ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Contig

ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bhagwan Mahavir University


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nocardiopsis rhodophaea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-5616

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: France: Beaumont

ncbi_isolation_source: Unknow

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan: Faisalabad

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia:Moscow Region

ncbi_organism_name: Lelliottia sp. F154

ncbi_submitter: Institute of Bioorganic Chemistry


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmv

ncbi_submitter: NHGRI/NIH


ncbi_assembly_level: Chromosome

ncbi_country: Colombia

ncbi_isolation_source: Urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Antioquia


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Madurai Kamaraj University


gtdb_representative: t

ncbi_organism_name: Pseudolabrys sp.


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0058

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Taiwan

ncbi_submitter: Chung Shan Medical University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yunnan University


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: China: Jiangsu

ncbi_isolation_source: environment

ncbi_submitter: Yangzhou univeristy


ncbi_submitter: UMR 1137 IAME


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-018

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_country: Colombia: Antioquia; Bello

ncbi_submitter: University of Antioquia


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_03_ELD_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: rectal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2506210005 annotated assembly

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus thermosulfidooxidans;x__Sulfobacillus thermosulfidooxidans DSM 9293

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Upper Niagara River

ncbi_isolation_source: a microcosm of filter-sterilized Niagara River water spiked with Yersinia pestis A1122

ncbi_organism_name: Hylemonella gracilis str. Niagara R

ncbi_strain_identifiers: Niagara R

ncbi_submitter: CUBRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Hylemonella;s__Hylemonella gracilis;x__Hylemonella gracilis str. Niagara R


ncbi_isolate: SPRUCE 667

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 667

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia ilealis


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: USDA ARS


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: UCM


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_country: Switzerland

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D55P-1

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Mailhella sp.


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Escherichia coli 668

ncbi_submitter: University Medical Center Utrecht


ncbi_country: Germany: Dusseldorf

ncbi_isolation_source: Tap water

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: LNCC


ncbi_country: United Kingdom

ncbi_strain_identifiers: BGSC 4U1

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kyushuensis


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV201

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stanford University


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Ontario;Guelph

ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWF2_44_350


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-497

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Parabacteroides distasonis


ncbi_assembly_name: Rumen uncultured genome RUG242

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Marinoscillum sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (large; >=63 micrometer filter)

ncbi_organism_name: Vibrio cyclitrophicus ZF170

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mexico: Reynosa

ncbi_isolation_source: plant rhizosphere soil

ncbi_organism_name: Stenotrophomonas sp. ATCM1_4

ncbi_submitter: CBG Instituto Politecnico Nacional


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Deltaproteobacteria bacterium UBA4075

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA4075


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_submitter: MRSN BI Team


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: Human

ncbi_isolation_source: Acne pustule

ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Department of Clinical Microbiology, Tokyo University of Pharmacy and Life Sciences


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Metchosin

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: Pectobacterium sp. 1950-15

ncbi_submitter: Cornell University


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_organism_name: Flavobacterium enshiense DK69

ncbi_submitter: Seoul National University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: JCVI


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Tharpella aukensis

ncbi_submitter: California Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Tharpellota;c__Candidatus Tharpellia;o__Candidatus Tharpellales;f__Candidatus Tharpellaceae;g__Candidatus Tharpella;s__Candidatus Tharpella aukensis


ncbi_organism_name: Peptostreptococcus sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitrincola sp.


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfatitalea sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Henan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Washington


ncbi_country: Pacific Ocean: Solomon Sea

ncbi_organism_name: Pseudoalteromonas ruthenica

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridia bacterium


ncbi_assembly_name: IMG-taxon 2657245713 annotated assembly

ncbi_organism_name: Streptomyces sp. SolWspMP-sol7th

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Feces

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_1


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: rice

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Malaya


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Indian Ocean

ncbi_isolation_source: marine sample

ncbi_organism_name: Salinicola salarius

ncbi_submitter: Zhejiang University of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_organism_name: Streptomyces sp. NPDC059161

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gardnerella sp. KA00225

ncbi_submitter: Fred Hutch


ncbi_organism_name: Streptomyces sp. NPDC057837


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Bradyrhizobium viridifuturi

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Monoglobus pectinilyticus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Pseudomonas palleroniana

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Limnohabitans sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Aliivibrio sifiae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: UNIVERSITY OF MELBOURNE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Mangrove Sea

