ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: SC


ncbi_assembly_level: Contig

ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: University of Wisconsin - Madison


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Fuzhou City; Fujian Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Olleya sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Guizhou province

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_assembly_level: Complete Genome

ncbi_country: Pacific Ocean

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Thioglobus sp. NP1

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp. NP1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pigmentiphaga humi

ncbi_refseq_category: reference genome

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_43_32


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


gtdb_type_species_of_genus: t

ncbi_strain_identifiers: NRRL 8057

ncbi_submitter: CEA/Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptantibioticus;s__Streptantibioticus cattleyicolor;x__Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488

ncbi_type_material_designation: assembly from type material


ncbi_submitter: RWTH Aachen University Hospital


ncbi_strain_identifiers: R765;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: France

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni IOEB_0502

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Sphingomonas aerolata

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northeast Agricultural University


ncbi_country: Viet Nam

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Ohio; western Lake Erie

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Pseudanabaena sp. CoA8_M7

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: Peru: San Camilo; Ica

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. LMTR 3

ncbi_strain_identifiers: LMTR 3

ncbi_submitter: Universidad Nacional Agraria La Molina


ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella pickettii JCP8017B

ncbi_submitter: Washington University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: gut (Ileum)

ncbi_organism_name: Lentilactobacillus sp. Marseille-Q4993

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Germany

ncbi_isolation_source: Wound swab pancreatic pseudocyst

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: IMG-taxon 2687453723 annotated assembly

ncbi_organism_name: Pseudomonas sp. BS3767

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax arabinosiphilus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Leifsonia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Rancho Murieta city on Sacramento county

ncbi_isolation_source: Renal abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Madagascar

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Vermont

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Pseudoalteromonas sp. JB197

ncbi_submitter: Dutton Lab, UCSD


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Pandoraea sputorum

ncbi_submitter: Wuhan Children's Hospital


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Xenococcaceae cyanobacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: University of Glasgow


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_assembly_name: IMG-taxon 2740891889 annotated assembly

ncbi_organism_name: Hoeflea halophila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_submitter: Zhejiang university


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0145

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Tannerella forsythia

ncbi_submitter: EMG


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Synechococcus elongatus IITB7

ncbi_submitter: Indian Institute of Technology Bombay


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS CTRL-10

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SZAS CTRL-10

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Lake Dianchi

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Frischella perrara


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia blacklockiae

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1367

ncbi_organism_name: Desulfonauticus sp.

ncbi_submitter: The Ohio State University


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_submitter: FDA


ncbi_country: Canada: Alberta

ncbi_submitter: University of British Columbia


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient B

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: Italy: Emilia Romagna

ncbi_isolation_source: bleeding sap

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Tibet Autonomous Region; Zhu Village; Banbar County; Qamdo City

ncbi_isolation_source: soil

ncbi_organism_name: Pararhizobium qamdonense

ncbi_submitter: Hunan Agricultural University


ncbi_country: Indian Ocean: polymetallic sulfide region

ncbi_isolation_source: chitin

ncbi_organism_name: Arsukibacterium indicum

ncbi_submitter: Shandong University


ncbi_country: China

ncbi_organism_name: Sphingobacterium mizutaii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: Rumen uncultured genome RUG14215

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_organism_name: Nocardia asiatica NBRC 100129

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia asiatica;x__Nocardia asiatica NBRC 100129


ncbi_country: India: Chattisgarh

ncbi_isolation_source: Hot spring_55deg.

ncbi_organism_name: Thermoleptolyngbya sp. M55_K2018_002

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Oxford


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWF2_39_10

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWF2_39_10


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sulfurimicrobium sp.

ncbi_submitter: University of Calgary


ncbi_submitter: Nanjing Drum Tower Hospital, the Affiliated Hospital of Nanjing University Medical School


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_assembly_name: LM09-00335 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Beijing

ncbi_isolation_source: poultry

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: potato patch

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Flavobacteriales bacterium UBA7505

ncbi_submitter: University of Queensland


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: USA

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Treponema pallidum

ncbi_submitter: URMITE


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: China: Bengbu

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Methylomonas sp. HYX-M1

ncbi_submitter: yantai institute of coastal zone research


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus S123

ncbi_submitter: Geneva University Hospitals, Genomic Research Laboratory.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-38

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomyces sp.

