_isolation_source: Healthy human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Stony Brook University


ncbi_isolation_source: drain tip

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_organism_name: Halomonas sp. 141

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Zhangzhou city; Fujian province

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Agromyces kandeliae

ncbi_submitter: Huzhou University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Weihai

ncbi_isolation_source: intestines

ncbi_organism_name: Oceaniglobus ichthyenteri

ncbi_submitter: Shandong University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_submitter: South China Normal University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium sp. GB-3

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Barrow AK

ncbi_isolation_source: Alaska USA

ncbi_organism_name: Mycoplasma sp. OR1901

ncbi_submitter: University of Florida


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacillus cereus group sp. BceL005

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL005


ncbi_country: Japan: Gifu

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Brazil: Braganca

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Washington


ncbi_assembly_name: Rumen uncultured genome RUG12329

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Luteolibacter algae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_isolate: AOP43_C2_surf _bin _5

ncbi_organism_name: Corynebacterium flavescens

ncbi_strain_identifiers: AOP43_C2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: Aged cheddar cheese

ncbi_organism_name: Paucilactobacillus wasatchensis

ncbi_submitter: Utah State University


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Colidextribacter sp. OB.20

ncbi_submitter: Chinese Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Colidextribacter;x__unclassified Colidextribacter;s__Colidextribacter sp. OB.20


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_isolation_source: clinical

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ130605B_bin-479

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Tunisia: Mateur

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Phil the wombat

ncbi_organism_name: Ruminococcus sp. Phil15

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Paenibacillus sp. PastH-2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cellulomonas sp. NPDC089187

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Bacteroidia bacterium


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-75

ncbi_submitter: JCVI


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 145

ncbi_submitter: Oregon State University


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Austria: Vienna

ncbi_organism_name: Luteolibacter ambystomatis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin008

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin008


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus sp. E5-209

ncbi_submitter: Institute of Marine Research


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0020

ncbi_submitter: Broad Institute


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_submitter: China Medical University


ncbi_country: Italy

ncbi_organism_name: Campylobacter geochelonis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Italy: Piedmont

ncbi_isolation_source: muscle tissue from wild boar carcass

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planctomyces sp.


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: China: Shandong Province

ncbi_isolation_source: bank soil

ncbi_organism_name: Pedobacter helvus

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Turicimonas muris


ncbi_country: USA: Texas

ncbi_isolation_source: eye

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Canada

ncbi_isolation_source: grain

ncbi_organism_name: Enterobacter sp. E105B

ncbi_submitter: Canadian Grain Commission

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. E105B


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Rhodospirillaceae bacterium UBA4587

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud del Peru


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-7-3

ncbi_submitter: Curtin University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Spain

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: Portugal:  A Pedra ; diving spot in front of the fort  Castelo do Queijo

ncbi_isolation_source: subtidal sample; epilithic (13m depth); about 200 m off the shore

ncbi_organism_name: Zarconia navalis LEGE 11467

ncbi_submitter: CIIMAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;x__Oscillatoriophycideae;o__Oscillatoriales;x__Oscillatoriales incertae sedis;g__Zarconia;s__Zarconia navalis;x__Zarconia navalis LEGE 11467


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Xiamen University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_country: China

ncbi_organism_name: Falsirhodobacter xinxiangensis

ncbi_submitter: Hubei University


ncbi_organism_name: Pedococcus sp. KACC 23699

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Cyanobacteria bacterium J06621_3

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06621_3


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Halanaerobium saccharolyticum

ncbi_submitter: China University of Geosciences


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Psychrobacter celer


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: UCSI University


ncbi_organism_name: Streptomyces sp. NPDC088925

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Tsuneonella sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Pseudomonas sp. Pseusp88

ncbi_submitter: North Carolina State University


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Firmicutes bacterium UBA3915

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3915


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__candidate division TM6 bacterium GW2011_GWF2_28_16


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Osaka Institute of Public Health


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_organism_name: Microcoleus sp. A6-C6

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: New York; University of Rochester

ncbi_isolation_source: laboratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rochester School of Medicine & Dentistry


ncbi_country: Canada: Richmond Hill

ncbi_isolation_source: Recreational Freshwater Kettle Lake

ncbi_organism_name: Exiguobacterium sp. N5

ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. N5


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: South Africa: Tshwane

ncbi_isolation_source: Potatoes

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: University of South Africa


ncbi_submitter: Xi'an Jiaotong University


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. coriandri

ncbi_strain_identifiers: CFBP 8452

ncbi_submitter: The Pennsylvania State University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3619

ncbi_submitter: University of Queensland


ncbi_organism_name: Coprothermobacter proteolyticus

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guishan Island

ncbi_isolation_source: sea water

ncbi_organism_name: Paracoccus albicereus

ncbi_submitter: Xiamen University


ncbi_organism_name: Lacrimispora sp.


ncbi_country: USA: Texas

ncbi_submitter: Rice University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Forest soil

ncbi_organism_name: Micromonospora lutea

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: MA; Boston

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Bergen


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: Bioaster


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Citromicrobium sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Chlamydia trachomatis 70s

ncbi_submitter: Oregon State University


ncbi_country: China: Zhejiang

ncbi_isolation_source: soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Beijing


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: IMG-taxon 2623620569 annotated assembly

ncbi_organism_name: Micromonospora citrea

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: thermal water

ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Alistipes megaguti

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Aequorivita CIP107455T annotated assembly

ncbi_organism_name: Aequorivita lipolytica

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Japan

ncbi_isolation_source: diseased shrimp

ncbi_organism_name: Vibrio penaeicida

ncbi_submitter: Laboratory of Genome Science, Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_country: China: Ronggui; Shunde; Guangdong

ncbi_isolation_source: waterway sediment

ncbi_organism_name: Ciceribacter ferrooxidans

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: pig manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institute Of Microbiology


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium guaraldiae

ncbi_submitter: Federal University of Bahia


ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_isolation_source: Pus

ncbi_submitter: University of West London


ncbi_isolation_source: infant feces

ncbi_organism_name: [Clostridium] symbiosum


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-332

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-332


ncbi_organism_name: Candidatus Merdenecus merdavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Merdenecus;s__Candidatus Merdenecus merdavium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Taiwan: Tainan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Cheng Kung University


ncbi_country: Turkey

ncbi_isolation_source: water

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: Rumen uncultured genome RUG11040

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Kuwait: Kuwait City; Kuwait Desert

ncbi_isolate: KUW bin17

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KUW bin17

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Oceanicaulis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NBC_01550

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Os S e1

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-526

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Dalhousie University


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: dPANK/fbl mutant fly guts

ncbi_organism_name: Acetobacter persici

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology