ncbi_country: Antarctica: Ace Lake; Long Peninsula; Vestfold Hills

ncbi_isolation_source: Saline Meromictic Lake

ncbi_organism_name: Synechococcus sp. CS-601

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Philippines

ncbi_genome_representation: full

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_assembly_level: Complete Genome

ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces sp. NPDC058409

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: t

ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: lake water column

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India

ncbi_isolation_source: hot spring

ncbi_organism_name: Deinococcus sp. S9

ncbi_submitter: University of Delhi


ncbi_country: Germany

ncbi_isolation_source: feces from healthy individual

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_assembly_level: Chromosome

ncbi_organism_name: Planktothrix rubescens

ncbi_submitter: Justus Liebig Universitat


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Virginia

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: James Madison University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: India: Madurai

ncbi_isolation_source: cornea

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aravind Medical Research Foundation


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Prevotella sp. P5-108

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belarus: Minsk Region; Chervyen District

ncbi_isolation_source: rot potato tubers

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: China: Wenzhou

ncbi_isolation_source: ascitic fluid

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: McGill University


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Turicimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Phycisphaera sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: chicken legs and breast from supermarket

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human vagina

ncbi_organism_name: Lactobacillus isalae

ncbi_refseq_category: reference genome

ncbi_submitter: UANTW


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Sutterella sp.


ncbi_country: China

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella suis bv. 2 str. BCB032

ncbi_submitter: Beijing Institute of Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 2;x__Brucella suis bv. 2 str. BCB032


ncbi_country: Poland

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: NanKai universit


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_strain_identifiers: B

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Puniceicoccales bacterium Verruco_01


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: lamb

ncbi_organism_name: Clostridium gasigenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: HT 12

ncbi_submitter: Shihezi University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: wastewater from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Ecuador

ncbi_isolation_source: duodenum of female CD1 mouse

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Universidad San Francisco de Quito


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: MIT


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Collinsella sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Aggregatibacter sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Japan

ncbi_submitter: Institute for Genome Sciences, University of Maryland School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Actinotalea sp.

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: IL

ncbi_isolation_source: insect

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa04

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces iranensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: HXM

ncbi_submitter: Enze Hospital


ncbi_organism_name: Mesomycoplasma ovipneumoniae ATCC 29419

ncbi_submitter: Ningxia University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Neisseria sicca

ncbi_submitter: EMG


ncbi_country: USA: Spring Lake; San Marcos; Texas

ncbi_organism_name: Rheinheimera texasensis DSM 17496


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


gtdb_type_species_of_genus: t

ncbi_organism_name: Bradymonas sediminis


ncbi_organism_name: Streptomyces albus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Pelomonas sp. Root1237

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Caballeronia humi

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: SysMilk


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_organism_name: Hahella ganghwensis DSM 17046

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Jerez

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF25-23LB

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Faeces


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Jiaxing

ncbi_isolation_source: secretion

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella histicola

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: United Kingdom: Manchester

ncbi_isolation_source: sputum of child cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Sphingobacterium mizutaii

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces of healthy child (3 years and 2 months old; male)

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: United Kingdom

ncbi_strain_identifiers: ICMP 4460

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. atropurpurea


ncbi_country: Canada: Ontario

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India: Nimodi

ncbi_isolation_source: soil

ncbi_organism_name: Actinoplanes teichomyceticus ATCC 31121

ncbi_submitter: Bielefeld University


ncbi_submitter: Fudan University Huashan Hospital


ncbi_isolation_source: Solar saltern in Jeungdo

ncbi_organism_name: Echinicola jeungdonensis

ncbi_strain_identifiers: CECT 7682

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: bottom sediments

ncbi_organism_name: Pelosinus baikalensis

ncbi_submitter: Institute of Biochemistry and Physiology of Microorganisms


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: HUN-REN Veterinary Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Respiratory

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: insect gut

ncbi_organism_name: Lactiplantibacillus plantarum WJL

ncbi_strain_identifiers: WJL

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus HSOU6002

ncbi_submitter: Broad Institute


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: hydraulically fractured well fluid at Timepoint_82

ncbi_organism_name: Halanaerobium sp. T82-1

ncbi_submitter: The Ohio State University


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0024


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Germany

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Thailand: Roi et

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kasetsart University


ncbi_country: Brazil: Amazon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Marvinbryantia sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_isolate: AOP30_B2_surf _bin _2

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP30_B2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Brevundimonas sp. 3P6-tot-D

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Monash University


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella sp. SKLX113853

ncbi_submitter: Zhejiang university


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Luteococcus peritonei

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Vibrio diazotrophicus

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Snipe

ncbi_organism_name: Campylobacter lari

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil

ncbi_isolation_source: polluted water

ncbi_organism_name: Yersinia kristensenii


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Listeria seeligeri


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Blautia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Sao Paulo


ncbi_country: South Korea

ncbi_isolation_source: root

ncbi_organism_name: Paenibacillus artemisiicola

ncbi_submitter: Chungnam National University


ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Microcoleus sp. T3_A4

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaplasma marginale str. Mississippi

ncbi_strain_identifiers: Mississippi

ncbi_submitter: Washington State University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou university


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: Clostridioides difficile


ncbi_assembly_name: Rumen uncultured genome RUG10973

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: Fayetteville; Arkansas

ncbi_isolation_source: sludge from a nitrification basin of a wastewater treatment plant grown in increasingly acidic conditions in an aerobic bioreactor

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: USDA


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Antarctica: Vestfold Hills

ncbi_isolation_source: sea ice algal assemblage

ncbi_organism_name: Gelidibacter gilvus

ncbi_submitter: University of Tasmania


ncbi_submitter: Stanford University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing; Jiangsu

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0914

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Agrobacterium tomkonis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Belgium

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: alpha proteobacterium MED-G10

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Pseudohongiella nitratireducens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CDC


ncbi_organism_name: Kistimonas scapharcae


ncbi_organism_name: Faucicola osloensis

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_country: Brazil: Parana

ncbi_isolation_source: combined sewer

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: UFPR


ncbi_organism_name: Methylomagnum ishizawai

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai Jiaotong University school of medicin


ncbi_isolation_source: Hamstring

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: EMG


ncbi_country: USA: Iowa

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_country: USA: NH; Town of Hanover

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. HNG

ncbi_strain_identifiers: HNG

ncbi_submitter: Colby Sawyer College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HNG


ncbi_country: New Zealand

ncbi_isolation_source: ovine brain

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_organism_name: Streptococcus suis 4961

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Staphylococcus aureus M1193

ncbi_submitter: Broad Institute


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_isolation_source: Wastewater

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bifidobacterium sp. UMB6791A

ncbi_submitter: Loyola University Chicago


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090519-7m_bin-1640

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Bacteroides eggerthii


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Candidatus Aquirickettsiella gammari

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Salmonella sp. NW1198

ncbi_submitter: Sichuan University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces sp. NBC_00656

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Panama: Gamboa

ncbi_organism_name: Pseudonocardia sp. Ae168_Ps1

ncbi_submitter: University of East Anglia


ncbi_country: USA: northwestern Montana; Middle Fork Flathead River; Nyack Floodplain

ncbi_organism_name: Pedobacter alluvionis

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Bole;Xinjiang

ncbi_isolation_source: Raw chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_isolation_source: caecum

ncbi_organism_name: Anaeromassilibacillus sp. An172


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: South Korea

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio algarum

ncbi_submitter: Chung-Ang university


ncbi_country: Italy: Modena

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Charles University in Prague


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Minnesota


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Dialister sp.


ncbi_country: Israel: Karie Deshe

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Weizmann Institute


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Rubrobacteraceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Planctomycetota bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella sp. BIOML-A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 194 (4-2356805)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 194 (4-2356805)


ncbi_country: USA: Kansas

ncbi_isolation_source: Plant leaves

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: Colorado State University


ncbi_country: USA: PA

ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00323


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: USA: St. Paul; MN

ncbi_organism_name: Xanthomonas prunicola

ncbi_submitter: Facultad de Quimica, Universidad de la Republica


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: USA: Georgia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose-alginate mix 40-100 m particle (artificial) late colonization

ncbi_organism_name: Vibrio hepatarius


ncbi_country: Germany: Rendsburg-Eckernfoerde (district); Schleswig-Holstein

ncbi_isolation_source: raw milk (vending machine)

ncbi_organism_name: Aliarcobacter butzleri

ncbi_strain_identifiers: RMI

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: The Rockefeller University


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_isolation_source: tobacco rhizosphere

ncbi_organism_name: Agrobacterium fabacearum P4

ncbi_submitter: Institut des Sciences du vegetal


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_assembly_name: IMG-taxon 2634166363 annotated assembly

ncbi_organism_name: Microbacterium hydrocarbonoxydans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185292 annotated assembly

ncbi_organism_name: Achromobacter sp. NFACC18-2


ncbi_organism_name: Woeseia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA867

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA867


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sheep fecal samples collected from floor of farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_country: Germany: Berlin

ncbi_isolate: RDOM

ncbi_isolation_source: beetle abdomen

ncbi_strain_identifiers: RDOM

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Shikimatogenerans;s__Candidatus Shikimatogenerans bostrichidophilus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: University of Utah


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_submitter: Toho University


ncbi_assembly_name: IMG-taxon 2619619029 annotated assembly

ncbi_organism_name: Myxococcus virescens


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriales bacterium TMED191

ncbi_submitter: University of Southern California


ncbi_organism_name: Hallerella porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Streptococcus agalactiae GB00663

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: USA

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: biofilter; animal-rendering plant

ncbi_organism_name: Pseudonocardia sulfidoxydans NBRC 16205

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: LNCC


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Portugal

ncbi_isolation_source: Ewe s raw milk cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_country: China: Ningxia

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: Germany: Freising

ncbi_organism_name: Baileyella intestinalis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA11304

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Hohenheim


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Nanjing University


ncbi_organism_name: Microbacterium sp. YY-03

ncbi_submitter: Beijing Technology and Business University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pedococcus sp. NPDC057267

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ochrobactrum sp. BD61

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Staphylococcus aureus M0964

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Candidatus Villigracilis propinquus

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Candidatus Villigracilaceae;g__Candidatus Villigracilis;s__Candidatus Villigracilis propinquus


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Deltaproteobacteria bacterium UBA2361

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA2361


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium animalis


ncbi_country: USA: WI

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Acidibacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_strain_identifiers: MOL

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Collinsella aerofaciens ATCC 25986

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_country: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kazan

ncbi_isolation_source: surface of urinary catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Poland: Warsaw

ncbi_isolation_source: sewage sludge

ncbi_organism_name: Rummeliibacillus sp. POC4

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_isolation_source: Breast milk fed infants

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Parma


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter cloacae complex sp.

ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter sp. CIP 102159

ncbi_submitter: Broad Institute


ncbi_assembly_name: Buchnera aphidicola (Ceratovacuna japonica) strain CjNOSY1 v. 1.0

ncbi_country: Japan:Nagano; Norikura

ncbi_isolation_source: whole body of the eusocial aphid; Ceratovacuna japonica strain NOSY1

ncbi_submitter: Laboratory of Evolutionary Genomics, National Institute for Basic Biology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR17b

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Food

ncbi_organism_name: Listeria ilorinensis

ncbi_submitter: Institut Pasteur


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Vibrio owensii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Pontiella sp.

ncbi_submitter: Harvard University


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_submitter: Nottingham Trent University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H65830


ncbi_assembly_name: assembly Coobra isolate 4

ncbi_isolation_source: Alpha-amylase enzym 4g (Coobra)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sciensano


ncbi_country: USA: WA

ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: University of Washington


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AF41-2BH

ncbi_submitter: BGI-Shenzhen


ncbi_country: Japan

ncbi_isolation_source: food

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12501

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. H2495

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. H2495


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Rickettsia monacensis

ncbi_strain_identifiers: IrR;Munich

ncbi_submitter: UMENT


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Spain

ncbi_isolation_source: Hospital Vall d Hebron (Barcelona)

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: CNAG-CRG


ncbi_country: United Kingdom: University of Surrey

ncbi_isolation_source: lake

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Imperial College London


ncbi_organism_name: Vibrio olivae

ncbi_strain_identifiers: CECT 8064

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14084


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhizobium sp. SG570

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_assembly_name: freshwater MAG --- Loclat_bin-20621

ncbi_isolation_source: lake water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Galway


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2767

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2767


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus KINW6033

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Mahidol University


ncbi_organism_name: Lysobacter sp. Hz 25

ncbi_strain_identifiers: Hz 25

ncbi_submitter: Siberian Institute of Plant Physiology and Biochemistry SB RAS


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sphaerobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Winogradskyella sp. A3E31

ncbi_submitter: Shandong University at Weihai


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 121

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Chile

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Desulforudis sp. 1031

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Candidatus Desulforudaceae;g__Candidatus Desulforudis;x__unclassified Candidatus Desulforudis;s__Desulforudis sp. 1031


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. ORST4


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Veterinary

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Infection and Global Health, University of Liverpool


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Fer2-1

ncbi_submitter: University of Texas at Austin


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Bacteroides fluxus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: China: Qingdao; Shandong

ncbi_isolation_source: refrigerated Litopenaeus vannamei

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Ocean University of China


ncbi_country: China: Sichuan Province

ncbi_isolation_source: Large-scale pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Norway

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12187

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Bronchoscope from bronchoalveolar lavage (BAL)

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: China: Jiangsu

ncbi_isolation_source: nasal cavity

ncbi_submitter: Yangzhou University


ncbi_country: China: Bohai Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Roseibium sediminis

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Spain: Madrid

ncbi_submitter: IRYCIS


ncbi_isolation_source: Joint

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: IMG-taxon 2636416028 annotated assembly

ncbi_organism_name: Pelosinus propionicus DSM 13327

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Colombia: Arauca; Cano Limon crude oil extraction camp

ncbi_isolation_source: crude oil residual water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Michigan State University, Research Technology Support Facility - Genomics


ncbi_country: South Korea: Chungnam National University (CNU) agricultural research site

ncbi_isolation_source: rice paddy soil

ncbi_organism_name: Aeromonas sp. DNRA1

ncbi_submitter: KAIST


ncbi_country: USA: VA

ncbi_isolation_source: ATCC Isolate

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: MS

ncbi_isolation_source: Knee wound

ncbi_organism_name: Staphylococcus aureus DAR3894

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Tropheryma whipplei

ncbi_submitter: Peking University Shenzhen Hospital


ncbi_organism_name: Kocuria palustris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: South Korea: Chungcheongnam-do province; Taean-gun; Wonbuk-myeon district; Sindu-ri beach

ncbi_isolation_source: beach sediment

ncbi_organism_name: Nocardioides litoris

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Antarcticibacterium sp.


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: caecum

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Microcoleus vaginatus FACHB-2002

ncbi_submitter: Institute of Hydrobiology


ncbi_isolation_source: metagenome

ncbi_organism_name: Geobacter sulfurreducens

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space Swab

ncbi_organism_name: Rothia sp. p3-SID1597

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. p3-SID1597


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river near WWTP effluent

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Streptococcus agalactiae LADL_05-108a

ncbi_submitter: IP


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM3147

ncbi_submitter: IGS


ncbi_isolation_source: Dairy

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: Lebanon: Beqaa Valley

ncbi_isolation_source: drinking water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Pakistan

ncbi_isolation_source: wound

ncbi_submitter: FDA


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: Dr. A L Mudaliar Post Graduate Institute of Basic Medical Sciences, University of Madras


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_submitter: MPIPZ


ncbi_organism_name: Moheibacter stercoris

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Klebsiella sp. R65

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Staphylococcus sp. IPLA37012

ncbi_submitter: IPLA-CSIC


ncbi_organism_name: Sorangium sp. So ce134

ncbi_strain_identifiers: So ce134

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce134


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rickettsia sibirica

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: MRSN BI Team


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Holdemanella porci


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Cronobacter sakazakii

ncbi_strain_identifiers: S43 TF

ncbi_submitter: University of Dhaka


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Argentina

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Enterococcus sp. 2STP

ncbi_submitter: Anand Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: pork salami

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: plant

ncbi_organism_name: Candidatus Phytoplasma solani

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrXII (Stolbur group);s__Candidatus Phytoplasma solani


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster;s__Enterocloster hominis (ex Liu et al. 2021)


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Northumbria University


ncbi_isolation_source: sewage

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Dickeya chrysanthemi Ech1591

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Portugal: Ria de Aveiro; Aveiro

ncbi_organism_name: Salinicola halimionae

ncbi_submitter: Universidade de Aveiro


ncbi_organism_name: Chlamydia trachomatis RC-F(s)/852

ncbi_submitter: Oregon State University


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Actinomyces bowdenii

ncbi_submitter: King's College London


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Uruguay: Colonia

ncbi_isolation_source: lymph nodes

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Luteimonas sp. MC1782

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: Caecum


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Brucella anthropi


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Pseudomonas syringae UMAF0158

ncbi_submitter: CBGP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae UMAF0158


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA3472

ncbi_submitter: University of Queensland


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Lishizhenia sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK160

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_isolation_source: environmental material [ENVO:00010483]

ncbi_organism_name: Pseudomonas sp. PS1(2021)

ncbi_submitter: Jinan University


ncbi_country: South Korea

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea: Seoul

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: Missouri; Town and Country

ncbi_isolation_source: blood

ncbi_organism_name: Morganella morganii

ncbi_submitter: Washington University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: organic black pepper

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000219


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA

ncbi_isolation_source: sludge from a mesophilic anaerobic wastewater digester enriched on phosphite and carbon dioxide

ncbi_organism_name: Tepidanaerobacter sp. EBM-38

ncbi_submitter: UC Berkeley


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: Australia: Tasmania

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Tasmania


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Centers for Disease Control and Prevention