ncbi_organism_name: Streptomyces sp. NPDC004629

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Kenya Medical Research Institute


ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean university of China


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_country: USA: Stillwater; Oklahoma

ncbi_isolation_source: ACCM-D media

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Cb NMII RSA 439 passage 67

ncbi_submitter: Oklahoma state university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Prevotella sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 216

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 4210

ncbi_submitter: University of Calgary


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Pseudonocardiales bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: China: Qixian

ncbi_isolation_source: Cave

ncbi_organism_name: Microbacterium sp. CFH 31415

ncbi_submitter: Henan Normal University


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Government of Canada


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_country: Czechoslovakia

ncbi_submitter: HUAZHONG AGRICULTURAL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar galleriae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: HCA1 bin15

ncbi_organism_name: Succiniclasticum sp.

ncbi_strain_identifiers: HCA1 bin15

ncbi_submitter: China Agricultural University


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_submitter: University of Oxford


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Henan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Citromicrobium sp.

ncbi_submitter: EMG


ncbi_country: USA: MA

ncbi_isolation_source: shrimp


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Belgium: Sint-Truiden

ncbi_isolation_source: soil

ncbi_organism_name: Hyphomicrobium sulfonivorans

ncbi_submitter: KU Leuven


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaerosporobacter sp.


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_level: Chromosome

ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Neisseria sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Philippines

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Uganda: Mbale

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Foot

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy: Milan

ncbi_isolation_source: Prosthetic joint infection Knee

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_strain_identifiers: Eklund 17B

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum B;x__Clostridium botulinum B str. Eklund 17B (NRP)


ncbi_country: Colombia: Bogota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Neobacillus soli NBRC 102451

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Neobacillus;s__Neobacillus soli;x__Neobacillus soli NBRC 102451

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_country: USA: Washington

ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Luzhou

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Taiwan

ncbi_isolation_source: Nose

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Streptomyces sp. NPDC047706

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Methyloceanibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0049

ncbi_submitter: Broad Institute


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL087PA2

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12152

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Prince Msheyeni

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0010


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acetobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Nocardioides renjunii

ncbi_refseq_category: reference genome

ncbi_submitter: China CDC


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Tsinghua University


ncbi_organism_name: Streptomyces sp. URMC 129

ncbi_strain_identifiers: URMC 129

ncbi_submitter: University of Rochester


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Porphyromonas gingivalis


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: USA: Colorado

ncbi_isolation_source: uterus

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_organism_name: Bacteroidetes bacterium 4572_117

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium 4572_117


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: India: Kerala

ncbi_isolation_source: Marine sediment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CSIR-Central Food Technological Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: China: Wuhan

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. B3G-3

ncbi_submitter: Hubei University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: NCIMB 8964

ncbi_submitter: Agroscope


ncbi_country: Japan: Yokosuka City

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces yokosukanensis

ncbi_submitter: Bielefeld University


ncbi_country: China: Yunnan

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of Kansas


ncbi_assembly_name: Rumen uncultured genome RUG13545

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: North Sea: German Bight; Helgoland; Kabeltonne

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. H71

ncbi_submitter: University of Arizona


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Bacteroides sp.


ncbi_country: Brazil: Mato Grosso

ncbi_isolation_source: lymph nodes

ncbi_submitter: Cuiaba University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Ileibacterium valens


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Candidatus Thioglobus autotrophicus

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus autotrophicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus autotrophicus


ncbi_organism_name: Streptomyces murinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2681812934 annotated assembly

ncbi_organism_name: Pontibaca methylaminivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Changping District; Beijing

ncbi_isolation_source: Ocular surface

ncbi_organism_name: Paracoccus shanxieyensis

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_country: China

ncbi_isolation_source: secreta

ncbi_submitter: Yangzhou University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: China CDC


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Sphingopyxis sp. H050

ncbi_submitter: US EPA


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_submitter: University of Oslo


ncbi_organism_name: Thiogranum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Quisquiliibacterium transsilvanicum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Sinorhizobium fredii HH103

ncbi_submitter: Center for Biotechnology, Bielefeld University, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii HH103


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA

ncbi_isolation_source: Small intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Firmicutes bacterium UBA4774

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4774


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR30611

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: crude oil contaminated soil

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Yan'an University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa

ncbi_organism_name: Mycolicibacterium monacense

ncbi_submitter: JCVI


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_organism_name: Sulfuricella sp. T08

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB12-315

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CGMCC 14177

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: AOP19_E1_surf _bin _17

ncbi_organism_name: Marinomonas sp.

ncbi_strain_identifiers: AOP19_E1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Nigeria: Uvuru

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC 01325

ncbi_submitter: McMaster University


ncbi_organism_name: Ectopseudomonas khazarica


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge; Logachev

ncbi_isolation_source: hydrothermal vent -3000 m

ncbi_organism_name: Caldithrix abyssi DSM 13497

ncbi_submitter: Winogradsky INMI RAS


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: Mesobacillus foraminis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S25

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Calgary


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_isolation_source: metagenome

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Health


ncbi_strain_identifiers: BGSC 4U1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kyushuensis


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: CSIR-National Institute of Oceanography


ncbi_assembly_name: Rumen uncultured genome RUG11706

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: California Institute of Technology


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: EMG


ncbi_country: Belgium: Coupure canal

ncbi_isolation_source: Bicycle in the canal

ncbi_organism_name: Shewanella sp. 4t3-1-2LB

ncbi_submitter: Aarhus University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWB1_38_8


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: National University of Singapore


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Hangzhou

ncbi_isolation_source: skin swab sample

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus hominis;sb__Staphylococcus hominis subsp. hominis;x__Staphylococcus hominis subsp. hominis ZBW5


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: China Agricultural University


ncbi_country: France: Marseille

ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseillee


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Allisonella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA7722


ncbi_assembly_name: Yersinia pestis_M-1453

ncbi_country: Kazakhstan: Guryev region; Makhambet district

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Norway: Trondheim

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: St. Olav University Hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: urinary tract

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: India: Odisha hot spring

ncbi_isolation_source: sediment sample

ncbi_organism_name: Lysinibacillus sp. JK80

ncbi_submitter: Institute of Life Sciences


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: Casing

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-349-O05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Africa: Capetown

ncbi_isolation_source: flocculating fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil: Sao Paulo; SP

ncbi_isolation_source: Thermophilic and cellulolytic compost-derived microbial consortium ZCTH02

ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Nocardia tengchongensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Georgia

ncbi_isolation_source: poultry carcass

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: pickled radish

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Jiangsu University


ncbi_organism_name: Shouchella clausii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKVB

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Vellore Institute of Technology


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine environment

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: national institute of biology


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom

ncbi_isolation_source: sewage influent

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nose

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Argentina

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: South Korea

ncbi_organism_name: Saccharibacillus brassicae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Mycolicibacterium monacense DSM 44395

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: uncultured Maribellus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Uniformed Services University


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Herminiimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacillus sp. FSL K6-0036

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0036


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Cadmium-contaminated soil

ncbi_organism_name: Leifsonia sp. NCR5

ncbi_submitter: LaTrobe University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0409

ncbi_submitter: Broad Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG13233

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Faeces


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 24860_8

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Mesorhizobium sp. M0052

ncbi_submitter: Washington State University


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: Veterinary Research Institute


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-7084

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Qingdao

ncbi_isolation_source: culture of a cyanobacterium Synechococcus

ncbi_organism_name: Roseicyclus marinus

ncbi_submitter: Quanzhou Normal University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: Raw Egg

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Chile: Santiago

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat cut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_country: France: Normandy

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Portugal: Porto

ncbi_isolation_source: poultry carcass 2

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_submitter: Chouaib Doukkali University


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-19642

ncbi_organism_name: uncultured Flavobacteriia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__environmental samples;s__uncultured Flavobacteriia bacterium


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: United Kingdom

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_strain_identifiers: NCPPB 1495

ncbi_submitter: University of Exeter


ncbi_assembly_name: 77CS OP9 bin

ncbi_isolation_source: in situ cellulolytic enrichments in hot spring GBS

ncbi_submitter: University of Nevada, Las Vegas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Atribacteria;o__Atribacterales;f__Candidatus Caldatribacteriaceae;g__Candidatus Caldatribacterium;s__Candidatus Caldatribacterium saccharofermentans;x__Candidatus Caldatribacterium saccharofermentans OP9-77CS


ncbi_organism_name: Novosphingobium taihuense

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2596583572 annotated assembly

ncbi_organism_name: Sinomicrobium oceani

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_organism_name: Clostridioides difficile P29

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Portugal: Requeixada; Ms; Torre de Moncorvo

ncbi_isolation_source: benthic mat; on an ephemeral stream

ncbi_organism_name: aff. Roholtiella sp. LEGE 12411

ncbi_submitter: CIIMAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Fortieaceae;g__Roholtiella;x__unclassified Roholtiella;s__aff. Roholtiella sp. LEGE 12411


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-04

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces cacaoi

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O26:H11 str. CVM10026

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. CVM10026


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus mitis bv. 2 str. SK95

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus oralis;sb__Streptococcus oralis subsp. dentisani;x__Streptococcus mitis bv. 2 str. SK95


ncbi_country: Italy: Florence

ncbi_isolation_source: pharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_isolate: SPRUCE 66

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SPRUCE 66

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Waltera sp.


ncbi_organism_name: Salmonella sp. SJTUF15614

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Sunxiuqinia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Biology Centre CAS


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Human vagina

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Mexico: Puebla

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: BUAP


ncbi_submitter: CRC AquaDiva


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Uberlandia


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_44_21


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Illinois

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: Warren

ncbi_submitter: RMIT


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine from 45 year-old man with urinary tract infection

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_country: China: Hangzhou

ncbi_isolation_source: skin

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: Aarhus University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: ncipd


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Ileo-caecum


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecium MRSN 3418

ncbi_strain_identifiers: MRSN 3418

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecium;x__Enterococcus faecium MRSN 3418


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_organism_name: Bacillus sp. FSL K6-0972

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0972


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_organism_name: Streptomyces sp. NPDC088183

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-127

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: Rice root associated bacteria

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_assembly_name: IMG-taxon 2739368070 annotated assembly

ncbi_organism_name: Rhodobacter maris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella sp. KGM-IMP216

ncbi_submitter: LAU


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Leuconostoc rapi

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG11554

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: PAGS


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cellvibrio sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: clinical

ncbi_submitter: The University of Sydney


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transcending colon brush

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of New Hampshire


ncbi_country: USA: PA

ncbi_isolation_source: lung

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Salmonella enterica CVM N43465 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Crateriforma spongiae

ncbi_submitter: QIBEBT


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_strain_identifiers: Gladysdale

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides;x__Mycoplasma mycoides subsp. mycoides SC;x__Mycoplasma mycoides subsp. mycoides SC str. Gladysdale


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Urine

ncbi_organism_name: Leptospira interrogans serovar Hardjo

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola Univeristy Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_country: Brazil

ncbi_isolation_source: Coastal Water

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium riegelii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: Sheba medical center


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3105

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Tangshan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Olleya sp. YS

ncbi_strain_identifiers: YS

ncbi_submitter: Wonkwang University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudanabaena sp. CCNP1317

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Alistipes finegoldii


ncbi_submitter: University of Thessaly


ncbi_organism_name: uncultured Fervidobacterium sp.


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sideroxyarcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China-Japan friendship hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Sphingomonas japonica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_country: China: Shangdong

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mice gut

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Pseudomonas orientalis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR7343

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_organism_name: Candidatus Cloacimonas sp. 4484_275

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp. 4484_275


ncbi_country: China: Yiyang City; Hunan Province

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis YY060816


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: PUS

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Surgical ICU

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Washington


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: United Kingdom

ncbi_isolation_source: Plant material

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_organism_name: Atlantibacter hermannii


ncbi_isolate: delta-vioS

ncbi_organism_name: Chromobacterium subtsugae

ncbi_strain_identifiers: delta-vioS

ncbi_submitter: Johns Hopkins University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 39 (4-2679949)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 39 (4-2679949)


ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: USA: Minnesota

ncbi_isolation_source: laboratory mutant of 6535

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Texas at San Antonio


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Somalia

ncbi_isolation_source: goat milk products

ncbi_organism_name: Weissella confusa

ncbi_submitter: Brigham Young University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SMP-MS

ncbi_submitter: Nigerian Institute of Medical Research, Yaba


ncbi_organism_name: Streptomyces sp. NPDC046977

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: Cornell University


ncbi_organism_name: Cellvibrionaceae bacterium SEMH9

ncbi_submitter: Quanzhou Normal University


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. TM06-3

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Argentina: Neuquen

ncbi_isolation_source: Andacollo gold mining area

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: Relave Viejo Slurry microbial consortium


ncbi_country: France

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Escherichia coli B354


ncbi_country: China

ncbi_isolation_source: desert environment

ncbi_organism_name: Sphingosinicella terrae

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii serovar Javanica;x__Leptospira borgpetersenii serovar Javanica str. L0066


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_submitter: China Agricultural University


ncbi_submitter: Xianghu Laboratory


ncbi_country: Pakistan: Okara

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_51_10


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: dahi

ncbi_strain_identifiers: DMR 17

ncbi_submitter: sikkim university


ncbi_country: China: Xiantao County; Jiahe Village

ncbi_isolation_source: high-arsenic sediment

ncbi_organism_name: Citrobacter sp. L55

ncbi_submitter: China Univercity Of Geosciences(WuHan)


ncbi_assembly_name: L.paracasei Lpp225.v.1

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp225


ncbi_organism_name: Citrobacter freundii


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: Paraliobacillus sp. JSM ZJ581

ncbi_strain_identifiers: JSM ZJ581

ncbi_submitter: Jishou University


ncbi_isolation_source: blood culture

ncbi_submitter: Ausgem


ncbi_organism_name: Legionella sp.

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_organism_name: Pararhizobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: stratosphere at an altitude of 41.4 km

ncbi_organism_name: Janibacter hoylei PVAS-1

ncbi_submitter: National Centre for Cell Science


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: sediment

ncbi_organism_name: Leisingera daeponensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Yonsei University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K6590

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K6590


ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: CNR


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Flagellimonas sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_B12


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: bitBiome, Inc.


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_assembly_name: freshwater MAG --- MJ110712A_bin-207

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Candidatus Endobugula sp.


ncbi_country: Germany: Bremen; pond; freshwater sediment

ncbi_isolation_source: autotrophic NRFeOx enrichment culture BP inoculated with freshwater sediment

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Tuebingen


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium UBA2190


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacillales bacterium UBA7004


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Vibrio sp. Vb2978

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Sysuimicrobium calidum

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R598;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Netherlands: Wageningen

ncbi_isolation_source: root nodule

ncbi_organism_name: Frankia nepalensis

ncbi_submitter: Texas State University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Fankou; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases, Japan


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Thailand: Bangkok

ncbi_submitter: Chulalongkorn University


ncbi_country: China: Anhui

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O121:H19 str. 03-3227

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 03-3227


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: The Volodga region

ncbi_isolation_source: herring

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Streptococcus sp. SN-1

ncbi_submitter: Microbiology and Immunology, Nihon University School of Dentistry at Matsudo


ncbi_country: China: Xinjiang

ncbi_isolation_source: sediment of salty lake

ncbi_organism_name: Cyclobacterium roseum

ncbi_strain_identifiers: SYSU L10180

ncbi_submitter: Xinjiang Institute of Ecology and Geography


ncbi_country: Taiwan: New Taipei

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research