ncbi_strain_identifiers: new MAG-38

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud del Peru


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: North Carolina State University


ncbi_organism_name: Bacillus cereus group sp. MYBK14-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK14-2


ncbi_country: USA: Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD710

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Germany: Greifswald

ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_44


ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Universidad del Desarrollo


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Actinomyces sp. MRS3W

ncbi_submitter: Anand Agricultural University


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0689

ncbi_submitter: Broad Institute


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Canada: ON

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Iowa

ncbi_organism_name: Hornefia porci

ncbi_submitter: USDA-ARS


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Leibniz Institute of Photonic Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Methylomonas sp.

ncbi_submitter: Portland State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Noakhali Science and Technology Uniersity


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University College Cork


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of the Witwatersrand


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Radboud University


ncbi_assembly_name: freshwater MAG --- MJ-2014-D4_bin-546

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;x__unclassified Balneolia;s__Balneolia bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jeonbuk National University


ncbi_assembly_name: Rumen uncultured genome RUG044

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Caulobacter rhizosphaerae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Italy

ncbi_isolation_source: chicken meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Central venous access devices

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: TU Delft


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.Bin139

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.Bin139


ncbi_organism_name: Streptomyces roseoverticillatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: MD

ncbi_isolation_source: Paprika

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: China: Harbin

ncbi_isolation_source: soil

ncbi_organism_name: Isoptericola luteus

ncbi_submitter: School of life science


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Raoultibacter timonensis

ncbi_submitter: EMG


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_organism_name: Escherichia coli


ncbi_country: China:Hubei; Wuhan; Yangxin County

ncbi_isolation_source: silt samples of arsenic-contaminated area

ncbi_organism_name: Citrobacter sp. XY323

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus sp. MIT 0602

ncbi_submitter: MIT


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Acinetobacter avistercoris

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Sellimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudorhodobacter antarcticus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: marine sediment

ncbi_organism_name: Flagellimonas marinaquae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Copromorpha sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;x__unclassified Candidatus Copromorpha;s__Candidatus Copromorpha sp.


ncbi_country: USA: California; Bodega Bay

ncbi_isolation_source: root

ncbi_organism_name: Desulfovibrio sp. UCD-KL4C

ncbi_submitter: UC Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Roskilde

ncbi_isolation_source: Rain

ncbi_organism_name: Pseudomonas sp. R9.37

ncbi_submitter: Aarhus University


ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Ares Genetics


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: Pinhead Larry

ncbi_submitter: National Chung Cheng University


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: Thailand: Chiang Mai

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chiang Mai University


ncbi_country: Brazil:Santa Catarina; Sao Jose

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Bradyrhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_organism_name: Vagococcus zengguangii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ocular cornea

ncbi_organism_name: Staphylococcus sp. HMSC055A09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Acidimicrobium ferrooxidans DSM 10331

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Belgium

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Belarus: Brest

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Chile: San Felipe; Valparaiso

ncbi_isolation_source: nasal from older adult

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Valparaiso


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: PA

ncbi_isolation_source: lung (Sus scrofa scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Phycisphaerales bacterium UBA2396


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D6_bin-035

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: Kochi University


ncbi_country: Spain

ncbi_isolation_source: soil

ncbi_strain_identifiers: BGSC 4BM1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar navarrensis


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP35_01H_surf _bin _1

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP35_01H_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Bacillus cereus group sp. BceL218

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL218


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_genome_category: derived from single cell

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA7372

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA7372


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Sporosarcina sp. FSL K6-2383

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;x__unclassified Sporosarcina;s__Sporosarcina sp. FSL K6-2383


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Serbia

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: Canada: British Columbia;Vancouver

ncbi_isolation_source: Unknown Specimen Type

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_strain_identifiers: WHRI 5641

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (64um filter)

ncbi_organism_name: Aliivibrio fischeri ZF-211

ncbi_submitter: MIT


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ120531A_bin-375

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Lactobacillales bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: week R4 calf 71 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 78-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yonsei University College of medicine


ncbi_organism_name: Streptomyces sp. NBC_01005

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Corynebacterium cystitidis


ncbi_organism_name: Saccharothrix sp. HUAS TT10

ncbi_strain_identifiers: HUAS TT10

ncbi_submitter: Hunan University of Arts and Science


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: intestine

ncbi_organism_name: Shewanella benthica

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Phocaeicola sartorii


ncbi_isolate: Lactobacillus helveticus

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: Lactobacillus helveticus

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Mycolicibacterium poriferae

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Finland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_country: USA: Richmond

ncbi_isolation_source: lower leg ulcer

ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: CDPH


ncbi_country: Belgium

ncbi_isolation_source: broiler feces from chicken farm collected between 1998-2001

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni LMG 23223


ncbi_assembly_name: Rumen uncultured genome RUG11379

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leucobacter sp. MMO-71

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Clostridioides difficile T6

ncbi_submitter: LPBA


ncbi_organism_name: Kitasatospora sp. NPDC048722

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_country: Kenya: Busia County

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Plant physiology


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Leicester


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-185

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: sewage

ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: Wenzhou Medical University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_assembly_name: freshwater MAG --- VK3_bin-1464

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Enorma sp.

ncbi_submitter: EMG


ncbi_isolation_source: Soft cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Janthinobacterium sp. HLX7-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 234


ncbi_country: Russia: Karachay-Cherkessia

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Research Institute


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: MA; Boston

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Broad Institute


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Geopsychrobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Ketobacter sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Passaging

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Salmonella sp. SKLX063344

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA2132

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2132


ncbi_organism_name: Streptomyces sp. NPDC086549


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: University of Cadiz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Duganella caerulea

ncbi_submitter: Rhizosphere Ecology Team


ncbi_organism_name: Staphylococcus epidermidis VCU109

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Oceanospirillales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium BACL1 MAG-121001-bin56


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1266220

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Imperial College London


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter sp. zg-Y20

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_organism_name: Priestia megaterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: USA: CT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Brucella abortus

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Churince hydrological system; Cuatro Cienegas; Coahuila

ncbi_isolation_source: water from the Churince hydrological system

ncbi_organism_name: Microbacterium sp. CH1

ncbi_submitter: CINVESTAV-Langebio


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Capnocytophaga gingivalis


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0928

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Austria: Vienna

ncbi_isolation_source: rectal

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: India: Trans-Himalayan region

ncbi_isolation_source: Lotus pond; a sulfur-borax hot spring

ncbi_organism_name: Paracoccus sp. SMMA_5_TC

ncbi_submitter: Bose Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. SMMA_5_TC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bartonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_assembly_name: IMG-taxon 2593339212 annotated assembly

ncbi_organism_name: Streptococcus henryi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Acinetobacter venetianus


ncbi_country: China

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: dried roasted pistachio

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_country: USA

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium OF40-10pH9A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Serbia: Futog

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Detroit

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Rubrivirga sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-229

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_strain_identifiers: new MAG-229

ncbi_submitter: Micoorganism


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Klebsiella pneumoniae JH1

ncbi_submitter: GlaxoSmithKline


ncbi_country: Bulgaria

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-738

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alicyclobacillus tolerans

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0320

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF15-14LB

ncbi_submitter: BGI


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: India: Kerala

ncbi_isolation_source: water

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: University of Alberta


ncbi_submitter: University of Colorado Boulder

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__cyanobacterium endosymbiont of Rhopalodia musculus


ncbi_country: USA: DE

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: AAFC


ncbi_country: Pacific Ocean

ncbi_isolation_source: Open Ocean

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: USA: Los Angeles County; California

ncbi_isolation_source: unavailable

ncbi_organism_name: Acinetobacter baumannii LAC-4

ncbi_submitter: California State University, Los Angeles


ncbi_organism_name: Pseudoalteromonas arctica

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Candidatus Fukatsuia;x__unclassified Candidatus Fukatsuia;s__Candidatus Fukatsuia endosymbiont of Drepanosiphum platanoidis


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ralstonia holmesii

ncbi_submitter: LM-UGent


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: metabat2_6737_HOM_CTRL_metaflye.277 MAG

ncbi_organism_name: Bacillota bacterium

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_metaflye.277 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Seoul National University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangdong Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Serratia sp. CY65473

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY65473


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: University of Balearic Islands


ncbi_organism_name: [Clostridium] leptum


ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC088785

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Actinomyces culturomici

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China

ncbi_isolation_source: glacier ice

ncbi_organism_name: Arthrobacter frigidicola

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Shewanella mytili

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 63

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sea water

ncbi_organism_name: Myroides pelagicus

ncbi_submitter: Beijing Institute of Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R447;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy

ncbi_isolation_source: bovine cheese blue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Roseobacter sp. MED193