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangxi University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_country: Turkey: Adana

ncbi_isolation_source: Nursery

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: University of Bristol


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Australia: Newcastle

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Norway: Norwegian sea

ncbi_organism_name: Psychrobacter sp. P2G3

ncbi_submitter: Norwegian University of Science and Technology


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: India: Trans-Himalayan region of Ladakh; Lotus Pond Hot Spring

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Bose Institute


ncbi_submitter: Brown University


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Parvibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: DSMZ Isolate

ncbi_organism_name: Nocardia abscessus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum

ncbi_submitter: SC


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: bacterium ADurb.Bin157

ncbi_submitter: University of Illinois


ncbi_submitter: Makerere University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Mobilibacterium timonense

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Vitreoscilla sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: Campylobacter jejuni CVM N534 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: CVM N534

ncbi_submitter: FDA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Vagococcus carniphilus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-0589

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Birmingham


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: cervix

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Tasman Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Synechococcus sp. MU1643

ncbi_submitter: Macquarie University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium CG_4_8_14_3_um_filter_43_15


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sp.


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Camelliibacillus cellulosilyticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Zhejiang University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA980

ncbi_submitter: University of Queensland


ncbi_organism_name: Acetobacter sp. 46_36

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Grupo de Microbiologia


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei university college of medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_country: Honduras

ncbi_organism_name: Candidatus Riesia pediculicola

ncbi_strain_identifiers: HHBH

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Enterobacter cloacae complex sp. 413K2

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 413K2


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: NHGRI/NIH


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0083

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Group Que, Inselspital Bern


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: hydrothorax

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: LSHTM


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea: Chungbuk

ncbi_submitter: Chungbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. atrofaciens;x__Pseudomonas syringae pv. atrofaciens LMG 5095


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from neonate

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Ireland

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University College Cork


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-01964

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: France: Lille


ncbi_organism_name: Phytobacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Fusobacteriaceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: S. Gallicano Institute, IRCCS


ncbi_organism_name: Actinomadura yumaensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Switzerland: Romanshorn

ncbi_isolation_source: stream surface water

ncbi_submitter: University of Zurich


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Cepheid


ncbi_organism_name: Flexilinea sp.


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Liverpool


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter sp. AOR34_HL

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yakult Central Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Meat processing equipment

ncbi_organism_name: Clostridium sp. CS001


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU patient oral swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Birmingham


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: USA:Hawaii; Oahu

ncbi_isolation_source: Seawater enrichment with lysine

ncbi_organism_name: Bisbaumannia pacifica

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: Food Associated Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_country: China: Qinghai province; Qinghai-Tibetan Plateau

ncbi_isolation_source: sand

ncbi_organism_name: Massilia arenae

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans B23Sm1

ncbi_submitter: New York University College of Dentistry


ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California

ncbi_organism_name: Streptomyces pratensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: BGI


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: India: Zendewadi; Pune

ncbi_isolation_source: pea root nodules

ncbi_organism_name: Rhizobium sp. MHM7A

ncbi_submitter: National Centre for Cell Science


ncbi_country: India: Hiriyur

ncbi_isolation_source: Plant phylloplane

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Agricultural Sciences


ncbi_country: Russia: Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Princeton University


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: India

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Institut Pasteur


ncbi_country: China: Hengyang

ncbi_isolation_source: Liver puncture

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Germany: Luebeck

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: China: Jiaxing

ncbi_submitter: Jiaxing Center for Disease Control and Prevention


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Thermoflavifilum sp.

ncbi_submitter: University of British Columbia


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces sp. NPDC059629

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_strain_identifiers: ABFRF

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Africa: Finsch mine in Finsch district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Vogesella fluminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Dolichospermum lemmermannii FEM_B0920

ncbi_submitter: National Biodiversity Future Centre


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: Nasopharygneal lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: MRSN BI Team


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 2485AR

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: East of China Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Marinomonas lutimaris

ncbi_submitter: Tongji University


ncbi_isolation_source: Human (Stool)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: Acinetobacter sp. N54.MGS-139

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Bdellovibrio sp.


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Normandie Univ


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Brevundimonas vesicularis

ncbi_submitter: The Fifth Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pedobacter sp. CG_S7

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Prevotella sp. UBA5387

ncbi_submitter: University of Queensland


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 102

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 194

ncbi_submitter: University of Calgary


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: SOAPdenovo

ncbi_organism_name: Priestia megaterium MSP20.1

ncbi_submitter: Directorate of Groundnut Research (Indian Council of Agricultural Research)


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: BAL

ncbi_organism_name: Mycobacterium tuberculosis BTB11-001

ncbi_submitter: Broad Institute


ncbi_country: Spain: Valencia

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: PatientL

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California

ncbi_isolation_source: California sea lion

ncbi_organism_name: Campylobacter insulaenigrae

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: China: Luzhou

ncbi_organism_name: Acholeplasmataceae bacterium UBA7643

ncbi_submitter: University of Queensland


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Phocaeicola dorei


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom: Kent; England

ncbi_isolation_source: deep well

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium aquatile;x__Flavobacterium aquatile LMG 4008 = ATCC 11947


ncbi_country: USA: Kansas

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094177


ncbi_country: Australia

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Ensifer sp. WSM1721

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Klebsiella quasipneumoniae subsp. similipneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Antarctica

ncbi_isolation_source: Soil from ice-free area

ncbi_organism_name: Streptomyces fildesensis

ncbi_submitter: Universidad de Antofagasta


ncbi_country: China

ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus cereus


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Desulfovibrio sp. OH1186_COT-070

ncbi_submitter: UC Davis


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Unique Biotech Limited


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: ATCC 9754

ncbi_submitter: CDC


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: India

ncbi_isolation_source: breast milk

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: URCS 11

ncbi_submitter: Kangwon National University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Anaeroglobus geminatus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Africa: Northern Cape Province

ncbi_isolation_source: Ear tissue

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_organism_name: Actinoplanes sp. NPDC089786

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: University of Chicago


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_submitter: DS-I Africa


ncbi_organism_name: Candidatus Alistipes merdavium


ncbi_isolation_source: ascitis fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Turkey

ncbi_isolation_source: Raw milk


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Saprospirales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;x__environmental samples;s__uncultured Saprospirales bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: EMG


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Klebsiella variicola


ncbi_assembly_name: Lagierella massiliensis

ncbi_organism_name: Lagierella massiliensis

ncbi_submitter: URMITE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T54283

ncbi_submitter: Broad Institute


ncbi_isolation_source: Screen swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 52


ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_country: Belgium

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: LHUB-ULB


ncbi_country: Brazil: Bahia

ncbi_isolation_source: cocoa fermentation

ncbi_organism_name: Acetobacter senegalensis

ncbi_submitter: Faculdade de Ciencias Farmaceuticas de Ribeirao Preto


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Antarctica:Skarvsnes; Naga-Ike lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Legionella antarctica

ncbi_submitter: Toho University


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Clostridium baratii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Nocardia sp. NPDC003254

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Edaphocola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Italy

ncbi_isolation_source: minced meat bovine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Streptomyces sp. NPDC053560


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Erwinia rhapontici

ncbi_submitter: Graduate School of Engineering, Department of Material and Environmental Chemistry, Utsunomiya University


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Haifa


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- KT_bin-0736

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. ZT3R18

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Dx&Vx


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Ares Genetics


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: aquatic

ncbi_organism_name: Clostridiales bacterium UBA8153

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;x__unclassified Clostridiales Family XVII.;s__Clostridiales bacterium UBA8153


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Harvard University


ncbi_isolate: metabat2_pooled_metaflye.171 MAG

ncbi_organism_name: Thermophilibacter mediterraneus

ncbi_strain_identifiers: metabat2_pooled_metaflye.171 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_organism_name: Escherichia coli O125ac:K+:H10

ncbi_submitter: Roskilde University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7222


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: France

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ausgem


ncbi_country: China: Shandong

ncbi_submitter: China agricultural university


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: University of Colorado at Boulder


ncbi_country: Norway

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Israel

ncbi_isolation_source: soft tissue

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Florida; Florida Keys

ncbi_organism_name: Streptomyces sp. WMMB303

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Bangladesh: Kuakata

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_submitter: Centers for Disease Control & Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley;x__Salmonella enterica subsp. enterica serovar Stanley str. 06-0538


ncbi_organism_name: Aminobacter aminovorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0263

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Ruminococcaceae bacterium UBA1438

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang

ncbi_isolation_source: patient with gastroenterits

ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Hospital


ncbi_country: USA: NE

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aegiribacteria sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__FCB group incertae sedis;g__Candidatus Aegiribacteria;x__unclassified Candidatus Aegiribacteria;s__Candidatus Aegiribacteria sp.


ncbi_country: United Kingdom:Scotland

ncbi_submitter: SC


ncbi_organism_name: Desulfatiglans sp.

ncbi_submitter: Pau University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis TX0411

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_submitter: WRAIR-Africa


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education & Research, Chandigarh


ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Streptomyces sp. 900116325

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP7_E1_surf _bin _16

ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_strain_identifiers: AOP7_E1_surf _bin _16

ncbi_submitter: Genoscope


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: Togo: Lome

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universite de Lome


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Mesorhizobium sp. M1396

ncbi_submitter: Washington State University


ncbi_organism_name: Streptococcus agalactiae BSU442

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: University of Lausanne


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: bglFP 6813

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Mycoplasma sp. 4079

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Segatella copri


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Caulobacterales bacterium


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: OPTIMISTICC


ncbi_organism_name: Serratia sp. CY29653

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY29653


ncbi_organism_name: uncultured Brevifollis sp.


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_organism_name: Alistipes putredinis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: South Korea: Uijeongbu

ncbi_isolation_source: soil

ncbi_organism_name: Pontibacter humidus

ncbi_submitter: Seoul Women's University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: South Korea: Gangwon-Do

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: National Academy of Agricultural Science, Rural Development Adminstration


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0012

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 103

ncbi_submitter: SC


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: saliva

ncbi_organism_name: Treponema pectinovorum

ncbi_submitter: URMITE


ncbi_isolation_source: Vaginal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Xanthomonas sp. WHRI 8393

ncbi_strain_identifiers: WHRI 8393

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia

ncbi_isolation_source: mixed salad containing green lettuce; red lettuce; spinach; rocket

ncbi_organism_name: Weissella cibaria

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0055

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Iamia sp.


ncbi_country: USA: Virginia

ncbi_isolation_source: JAMMSM wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: Northeastern University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan

ncbi_isolation_source: patient with duodenal ulcer

ncbi_organism_name: Helicobacter pylori CPY1662

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: India

ncbi_isolation_source: avian heart (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: bronchial secretions

ncbi_organism_name: Staphylococcus aureus M1121

ncbi_submitter: Broad Institute


ncbi_country: Singapore

ncbi_isolation_source: Soil at pumping station near rising main Rangoon Road

ncbi_organism_name: Desulfosporosinus orientis DSM 765

ncbi_strain_identifiers: DSM 765

ncbi_submitter: JGI


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: marine

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Photobacterium rosenbergii

ncbi_submitter: Universiti Malaysia Terengganu


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteriovoracaceae bacterium UBA845


ncbi_organism_name: Methylobacterium brachythecii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: UNIVERSITY OF MELBOURNE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Kebrit brine-seawater interface

ncbi_organism_name: Thiomicrospira sp. XS5

ncbi_submitter: Red Sea Research Center, Saudi Arabia


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: TIGR/JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar;x__Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066


ncbi_country: Spain: Costa Brava

ncbi_isolation_source: seawater

ncbi_organism_name: Botrimarina mediterranea

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Canoga Park; CA

ncbi_isolation_source: Base of eucalyptus tree; near Vanowen St.; Shadow Ranch Park

ncbi_organism_name: Sporosarcina sp. P2

ncbi_submitter: University of Arizona


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Calgary


ncbi_country: Denmark: Odense

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Region Zealand


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: RIMG, Kochi University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Rietvlei

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0034

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Micrococcus sp. XM4230B

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: freshwater MAG --- MJ-2014-D7_bin-198

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: St. Louis

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: USA: VA

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Antarctica: Lake Vanda; McMurdo Dry Valleys

ncbi_isolation_source: Oligotrophic lake microbial mat

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia:Great Barrier Reef Lagoon

ncbi_isolation_source: non-axenic enrichment culture inoculated with Trichodesmium trichomes collected from seawater; maintained in YBC-II_artificial_seawater; biomass sampled from culture in 2019-05 for DNA extraction

ncbi_organism_name: Trichodesmium erythraeum GBRTRLIN201

ncbi_submitter: University of Southern California


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Jiangxi

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Houston

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Afipia felis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Marimicrobium sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: uncultured Marinilabiliaceae bacterium


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pectobacterium sp. CHL-2024

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Flavobacteriales bacterium UBA5933

ncbi_submitter: University of Queensland