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: Taiwan: Taichung City; Caohu River

ncbi_isolation_source: river water

ncbi_organism_name: Mucilaginibacter roseus

ncbi_submitter: Lycoming College


ncbi_country: Brazil

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: University of Cambridge


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: compost

ncbi_organism_name: Gordonia sihwensis

ncbi_strain_identifiers: MTZ 096

ncbi_submitter: Metagenômica de microbiomas do Zoológico de São Paulo


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Spain: Tous; Valencia

ncbi_isolation_source: freshwater reservoir from 13m depth

ncbi_organism_name: Opitutia bacterium Tous-C5TDCM

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium Tous-C5TDCM


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Zhanjiang

ncbi_isolation_source: Grouper fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Sulfurimonas sp. NW7

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: University of Pretoria


ncbi_country: USA: California; Eel River; Mainstem Eel River; near confluence with Trout Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_07_MST_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: VA

ncbi_isolation_source: feces dirt from tomato field

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1838R

ncbi_submitter: Broad Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M137S2

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: France

ncbi_isolation_source: fermented milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 772

ncbi_submitter: Brigham Young University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Purdue University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Roraima

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: South Korea

ncbi_isolation_source: sediment

ncbi_organism_name: Snuella sedimenti

ncbi_submitter: Chung-Ang University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA

ncbi_isolation_source: Fungus Growing Termite

ncbi_organism_name: Streptomyces sp. SID4917

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Atlantic Ocean

ncbi_organism_name: Streptomyces sp. S07_1.15

ncbi_submitter: I3S - Instituto de Investigacao e Inovacao em Saude


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Medical University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan:Off Sendai; Ohtsuchi canyon site

ncbi_isolation_source: wood fall

ncbi_organism_name: Sphingobium xenophagum

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Choc5-1

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Changbai Mountains

ncbi_isolation_source: terrestrial hot spring

ncbi_organism_name: Caldicellulosiruptor changbaiensis

ncbi_strain_identifiers: CBS-Z

ncbi_submitter: Oakland University


ncbi_country: Spain: Catalunya

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: UPMC Children s Hospital of Pittsburgh; Pittsburgh; Pennsylvania

ncbi_isolation_source: laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: A909 Cas9 AEKO

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Zhanjiang

ncbi_isolation_source: Stewed meat

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hubei; Shayang

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: SY

ncbi_submitter: Huazhong Agricultural University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Colombia: Cali

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA6775

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6775


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ho Chi Minh City University of Technology (HCMUT), VNU-HCM


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Megasphaera sueciensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Liquorilactobacillus sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Corynebacterium aurimucosum ATCC 700975

ncbi_submitter: BGI


ncbi_isolation_source: Tilapia

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Mississippi State University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Rennes

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Acinetobacter pittii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Ontario;Conestogo River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: Siamese crocodiles

ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Hainan University


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Succinivibrio dextrinosolvens H5

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Planobispora siamensis

ncbi_strain_identifiers: TBRC 1829

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Lebanese American University


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium humi

ncbi_submitter: Dongguk university


ncbi_country: China: Shandong

ncbi_isolation_source: Water samples

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Liaocheng University


ncbi_isolation_source: human gut


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phytobacter sp.


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Saudi Arabia

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis M7124

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Malaysia

ncbi_isolation_source: lymph node biopsy of a Malaysian patient with suspected tuberculosis cervical lymphadenitis

ncbi_submitter: Universiti Malaya, Kuala Lumpur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii M18


ncbi_country: Chile

ncbi_isolation_source: catheter tip

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Pantoea sp. PNT01

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Capian Sea

ncbi_organism_name: Actinobacteria bacterium casp-actino5

ncbi_submitter: University of Tehran


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kueneniibacteriota;s__Candidatus Kuenenbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_11


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Beijing

ncbi_isolation_source: pond sediment

ncbi_organism_name: Olivibacter sp. SDN3

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: ACVEN

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Marinobacter sp. M-5

ncbi_submitter: Dongguk University


ncbi_organism_name: Christiangramia sp. LLG6405-1

ncbi_submitter: Station Biologique de Roscoff


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Candidatus Campylobacter infans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Endomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: China

ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: South Korea: Samcheok-si; Gangwon-do

ncbi_isolation_source: Freshwater Spring

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: Nebraska

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Nebraska Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN